prot_Ecto-sp13_S_contig6177.16877.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig6177.16877.1
Unique Name	prot_Ecto-sp13_S_contig6177.16877.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	534

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A6H5L308_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L308_9PHAE)

HSP 1 Score: 892 bits (2305), Expect = 0.000e+0
Identity = 448/494 (90.69%), Postives = 454/494 (91.90%), Query Frame = 0

Query:    2 RTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHVDAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVK 495
            RTYTGDQTSSIA+AMAKCDPLGPLM+NVVKLYSTPDGEAFTALGRVYSG VRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDIN+AKAGNWVLLEGVDA+IHKTATICEAEEGGLGGGEEAAIFRPLSFKTT                                       AVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACR+SIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHVDAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMV+
Sbjct:  477 RTYTGDQTSSIAVAMAKCDPLGPLMVNVVKLYSTPDGEAFTALGRVYSGTVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINMAKAGNWVLLEGVDATIHKTATICEAEEGGLGGGEEAAIFRPLSFKTT---------------------------------------AVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRDSIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHVDAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 931

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A7S2CQL7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQL7_9STRA)

HSP 1 Score: 805 bits (2080), Expect = 6.730e-290
Identity = 396/526 (75.29%), Postives = 443/526 (84.22%), Query Frame = 0

Query:    4 YTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAEM 527
            YTG + SS    M  CDP G LMINVVKLYS PDG  F A GR+YSG ++ G  VKVLGEAYS  DEEDMAV EVT ISI +GR  +D+  A AGNWV+++GVDA I+KTATI         G ++A IFRPLSF TT+V+KLAVEPLNP++LPK+VEGLR+ISKSYP   TK     VEESGEHV+ GTGEL +DC+MHDLR MY+D EVK ADP TAFCETVVETS+LKCF+ETPNKRNKLTMIAEPLE GLA DIE GEVSI+WDRK LGEFFQSKYDWDLLAARS+WAFGP+ DGPNILVDDTLPSEVDK  L   +ES+VQGFQWGCREGPLCDEPIRN KFKILDA IA EPIHRGGGQ+IPTARRVAYSAFLMATPRLMEP+  +++QAPADVVS+I+P L +RRGHV  D PKPGAPFYT+KA++P+IDSFGFETDLRA+TQGQA C Q FDHWSIVPGDPLDR+I+LHPLEPSPP  LAR+FMVKTRRRKGLSEDVSI KFFDDPMLMELA+Q AEM
Sbjct:   36 YTGLRDSSCMADMTACDPSGALMINVVKLYSAPDGVTFHAFGRIYSGTLKVGDSVKVLGEAYSLDDEEDMAVCEVTGISIGEGRYRLDVERAGAGNWVMIQGVDAPINKTATITSVR-----GNDDATIFRPLSFNTTAVMKLAVEPLNPAELPKMVEGLRRISKSYPATATK-----VEESGEHVIFGTGELSLDCIMHDLRRMYSDIEVKTADPVTAFCETVVETSALKCFAETPNKRNKLTMIAEPLEEGLAEDIERGEVSIDWDRKQLGEFFQSKYDWDLLAARSVWAFGPDIDGPNILVDDTLPSEVDKKLLKQVQESVVQGFQWGCREGPLCDEPIRNTKFKILDATIAPEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPVMELQIQAPADVVSSIFPVLARRRGHVVQDTPKPGAPFYTIKAYLPAIDSFGFETDLRAFTQGQAMCFQTFDHWSIVPGDPLDRSIVLHPLEPSPPPQLARDFMVKTRRRKGLSEDVSIQKFFDDPMLMELAKQDAEM 551

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A835Z8L8_9STRA (GTPase of the U5 snRNP particle n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L8_9STRA)

HSP 1 Score: 807 bits (2084), Expect = 3.920e-284
Identity = 393/531 (74.01%), Postives = 459/531 (86.44%), Query Frame = 0

