mRNA_Ecto-sp13_S_contig6189.16895.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6189.16895.1
Unique NamemRNA_Ecto-sp13_S_contig6189.16895.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6189.16895.1 vs. uniprot
Match: D7FNP7_ECTSI (Caffeate O-Methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNP7_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 3.710e-25
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:  151 MSRKHQILELCDKVHRDLKLAGLPTDGCATDGTEHSSIAAMWSSELGFGPM 303
            MSRK Q+LELCDKVHRDLKLAGLPTDGCATDGTEHSSIAAMWSSELGFGPM
Sbjct:    1 MSRKQQVLELCDKVHRDLKLAGLPTDGCATDGTEHSSIAAMWSSELGFGPM 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6189.16895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNP7_ECTSI3.710e-2596.08Caffeate O-Methyltransferase n=2 Tax=Ectocarpus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6189contigEcto-sp13_S_contig6189:7517..7987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score106.7
Seed ortholog evalue3.7e-21
Seed eggNOG ortholog2880.D7FNP7
Preferred nameNTMT1
Model size471
KEGG koko:K14317,ko:K16219,ko:K19579
KEGG TC1.I.1
KEGG Pathwayko03013,ko05169,map03013,map05169
KEGG ModuleM00427
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0002181,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006325,GO:0006412,GO:0006464,GO:0006479,GO:0006480,GO:0006518,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0008757,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018011,GO:0018012,GO:0018013,GO:0018016,GO:0018193,GO:0018194,GO:0018201,GO:0018208,GO:0018209,GO:0019538,GO:0022402,GO:0031365,GO:0031974,GO:0031981,GO:0032259,GO:0034641,GO:0034645,GO:0035568,GO:0035570,GO:0035572,GO:0035573,GO:0036211,GO:0042054,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:0071885,GO:0071891,GO:0140096,GO:1901564,GO:1901566,GO:1901576
Exons1
EggNOG free text desc.O-methyltransferase activity
EggNOG OGsKOG3178@1,KOG3178@2759
EC2.1.1.244,2.1.1.299
Cds size174
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463861.8427439-UTR-Ecto-sp13_S_contig6189:7516..76661681463861.8427439-UTR-Ecto-sp13_S_contig6189:7516..7666Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6189 7517..7666 +
1681463861.8663962-UTR-Ecto-sp13_S_contig6189:7840..79871681463861.8663962-UTR-Ecto-sp13_S_contig6189:7840..7987Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6189 7841..7987 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463861.8561354-CDS-Ecto-sp13_S_contig6189:7666..78401681463861.8561354-CDS-Ecto-sp13_S_contig6189:7666..7840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6189 7667..7840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6189.16895.1prot_Ecto-sp13_S_contig6189.16895.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6189 7667..7840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6189.16895.1

>prot_Ecto-sp13_S_contig6189.16895.1 ID=prot_Ecto-sp13_S_contig6189.16895.1|Name=mRNA_Ecto-sp13_S_contig6189.16895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
MSRKHQILELCDKVHRDLKLAGLPTDGCATDGTEHSSIAAMWSSELGFGP
MASGYLS*
back to top

mRNA from alignment at Ecto-sp13_S_contig6189:7517..7987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6189.16895.1 ID=mRNA_Ecto-sp13_S_contig6189.16895.1|Name=mRNA_Ecto-sp13_S_contig6189.16895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6189:7517..7987+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCTCTCATTCGTGGCGGGGGGGGTATTGAAGCGTGTGCCCCTCCCTG
AGAAAATGCCTCCCAAACCTCTTCGCCGCTCGATCTCTGCTCTGGGCGCT
GAATTGCTTCACCTCCTCCCTGCTCTGCTGTTGGATACAACAAGAAGAAG
ATGAGTCGCAAGCACCAGATTCTTGAGCTTTGCGACAAAGTCCACAGGGA
TCTCAAGCTCGCCGGCCTTCCAACGGACGGGTGCGCTACTGACGGCACGG
AGCACTCAAGCATTGCGGCGATGTGGTCTTCGGAGCTTGGTTTTGGACCC
ATGGCAAGTGGCTACCTGTCCTAGATCGACGTCCCAGTTGATATAGTTCG
AGGCTTTCAGCGACGGCTGCTTTGGTCTCTCACGAAGCGCACACCATCTT
CCCCCCCCTGCGACGCCGTTTCATGAACGGTGACCTGCCTTGTTCAATGT
GCATGATATCGTTGCCTTGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6189:7517..7987+

>mRNA_Ecto-sp13_S_contig6189.16895.1 ID=mRNA_Ecto-sp13_S_contig6189.16895.1|Name=mRNA_Ecto-sp13_S_contig6189.16895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6189:7517..7987+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTCGCAAGCACCAGATTCTTGAGCTTTGCGACAAAGTCCACAGGGA
TCTCAAGCTCGCCGGCCTTCCAACGGACGGGTGCGCTACTGACGGCACGG
AGCACTCAAGCATTGCGGCGATGTGGTCTTCGGAGCTTGGTTTTGGACCC
ATGGCAAGTGGCTACCTGTCCTAG
back to top