mRNA_Ecto-sp13_S_contig61869.16890.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61869.16890.1
Unique NamemRNA_Ecto-sp13_S_contig61869.16890.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61869.16890.1 vs. uniprot
Match: D7G6R3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R3_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.480e-20
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 VVDTSANYMGGNSELLVGEGVDRWLASGEGKDTSMTVVSKFGYAA 135
            VVDTSANYMGGNSELLVGEGVDRWLASGEGKDTS+TVVSKFGYAA
Sbjct:   34 VVDTSANYMGGNSELLVGEGVDRWLASGEGKDTSITVVSKFGYAA 78
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BLAST of mRNA_Ecto-sp13_S_contig61869.16890.1 vs. uniprot
Match: A0A6H5JTW4_9PHAE (Aldo_ket_red domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW4_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.700e-19
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 VVDTSANYMGGNSELLVGEGVDRWLASGEGKDTSMTVVSKFGYAA 135
            VVDTSANYMGGNSELLVGEGVDRWLASGEGKD S+TVVSKFGYAA
Sbjct:   34 VVDTSANYMGGNSELLVGEGVDRWLASGEGKDKSLTVVSKFGYAA 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61869.16890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6R3_ECTSI4.480e-2097.78EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JTW4_9PHAE1.700e-1995.56Aldo_ket_red domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61869contigEcto-sp13_S_contig61869:424..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score74.3
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog2880.D7G6R3
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2E5ZQ@1,2SCRD@2759
Cds size129
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463861.5261295-UTR-Ecto-sp13_S_contig61869:423..4471681463861.5261295-UTR-Ecto-sp13_S_contig61869:423..447Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig61869 424..447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463861.5374234-CDS-Ecto-sp13_S_contig61869:447..5761681463861.5374234-CDS-Ecto-sp13_S_contig61869:447..576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61869 448..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61869.16890.1prot_Ecto-sp13_S_contig61869.16890.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61869 448..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61869.16890.1

>prot_Ecto-sp13_S_contig61869.16890.1 ID=prot_Ecto-sp13_S_contig61869.16890.1|Name=mRNA_Ecto-sp13_S_contig61869.16890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
MGGNSELLVGEGVDRWLASGEGKDTSMTVVSKFGYAAVSLGG*
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mRNA from alignment at Ecto-sp13_S_contig61869:424..576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61869.16890.1 ID=mRNA_Ecto-sp13_S_contig61869.16890.1|Name=mRNA_Ecto-sp13_S_contig61869.16890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61869:424..576+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGTCGACACCAGTGCGAATTACATGGGCGGAAACAGCGAGCTCTTGGT
GGGTGAGGGGGTCGACCGGTGGCTAGCCTCTGGCGAAGGCAAAGACACGA
GCATGACGGTGGTGTCCAAGTTCGGCTACGCCGCGGTAAGCTTGGGAGGT
TAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61869:424..576+

>mRNA_Ecto-sp13_S_contig61869.16890.1 ID=mRNA_Ecto-sp13_S_contig61869.16890.1|Name=mRNA_Ecto-sp13_S_contig61869.16890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61869:424..576+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGGAAACAGCGAGCTCTTGGTGGGTGAGGGGGTCGACCGGTGGCT
AGCCTCTGGCGAAGGCAAAGACACGAGCATGACGGTGGTGTCCAAGTTCG
GCTACGCCGCGGTAAGCTTGGGAGGTTAA
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