Query:    2 RTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELAR-QQAEMGA 529
            R YTG   SS   AMA+CD LGPLMINVVKLYS PDG++F A GR+YSG VRTGQKV+VLGE YS  D+ED AV+EVTA+S+  GR  +D+ +AKAGNWVLLEGVDA+I +TATI +AE     G ++ AIFRPL     SV+KLAVEPL P++LPK+VEGLR++SK+YP+A TK     VEESGEHV+ GTGEL ++C MHDLR MYA+ EVKVADPS  F ETVV+TSSLKCFSETPNK+NKLTMIAEPL+ GLA DIE G VSI+WDRKTLG+FFQSKY+WDLLA+RS+WAFGP+  GPN+LVDDTLPSEVD+  L + + S++QGFQWGCREGPLCDEP+RN KFKILDAV+A+E IHRGGGQ+IPT+RRVAYSAFL+A+PRLMEP++ VE+QAPADVV A+YP LQ+RRGHV  D+PKPGAPFYTV+A+IP IDSFGFETDLR+YTQGQAFCTQVFDHWSIVPGDPLDRNI+LHPLEPSPPQHLAR+FMVKTRRRKGLSEDVSINKFFDDPML+E+A  Q+AE+ A
Sbjct:  451 RIYTGAPDSSEFQAMARCDALGPLMINVVKLYSMPDGQSFVAWGRIYSGTVRTGQKVRVLGETYSLEDDEDSAVREVTAVSVPGGRHRLDVTLAKAGNWVLLEGVDANITRTATITDAE-----GADDVAIFRPLLVGNVSVMKLAVEPLRPAELPKMVEGLRRVSKTYPMAATK-----VEESGEHVIYGTGELMLECAMHDLREMYAEIEVKVADPSCTFRETVVDTSSLKCFSETPNKKNKLTMIAEPLDEGLAQDIEIGAVSIDWDRKTLGDFFQSKYNWDLLASRSVWAFGPDAMGPNVLVDDTLPSEVDRASLASIKSSVIQGFQWGCREGPLCDEPLRNTKFKILDAVVASEAIHRGGGQIIPTSRRVAYSAFLLASPRLMEPVYAVEIQAPADVVGALYPVLQRRRGHVVQDSPKPGAPFYTVRAYIPVIDSFGFETDLRSYTQGQAFCTQVFDHWSIVPGDPLDRNIVLHPLEPSPPQHLARDFMVKTRRRKGLSEDVSINKFFDDPMLLEIAAAQEAELRA 971

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A812LP25_SYMMI (116 kDa U5 small nuclear ribonucleoprotein component n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812LP25_SYMMI)

HSP 1 Score: 800 bits (2066), Expect = 2.450e-281
Identity = 384/529 (72.59%), Postives = 453/529 (85.63%), Query Frame = 0

