mRNA_Ecto-sp13_S_contig61823.16884.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61823.16884.1
Unique NamemRNA_Ecto-sp13_S_contig61823.16884.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61823.16884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61823contigEcto-sp13_S_contig61823:285..806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size522
Hectar predicted targeting categoryother localisation
Exons1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463861.0556846-CDS-Ecto-sp13_S_contig61823:284..8061681463861.0556846-CDS-Ecto-sp13_S_contig61823:284..806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61823 285..806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61823.16884.1prot_Ecto-sp13_S_contig61823.16884.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61823 285..806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61823.16884.1

>prot_Ecto-sp13_S_contig61823.16884.1 ID=prot_Ecto-sp13_S_contig61823.16884.1|Name=mRNA_Ecto-sp13_S_contig61823.16884.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
KDVEDCFARERRGRTLTFEDDKDVLAERDSRLGSATGMSTKPKIQKSSSS
GKGKARRRGSTLRRRRGHNDGSGGAQDHSEGRSRVESTATENSEEVATNG
SKITRPRKNVSVSEPSPNQHRKLRPRAMDQQDNLPKIEVAAASKSGSGGS
APLTAIPSLPHQRMPSRVLKTFW*
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mRNA from alignment at Ecto-sp13_S_contig61823:285..806-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61823.16884.1 ID=mRNA_Ecto-sp13_S_contig61823.16884.1|Name=mRNA_Ecto-sp13_S_contig61823.16884.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61823:285..806- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGACGTCGAAGACTGCTTCGCACGAGAGCGTCGAGGGAGAACCTTAAC
TTTCGAGGATGACAAAGACGTGTTGGCGGAACGAGATTCAAGACTCGGCT
CGGCAACAGGGATGTCCACCAAACCAAAAATTCAGAAGTCCAGTTCGAGC
GGGAAGGGCAAGGCTCGAAGGCGCGGTAGCACGCTTCGTCGCCGAAGAGG
TCACAACGATGGTTCGGGCGGTGCACAAGACCACTCGGAAGGACGATCCA
GGGTCGAATCGACAGCAACAGAAAATTCGGAGGAGGTCGCTACCAACGGT
TCGAAAATCACCAGGCCACGAAAGAACGTCTCCGTCTCTGAGCCATCTCC
GAACCAACATCGCAAGTTAAGACCTCGAGCGATGGACCAACAAGACAACT
TGCCAAAGATAGAAGTGGCGGCAGCTTCAAAATCGGGCAGTGGAGGGTCC
GCTCCTTTGACCGCGATCCCATCACTGCCACATCAGAGGATGCCGAGCAG
GGTATTGAAGACGTTTTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61823:285..806-

>mRNA_Ecto-sp13_S_contig61823.16884.1 ID=mRNA_Ecto-sp13_S_contig61823.16884.1|Name=mRNA_Ecto-sp13_S_contig61823.16884.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61823:285..806- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGACGTCGAAGACTGCTTCGCACGAGAGCGTCGAGGGAGAACCTTAAC
TTTCGAGGATGACAAAGACGTGTTGGCGGAACGAGATTCAAGACTCGGCT
CGGCAACAGGGATGTCCACCAAACCAAAAATTCAGAAGTCCAGTTCGAGC
GGGAAGGGCAAGGCTCGAAGGCGCGGTAGCACGCTTCGTCGCCGAAGAGG
TCACAACGATGGTTCGGGCGGTGCACAAGACCACTCGGAAGGACGATCCA
GGGTCGAATCGACAGCAACAGAAAATTCGGAGGAGGTCGCTACCAACGGT
TCGAAAATCACCAGGCCACGAAAGAACGTCTCCGTCTCTGAGCCATCTCC
GAACCAACATCGCAAGTTAAGACCTCGAGCGATGGACCAACAAGACAACT
TGCCAAAGATAGAAGTGGCGGCAGCTTCAAAATCGGGCAGTGGAGGGTCC
GCTCCTTTGACCGCGATCCCATCACTGCCACATCAGAGGATGCCGAGCAG
GGTATTGAAGACGTTTTGGTGA
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