mRNA_Ecto-sp13_S_contig6185.16887.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig6185.16887.1
Unique Name	mRNA_Ecto-sp13_S_contig6185.16887.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot
Match: A0A6H5K022_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K022_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.640e-61
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1

Query:    1 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCQPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAVSEGCYVYNER 276
            HCNS IGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRC+PVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIA SEGCYVYNER
Sbjct:   65 HCNSLIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAASEGCYVYNER 156

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BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot
Match: A0A6H5JR36_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR36_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 6.030e-61
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 1

Query:    1 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCQPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAVSEGCYVYNER 276
            HCNSSIGWTTYQTALAVAAGAGEHTC  TDVCHPGQRC+PVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIA SEGCYVYNER
Sbjct:   51 HCNSSIGWTTYQTALAVAAGAGEHTCAGTDVCHPGQRCKPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAASEGCYVYNER 142

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BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot
Match: A0A6H5JI12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI12_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 2.320e-60
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1

Query:    1 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCQPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAVSEGCYVYNER 276
            HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRC+PVESGG+SLAERANS GIRHETF DARRRMHNTNHDIAPKIA SEGCYVYNER
Sbjct:   82 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVESGGMSLAERANSFGIRHETFRDARRRMHNTNHDIAPKIAASEGCYVYNER 173

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BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot
Match: A0A6H5KA34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA34_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.860e-58
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 1

Query:    1 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCQPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAVSEGCYVYNER 276
            HCNSSIGWTTYQTALAVA GAGEHTCTDTDVCHPGQRC+PVESGGVSLAERANSLGIRHETFSDARRRMHN NHDIAPKIAVSEGCYVYN+R
Sbjct:  142 HCNSSIGWTTYQTALAVAPGAGEHTCTDTDVCHPGQRCKPVESGGVSLAERANSLGIRHETFSDARRRMHNMNHDIAPKIAVSEGCYVYNDR 233

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BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot
Match: A0A6H5JUE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE5_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 7.890e-58
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 1

Query:    1 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCQPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAVSEGCYVYNER 276
            HCNSSIGWTTYQTALAVAAGAGEHTCT TDVCHPGQRC+PVE GGV+LAERANSLGI HETFSDARRRMHNTNHDIAPKIA SEGCYV+NER
Sbjct:   67 HCNSSIGWTTYQTALAVAAGAGEHTCTYTDVCHPGQRCKPVEFGGVNLAERANSLGIWHETFSDARRRMHNTNHDIAPKIAASEGCYVFNER 158

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BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 4.290e-57
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1

Query:    1 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCQPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAVSEGCYVYNER 276
            HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRC+PVESGGVSLAERANSLGIRHETFSDAR RMHNTNHDIAPKIA SEGCYVYNER
Sbjct:  187 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKPVESGGVSLAERANSLGIRHETFSDARWRMHNTNHDIAPKIAASEGCYVYNER 278

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BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot
Match: A0A6H5K188_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K188_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 6.160e-57
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 1

Query:    1 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCQPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAVSEGCYVYNER 276
            HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRC+ VESGGVSLAERAN+LGIRHE FS+ARRRMHNTNHDIAPKIA SEGCYVYNER
Sbjct:   63 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCKSVESGGVSLAERANTLGIRHEAFSNARRRMHNTNHDIAPKIAASEGCYVYNER 154

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BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot
Match: A0A6H5L5A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A0_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.040e-56
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1

Query:    1 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCQPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAVSEGCYVYNER 276
            HCNSSIGWTTYQTALAVAAGAG HTCTDTDVCH  +RC+PVESGGVS+AERA SLGIRHETFSDARRRMHNT+HDIAPKIA SEGCYVYNER
Sbjct:   77 HCNSSIGWTTYQTALAVAAGAGAHTCTDTDVCHSAERCKPVESGGVSIAERAYSLGIRHETFSDARRRMHNTSHDIAPKIAASEGCYVYNER 168

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BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot
Match: A0A6H5JLI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI3_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.850e-56
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 1

Query:    1 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCQPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAVSEGCYVYNER 276
            H NSSI WTTYQTALAVAAGAGEH CTDTDVCH GQRC+PVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIA SEGCYV+NER
Sbjct:   51 HRNSSIWWTTYQTALAVAAGAGEHMCTDTDVCHLGQRCKPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAASEGCYVFNER 142