Query:    3 TYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAEMGA 529
            +YTG  +S  A+ M KCDP GPL+INVVKL++TPDG  F +LGR+YSG +R GQ+VKVLGEAY+  DEEDMA+ EV A+ +  GR  ++IN AKAGNWVL+EG+DA I KTAT+ +A        E+ AIFRPL F + SV+KLAVEPL P++LPK+VEGLR+I+KSYP   TK     VEESGEHV+ G+GEL MDCVMHDLR +Y+D EVKVADP  AFCETVVETSS+KCFSETPNKRNK+TM+AEPLE GLA DIE+G V I+W++K++GEFFQSKY+WDLL+ARSIWAFGP++ GPNIL+DDTLPSEVDK  + + RES+VQGF+WGCREGPLCDEP+RNAKFKILDAVIA EPIHRGGGQ+IPTARR AYSAFLMATPRLMEP++ VE+QAPAD V A+YP L +RRGHV  DAPKPGAPFYTVKAFIP +DSFGFETDLR+YTQGQAFC Q+FDHW++V GDPLDRN+ILHPLEPSPP  LAR+FMVKTRRRKGLSEDVSINK+FDDPML+ELA+Q+A MG+
Sbjct:  460 SYTGYNSSEAAVGMRKCDPNGPLVINVVKLFNTPDGSKFLSLGRIYSGTIRAGQQVKVLGEAYTQEDEEDMAIVEVGALYVGAGRFSIEINSAKAGNWVLIEGIDAPIKKTATVTDAHT------EDIAIFRPLKFDSASVMKLAVEPLKPAELPKMVEGLRRINKSYPSVTTK-----VEESGEHVIFGSGELCMDCVMHDLRHLYSDIEVKVADPVAAFCETVVETSSIKCFSETPNKRNKITMLAEPLEEGLAADIEAGNVCIDWNKKSIGEFFQSKYNWDLLSARSIWAFGPDDCGPNILIDDTLPSEVDKTAMASIRESVVQGFKWGCREGPLCDEPVRNAKFKILDAVIAGEPIHRGGGQIIPTARRAAYSAFLMATPRLMEPVYLVEIQAPADCVQAVYPVLARRRGHVVQDAPKPGAPFYTVKAFIPVMDSFGFETDLRSYTQGQAFCQQIFDHWAVVTGDPLDRNVILHPLEPSPPGALARDFMVKTRRRKGLSEDVSINKYFDDPMLLELAKQEAAMGS 977

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A7S2WSH7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSH7_9STRA)

HSP 1 Score: 788 bits (2036), Expect = 3.750e-277
Identity = 388/530 (73.21%), Postives = 448/530 (84.53%), Query Frame = 0

Query:    2 RTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAEMGA 529
            + Y+G  +SS A AM  CDP GPLM+NVVKLYSTP+G +F ALGRVYSG +R G +VKVLGEAYS  DEEDMAV +VT +S+++GR  + ++ A+AGNWVL+ GVD  I KTATI  A      G  +  IF+PL F T  V+KLAVEPLNP++LPK+VEGLR+ISKSYPLA TK     VEESGEHVVL TGEL +DC+MHDLR MY+D EVK ADP TAFCETVVETS+LKCF+ETPNKRNKLTMIAEPLE+GLA DIE GEV + WDRK LGEFFQ+KYDWDLLAARSIWAFGP+  GPNILVDDTLPSEV+K  L   R+S+VQGFQWGCREGPLCDEPIRN KFKIL+A IA EPIHRGGGQ+IPTARRVAYSAFLMATPRLMEP+F +++QAPADVVS+I+P L +RRGHV  D PKPGAPFYT+KAF+P+IDSFGFETDLRA+TQGQA C Q FDHWSIV GDPLDR+I+LHPLEP+ PQ LAR+FM+KTRRRKGLSEDVSI+KFFDDPML+ELA+Q A++ A
Sbjct:  433 QVYSGSMSSSCATAMKACDPAGPLMVNVVKLYSTPEGTSFHALGRVYSGTLRAGDQVKVLGEAYSLDDEEDMAVCQVTELSLAEGRYRIAVSEARAGNWVLIAGVDGPISKTATITGAR-----GPADVEIFKPLPFNTVPVLKLAVEPLNPAELPKMVEGLRRISKSYPLAGTK-----VEESGEHVVLATGELALDCIMHDLRRMYSDIEVKTADPVTAFCETVVETSALKCFAETPNKRNKLTMIAEPLEDGLAEDIERGEVDMGWDRKQLGEFFQTKYDWDLLAARSIWAFGPDTRGPNILVDDTLPSEVNKKLLAQVRDSVVQGFQWGCREGPLCDEPIRNTKFKILEATIAQEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPVFELQIQAPADVVSSIFPVLARRRGHVVQDTPKPGAPFYTMKAFLPAIDSFGFETDLRAFTQGQAMCFQSFDHWSIVDGDPLDRSIVLHPLEPALPQQLARDFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQDADLQA 952

