mRNA_Ecto-sp13_S_contig61881.16892.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61881.16892.1
Unique NamemRNA_Ecto-sp13_S_contig61881.16892.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61881.16892.1 vs. uniprot
Match: D8LRG7_ECTSI (Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG7_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 5.460e-15
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 PSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQ 111
            PSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQ
Sbjct:  373 PSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQ 409
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BLAST of mRNA_Ecto-sp13_S_contig61881.16892.1 vs. uniprot
Match: A0A0M0JRH7_9EUKA (Flagellar basal body protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JRH7_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 3.720e-9
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 PSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINN 105
            PS+LP+NPD  VDI  LTW+D+ERVLRLLFAKINN
Sbjct:  373 PSNLPSNPDEHVDIRELTWDDRERVLRLLFAKINN 407
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BLAST of mRNA_Ecto-sp13_S_contig61881.16892.1 vs. uniprot
Match: A0A7S3ES86_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ES86_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.250e-8
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 PSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINN 105
            PS+LPT+ D  VDI  LTW+D+ERVLRLLFAKINN
Sbjct:   57 PSNLPTSADEHVDIRDLTWDDRERVLRLLFAKINN 91
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BLAST of mRNA_Ecto-sp13_S_contig61881.16892.1 vs. uniprot
Match: A0A7S4IE21_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IE21_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 3.330e-8
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 PSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINN 105
            PS+LPT+ D  +DI  LTWED+ERVLRLLFAKINN
Sbjct:  384 PSNLPTSADEHIDIRDLTWEDRERVLRLLFAKINN 418
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BLAST of mRNA_Ecto-sp13_S_contig61881.16892.1 vs. uniprot
Match: A0A7S2WKV3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKV3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.220e-8
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    4 SSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQVCPRSL 129
            S LP +P TKV +S LTW D+E+VLRLLFAKIN VQ   R++
Sbjct:   49 SQLPVSPSTKVQLSDLTWMDREKVLRLLFAKINAVQRTVRNM 90
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BLAST of mRNA_Ecto-sp13_S_contig61881.16892.1 vs. uniprot
Match: A0A7S2UZS8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZS8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.230e-8
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 PSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQ 111
            PS LP +P  KVD+  LT ED+ERVLRLLFAKINNVQ
Sbjct:  432 PSKLPPDPSAKVDLKDLTLEDRERVLRLLFAKINNVQ 468
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BLAST of mRNA_Ecto-sp13_S_contig61881.16892.1 vs. uniprot
Match: A0A7S4FCI4_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FCI4_CHRCT)

HSP 1 Score: 54.7 bits (130), Expect = 2.180e-7
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 PSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINN 105
            PS+LP + + +VDI  LTWED+ERVLRLLFAKINN
Sbjct:  375 PSNLPQSAEERVDIRDLTWEDRERVLRLLFAKINN 409
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BLAST of mRNA_Ecto-sp13_S_contig61881.16892.1 vs. uniprot
Match: A0A836CKC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.180e-7
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    4 SSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQ 111
            S+LP +PD  +++  L WED+ERVLRLLFAKINNVQ
Sbjct:  433 SALPLDPDAHIELQELGWEDRERVLRLLFAKINNVQ 468
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BLAST of mRNA_Ecto-sp13_S_contig61881.16892.1 vs. uniprot
Match: UPI0007780C44 (basal body-orientation factor 1 isoform X1 n=4 Tax=Coturnix japonica TaxID=93934 RepID=UPI0007780C44)

HSP 1 Score: 51.6 bits (122), Expect = 2.670e-6
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   31 KVDISSLTWEDKERVLRLLFAKINNVQVCPRSLGVKTS 144
            KVDIS LTWE KERVLRLLFAK+NN  +   S  + TS
Sbjct:  406 KVDISELTWEQKERVLRLLFAKMNNTNLWKHSRDLTTS 443
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BLAST of mRNA_Ecto-sp13_S_contig61881.16892.1 vs. uniprot
Match: A0A024TTX4_9STRA (DUF4515 domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TTX4_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.990e-6
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   13 PTNPDTKVDISSLTWEDKERVLRLLFAKINNVQ 111
            P  P  KVD+ +LTWE++ERVLRLLFAKIN++Q
Sbjct:  411 PLGPRDKVDLRALTWEERERVLRLLFAKINSIQ 443
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61881.16892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRG7_ECTSI5.460e-15100.00Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A0M0JRH7_9EUKA3.720e-977.14Flagellar basal body protein n=1 Tax=Chrysochromul... [more]
A0A7S3ES86_9EUKA1.250e-874.29Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4IE21_9EUKA3.330e-874.29Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2WKV3_9STRA4.220e-861.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2UZS8_9STRA6.230e-872.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4FCI4_CHRCT2.180e-771.43Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A836CKC3_9STRA2.180e-766.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI0007780C442.670e-665.79basal body-orientation factor 1 isoform X1 n=4 Tax... [more]
A0A024TTX4_9STRA4.990e-666.67DUF4515 domain-containing protein n=3 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61881contigEcto-sp13_S_contig61881:524..667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score77.4
Seed ortholog evalue2e-12
Seed eggNOG ortholog2880.D8LRG7
Preferred nameCCDC176
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0036064,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
EggNOG free text desc.motile cilium assembly
EggNOG OGs28J0W@1,2QRCW@2759
Cds size144
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463861.6443446-CDS-Ecto-sp13_S_contig61881:523..6671681463861.6443446-CDS-Ecto-sp13_S_contig61881:523..667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61881 524..667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61881.16892.1prot_Ecto-sp13_S_contig61881.16892.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61881 524..667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61881.16892.1

>prot_Ecto-sp13_S_contig61881.16892.1 ID=prot_Ecto-sp13_S_contig61881.16892.1|Name=mRNA_Ecto-sp13_S_contig61881.16892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
PSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQVCPRSLGVKTS
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mRNA from alignment at Ecto-sp13_S_contig61881:524..667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61881.16892.1 ID=mRNA_Ecto-sp13_S_contig61881.16892.1|Name=mRNA_Ecto-sp13_S_contig61881.16892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61881:524..667+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCATCTTCTCTCCCGACAAACCCAGACACGAAGGTGGACATCTCCAGTCT
GACCTGGGAAGACAAAGAGAGGGTGCTTCGTCTTCTGTTTGCCAAAATCA
ACAACGTGCAGGTATGTCCTCGAAGTTTAGGTGTGAAGACATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61881:524..667+

>mRNA_Ecto-sp13_S_contig61881.16892.1 ID=mRNA_Ecto-sp13_S_contig61881.16892.1|Name=mRNA_Ecto-sp13_S_contig61881.16892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61881:524..667+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCATCTTCTCTCCCGACAAACCCAGACACGAAGGTGGACATCTCCAGTCT
GACCTGGGAAGACAAAGAGAGGGTGCTTCGTCTTCTGTTTGCCAAAATCA
ACAACGTGCAGGTATGTCCTCGAAGTTTAGGTGTGAAGACATCG
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