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BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot
Match: A0A6H5L711_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L711_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.720e-56
Identity = 85/92 (92.39%), Postives = 86/92 (93.48%), Query Frame = 1

Query:    1 HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCQPVESGGVSLAERANSLGIRHETFSDARRRMHNTNHDIAPKIAVSEGCYVYNER 276
            HCNSSIGWTTY TALAVAA AGEHTCTDTDVCHPGQRC+PVESGGVSLAER NSLGIRHET SDARRRMHNTNHDIA KIA SEGCYVYNER
Sbjct:  119 HCNSSIGWTTYYTALAVAARAGEHTCTDTDVCHPGQRCKPVESGGVSLAERTNSLGIRHETSSDARRRMHNTNHDIAHKIAASEGCYVYNER 210

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6185.16887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K022_9PHAE	1.640e-61	96.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JR36_9PHAE	6.030e-61	95.65	Uncharacterized protein (Fragment) n=2 Tax=Ectocar...	[more]
A0A6H5JI12_9PHAE	2.320e-60	94.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KA34_9PHAE	1.860e-58	95.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUE5_9PHAE	7.890e-58	92.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JF90_9PHAE	4.290e-57	96.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K188_9PHAE	6.160e-57	93.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L5A0_9PHAE	1.040e-56	90.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLI3_9PHAE	1.850e-56	92.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L711_9PHAE	2.720e-56	92.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6185	contig	Ecto-sp13_S_contig6185:34..309 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	277
Hectar predicted targeting category	other localisation
Exons	1
Cds size	276

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463861.450346-CDS-Ecto-sp13_S_contig6185:33..309	1681463861.450346-CDS-Ecto-sp13_S_contig6185:33..309	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig6185 34..309 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6185.16887.1	prot_Ecto-sp13_S_contig6185.16887.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig6185 34..309 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig6185:34..309+
coding sequence from alignment at Ecto-sp13_S_contig6185:34..309+

protein sequence of mRNA_Ecto-sp13_S_contig6185.16887.1

>prot_Ecto-sp13_S_contig6185.16887.1 ID=prot_Ecto-sp13_S_contig6185.16887.1|Name=mRNA_Ecto-sp13_S_contig6185.16887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
HCNSSIGWTTYQTALAVAAGAGEHTCTDTDVCHPGQRCQPVESGGVSLAE
RANSLGIRHETFSDARRRMHNTNHDIAPKIAVSEGCYVYNER

mRNA from alignment at Ecto-sp13_S_contig6185:34..309+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig6185.16887.1 ID=mRNA_Ecto-sp13_S_contig6185.16887.1|Name=mRNA_Ecto-sp13_S_contig6185.16887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6185:34..309+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACTGCAACAGCTCGATAGGGTGGACCACTTACCAGACAGCGCTCGCTGT
AGCAGCCGGAGCGGGAGAGCACACCTGTACTGACACGGACGTTTGCCACC
CCGGCCAGCGGTGCCAGCCCGTTGAGTCTGGCGGAGTGAGCCTTGCCGAG
CGAGCCAACAGTCTCGGCATTCGGCACGAGACTTTCAGCGACGCACGGCG
GCGGATGCACAACACGAACCACGACATCGCCCCTAAGATCGCTGTGAGTG
AGGGATGCTACGTGTACAACGAGCGC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6185:34..309+

>mRNA_Ecto-sp13_S_contig6185.16887.1 ID=mRNA_Ecto-sp13_S_contig6185.16887.1|Name=mRNA_Ecto-sp13_S_contig6185.16887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6185:34..309+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACTGCAACAGCTCGATAGGGTGGACCACTTACCAGACAGCGCTCGCTGT
AGCAGCCGGAGCGGGAGAGCACACCTGTACTGACACGGACGTTTGCCACC
CCGGCCAGCGGTGCCAGCCCGTTGAGTCTGGCGGAGTGAGCCTTGCCGAG
CGAGCCAACAGTCTCGGCATTCGGCACGAGACTTTCAGCGACGCACGGCG
GCGGATGCACAACACGAACCACGACATCGCCCCTAAGATCGCTGTGAGTG
AGGGATGCTACGTGTACAACGAGCGC