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: W1PLG4_AMBTC (Tr-type G domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PLG4_AMBTC)

HSP 1 Score: 756 bits (1952), Expect = 5.630e-264
Identity = 371/526 (70.53%), Postives = 428/526 (81.37%), Query Frame = 0

Query:    4 YTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAEM 527
            YTG Q S +  AM  CDP GPLM+NV KL+   D   F A GRVYSG ++TGQ V+VLGE YS  DEEDM VKEVT + + Q R  + I+ A AG+WVL+EGVDASI KTAT+C          E+  IFRPL F T  V+K A EPLNPS+LPK+VEGLRKISKSYPLA TK     VEESGEH +LGTGELY+D +M DLR +Y++ EVKVADP  +FCETVVE+SS+KCF+ETPNK+NK+TM+AEPLE GLA DIE+G VSI+W RK LG+FFQSKYDWDLLAARSIWAFGP+  GPNIL+DDTLPSEVDKN LNA ++SIVQGFQWG REGPLCDEPIRN KFKILDA IA EP+HRGGGQ+IP ARRVAYSAFLMATPRLMEP++ VE+Q P D VSAIY  L +RRGHV  D PKPG P Y VKAF+P I+SFGFETDLR +TQGQAFC  VFDHW+IVPGDPLD++++L PLEP+P QHLAREFMVKTRRRKG+SEDVSI+KFFDDPML+ELARQ A++
Sbjct:  468 YTGPQDSLVVEAMKDCDPSGPLMVNVTKLFPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSPEDEEDMTVKEVTKLWVYQARYRLPISKAPAGSWVLIEGVDASIMKTATLCPEYM-----DEDIYIFRPLRFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITK-----VEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSIKCFAETPNKKNKITMLAEPLEKGLAEDIENGVVSIDWPRKKLGDFFQSKYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKNMLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILDATIAPEPLHRGGGQIIPAARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPSYIVKAFLPVIESFGFETDLRYHTQGQAFCVSVFDHWAIVPGDPLDKSVVLRPLEPAPVQHLAREFMVKTRRRKGMSEDVSISKFFDDPMLLELARQDADL 983

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A812E5D0_SEPPH (EFTUD2 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812E5D0_SEPPH)

HSP 1 Score: 739 bits (1909), Expect = 3.020e-263
Identity = 361/522 (69.16%), Postives = 424/522 (81.23%), Query Frame = 0

Query:    4 YTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQ 523
            YTG   + +A AM +CD  GPLMI+  KLY TPD  +F  LGR+ SG +   Q+V++LGE YS  DEED     V  + I++ R  +++N   AGNW+L+EG+D SI KT+TI E     + G EE  IFRP+ F T+SVIK+AVEP+NPS+LPK+++GLRK++KSYPL +TK     VEESGEH++LGTGELY+DCVMHDLR MY++ ++KVADP  +FCETVVETSSLKCF+ETPNK+NK+TMIAEPLE GLA DIE+  V I W RK LGEFFQ+KYDWDLLAARSIWAFGP+  GPNILVDDTLPSEVDKN L A ++SIVQGFQW  REGPLCDEPIRN KFKILDAVIA EPIHRGGGQ+IPTARRVAYSAFLMATPR+MEP + VEV APAD VSA+Y  L +RRGHV  DAP PG+P YT+KAFIP+IDSFGFETDLR +TQGQAFC  VF HW IVPGDPLD++II+ PLEP P  HLAREFM+KTRRRKGLSEDVSINKFFDDPML+ELA+Q
Sbjct:   77 YTGSMETELAEAMVQCDADGPLMIHTTKLYPTPDATSFHVLGRIMSGTLHANQEVRILGENYSLQDEEDSRFGMVGRLWIAEARYKIEVNRVPAGNWILIEGIDQSIVKTSTITE-----VSGPEEIYIFRPIKFNTSSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLNTK-----VEESGEHIILGTGELYLDCVMHDLRKMYSEIDIKVADPVVSFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWPRKRLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKNLLIAVKDSIVQGFQWATREGPLCDEPIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRMMEPYYFVEVMAPADCVSAVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIIIRPLEPQPATHLAREFMIKTRRRKGLSEDVSINKFFDDPMLLELAKQ 588

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A843W9U2_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843W9U2_COLES)

HSP 1 Score: 744 bits (1921), Expect = 7.100e-263
Identity = 365/526 (69.39%), Postives = 428/526 (81.37%), Query Frame = 0

Query:    4 YTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAEM 527
            YTG Q S +   M  CDP GPLM+NVVKLY   D   F A GRVYSG ++TGQ ++VLGE YS  DEEDM VKEVT + + Q R  + I+ A AG+WVL+EGVDASI KTAT+C      L   E+  IFRPL F T SV+K A EPLNPS+LPK+VEGLRKISKSYPLA TK     VEESGEH +LGTGE+Y+D +M DLR +Y++ EVKVADP   FCETV ++SSLKCF+ETPNK+NK+TM+AEPLE GLA DIE+G VSI+W ++ LG+FFQ+KYDWDLLAARSIWAFGP+  GPNIL+DDTLP+EVDKN LNA ++SIVQGFQWG REGPLCDEPIRN KFKILDA IAAEP+HRGGGQ+IPTARRVAYSAFLMATPRLMEP++ VEV  PAD +SAIY  + +RRGHV  D PKPG P Y VKAF+P I+SFGFETDLR +TQGQAFC  VFDHW+IVPGDPLD++I+L PLEP+P QHLAREFMVKTRRRKG+S+DVS NKFFD+ M++ELA+Q AE+
Sbjct:  220 YTGPQDSLVVETMKDCDPSGPLMVNVVKLYPKSDCSVFDAFGRVYSGTIQTGQTLRVLGEGYSPDDEEDMTVKEVTKLWVYQARYRIPISKAPAGSWVLIEGVDASIMKTATLCP-----LHMDEDVYIFRPLHFNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAITK-----VEESGEHTILGTGEMYLDSIMKDLRELYSEVEVKVADPVVTFCETVQDSSSLKCFAETPNKKNKITMLAEPLEKGLAEDIENGVVSIDWPKRKLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILDATIAAEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYYVEVLTPADCLSAIYTVISRRRGHVTADIPKPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWNIVPGDPLDKSIVLRPLEPAPVQHLAREFMVKTRRRKGMSDDVSANKFFDEAMMVELAQQAAEL 735

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A0C9S3M2_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_14987_3423 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9S3M2_9SPER)

HSP 1 Score: 753 bits (1945), Expect = 7.570e-263
Identity = 369/525 (70.29%), Postives = 429/525 (81.71%), Query Frame = 0

Query:    4 YTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAE 526
            YTG Q + IA AM  CDP GPLM+NV KLY   D   F + GRVYSG ++TGQ V+VLGE YS  DEEDMA+KEVT + + Q R  + I+ A AG+WVL+EGVDASI KTAT+C          E+  IFRPL F T SV+K A EPLNPS+LPK+VEGLRKISKSYPLA TK     VEESGEH +LGTGE+Y+D +M DLR +Y++ EVKVADP  +FCETVVE+SS+KCF+ETPNK+NK+TM+AEPLE GLA DIE+G VSI+W RK LG+FFQ+KYDWDLLAARSIWAFGP+  GPNIL+DDTLPSEVDK  LN+ ++SIVQGFQWG REGPLCDEPIRN KFKILDA IA EP+HRGGGQ+IPTARRVAYSAFLMA PRLMEP++ VE+Q PAD +SAIY  L +RRGHV  D  KPG P Y VKAF+P I+SFGFETDLR +TQGQAFC  VFDHWSIVPGDPLD++++L PLEP+P QHLAREFMVKTRRRKG+SEDVSINKFFDDPML+E+ARQ A+
Sbjct:  473 YTGPQDTLIANAMKNCDPRGPLMVNVTKLYPKADCSVFDSFGRVYSGTIQTGQTVRVLGEGYSPDDEEDMAIKEVTKLWVYQARYRIPISKAPAGSWVLIEGVDASIMKTATLCPEYL-----DEDVFIFRPLRFNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAITK-----VEESGEHTILGTGEIYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMLAEPLEKGLAEDIENGVVSIDWPRKKLGDFFQNKYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKTLLNSVKDSIVQGFQWGAREGPLCDEPIRNVKFKILDATIAPEPLHRGGGQIIPTARRVAYSAFLMANPRLMEPVYYVEIQTPADCISAIYTVLSRRRGHVTADIAKPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWSIVPGDPLDKSVVLRPLEPAPVQHLAREFMVKTRRRKGMSEDVSINKFFDDPMLLEMARQDAD 987

[Close]

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: W7TM02_9STRA (116 kDa U5 small nuclear ribonucleoprotein component n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM02_9STRA)

HSP 1 Score: 753 bits (1945), Expect = 9.770e-263
Identity = 365/528 (69.13%), Postives = 434/528 (82.20%), Query Frame = 0

Query:    4 YTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAEMGA 529
            YTG Q S  A+AM +CDP GPLM++VVKLYS PDGE+F + GRVYSG +  GQ+V+VLGEAY+  DEEDMAV+EV ++SI QGR  ++++ A+ GNWVLLEGVD  I KTAT+ EA+     G +EAAIF+PL F    V+KLAVEPLNP++LPK+VE LRKI KSYP A TK     VEESGEHV+LGTGELY+DC+MHDLR ++A  EVKVADP  +FCETV ETSSL+CF+ETPNK+N+L MIAEPLE G+A DIE G VS +WDR+ +G+FF +KY WDLL AR+IWAFGP+  G N+L++DT+PSEVD+  L+  ++SIVQGFQWGCREGPLCDEPIRN KFKILDA IA EP+HRGGGQVIPTARRVAYSAFL+ATP+LMEP F+VEVQ PAD V AI+  LQ+RRGHV  D PKPG PFYTV+AF+P+IDSFGFETDLRAYTQGQAFC+QVFDHW  VPGDPLDR ++LHPLEP+P   LAR+FMVKTRRRKGLSEDV I+K+FD  +L  LA QQAE  A
Sbjct:  471 YTGAQDSEAALAMKRCDPRGPLMLHVVKLYSAPDGESFQSFGRVYSGTITAGQQVRVLGEAYTLEDEEDMAVREVKSLSIGQGRYRLEVSTARPGNWVLLEGVDGPISKTATLIEAK-----GNDEAAIFKPLKFDVAPVLKLAVEPLNPAELPKMVEALRKIRKSYPAAQTK-----VEESGEHVILGTGELYLDCIMHDLRHLHASLEVKVADPVVSFCETVRETSSLRCFAETPNKQNQLHMIAEPLEAGIARDIEEGAVSTDWDRRAVGDFFHAKYGWDLLTARNIWAFGPDAQGANVLINDTMPSEVDQRLLDNVKDSIVQGFQWGCREGPLCDEPIRNVKFKILDATIAPEPVHRGGGQVIPTARRVAYSAFLLATPQLMEPYFKVEVQCPADCVDAIHLVLQRRRGHVKEDRPKPGTPFYTVEAFLPAIDSFGFETDLRAYTQGQAFCSQVFDHWKEVPGDPLDREVVLHPLEPAPINSLARDFMVKTRRRKGLSEDVMISKYFDAELLQSLANQQAEAAA 988

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L308_9PHAE	0.000e+0	90.69	Tr-type G domain-containing protein n=2 Tax=Ectoca...	[more]
A0A7S2CQL7_9STRA	6.730e-290	75.29	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A835Z8L8_9STRA	3.920e-284	74.01	GTPase of the U5 snRNP particle n=1 Tax=Tribonema ...	[more]
A0A812LP25_SYMMI	2.450e-281	72.59	116 kDa U5 small nuclear ribonucleoprotein compone...	[more]
A0A7S2WSH7_9STRA	3.750e-277	73.21	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
W1PLG4_AMBTC	5.630e-264	70.53	Tr-type G domain-containing protein n=1 Tax=Ambore...	[more]
A0A812E5D0_SEPPH	3.020e-263	69.16	EFTUD2 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=...	[more]
A0A843W9U2_COLES	7.100e-263	69.39	Uncharacterized protein n=1 Tax=Colocasia esculent...	[more]
A0A0C9S3M2_9SPER	7.570e-263	70.29	TSA: Wollemia nobilis Ref_Wollemi_Transcript_14987...	[more]
W7TM02_9STRA	9.770e-263	69.13	116 kDa U5 small nuclear ribonucleoprotein compone...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000640	Elongation factor EFG, domain V-like	SMART	SM00838	EFG_C_a	coord: 387..474 e-value: 6.6E-17 score: 72.2
IPR000640	Elongation factor EFG, domain V-like	PFAM	PF00679	EFG_C	coord: 387..473 e-value: 3.6E-22 score: 78.2
IPR005517	Translation elongation factor EFG/EF2, domain IV	SMART	SM00889	EFG_IV_2	coord: 264..385 e-value: 1.3E-19 score: 81.2
IPR005517	Translation elongation factor EFG/EF2, domain IV	PFAM	PF03764	EFG_IV	coord: 268..384 e-value: 6.0E-24 score: 84.1
None	No IPR available	GENE3D	3.30.70.240		coord: 225..502 e-value: 1.9E-114 score: 383.2
None	No IPR available	GENE3D	3.30.70.870		coord: 141..221 e-value: 4.1E-23 score: 83.2
None	No IPR available	GENE3D	2.40.30.10		coord: 1..122 e-value: 1.6E-34 score: 120.5
None	No IPR available	PANTHER	PTHR42908:SF6	116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT	coord: 2..523
None	No IPR available	PANTHER	PTHR42908	FAMILY NOT NAMED	coord: 2..523
IPR004161	Translation elongation factor EFTu-like, domain 2	PFAM	PF03144	GTP_EFTU_D2	coord: 41..117 e-value: 9.4E-11 score: 42.0
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 230..505 e-value: 1.9E-114 score: 383.2
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 222..389
IPR035647	EF-G domain III/V-like	SUPERFAMILY	54980	EF-G C-terminal domain-like	coord: 141..219
IPR035647	EF-G domain III/V-like	SUPERFAMILY	54980	EF-G C-terminal domain-like	coord: 390..475
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 4..120

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6177	contig	Ecto-sp13_S_contig6177:716..8303 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6177.16877.1	mRNA_Ecto-sp13_S_contig6177.16877.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig6177 716..8309 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig6177.16877.1 ID=prot_Ecto-sp13_S_contig6177.16877.1|Name=mRNA_Ecto-sp13_S_contig6177.16877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=534bp
MRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSG
AVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNW
VLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEP
LNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDC
VMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIA
EPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPEN
DGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKF
KILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAP
ADVVSAIYPALQKRRGHVDAPKPGAPFYTVKAFIPSIDSFGFETDLRAYT
QGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRK
GLSEDVSINKFFDDPMLMELARQQAEMGAGGMM*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000640	EFG_V-like
IPR005517	Transl_elong_EFG/EF2_IV
IPR004161	EFTu-like_2
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR020568	Ribosomal_S5_D2-typ_fold
IPR035647	EFG_III/V
IPR009000	Transl_B-barrel_sf