mRNA_Ecto-sp13_S_contig6177.16877.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6177.16877.1
Unique NamemRNA_Ecto-sp13_S_contig6177.16877.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A6H5L308_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L308_9PHAE)

HSP 1 Score: 895 bits (2313), Expect = 0.000e+0
Identity = 450/497 (90.54%), Postives = 456/497 (91.75%), Query Frame = 1 
Query:    1 KIMRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHVDAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVK 1491
            KI RTYTGDQTSSIA+AMAKCDPLGPLM+NVVKLYSTPDGEAFTALGRVYSG VRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDIN+AKAGNWVLLEGVDA+IHKTATICEAEEGGLGGGEEAAIFRPLSFKTT                                       AVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACR+SIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHVDAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMV+
Sbjct:  474 KITRTYTGDQTSSIAVAMAKCDPLGPLMVNVVKLYSTPDGEAFTALGRVYSGTVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINMAKAGNWVLLEGVDATIHKTATICEAEEGGLGGGEEAAIFRPLSFKTT---------------------------------------AVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRDSIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHVDAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVR 931
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BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A7S2CQL7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQL7_9STRA)

HSP 1 Score: 807 bits (2085), Expect = 1.260e-290
Identity = 397/531 (74.76%), Postives = 445/531 (83.80%), Query Frame = 1 
Query:    1 KIMRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAEM 1587
            K+   YTG + SS    M  CDP G LMINVVKLYS PDG  F A GR+YSG ++ G  VKVLGEAYS  DEEDMAV EVT ISI +GR  +D+  A AGNWV+++GVDA I+KTATI         G ++A IFRPLSF TT+V+KLAVEPLNP++LPK+VEGLR+ISKSYP   TK     VEESGEHV+ GTGEL +DC+MHDLR MY+D EVK ADP TAFCETVVETS+LKCF+ETPNKRNKLTMIAEPLE GLA DIE GEVSI+WDRK LGEFFQSKYDWDLLAARS+WAFGP+ DGPNILVDDTLPSEVDK  L   +ES+VQGFQWGCREGPLCDEPIRN KFKILDA IA EPIHRGGGQ+IPTARRVAYSAFLMATPRLMEP+  +++QAPADVVS+I+P L +RRGHV  D PKPGAPFYT+KA++P+IDSFGFETDLRA+TQGQA C Q FDHWSIVPGDPLDR+I+LHPLEPSPP  LAR+FMVKTRRRKGLSEDVSI KFFDDPMLMELA+Q AEM
Sbjct:   31 KVENIYTGLRDSSCMADMTACDPSGALMINVVKLYSAPDGVTFHAFGRIYSGTLKVGDSVKVLGEAYSLDDEEDMAVCEVTGISIGEGRYRLDVERAGAGNWVMIQGVDAPINKTATITSVR-----GNDDATIFRPLSFNTTAVMKLAVEPLNPAELPKMVEGLRRISKSYPATATK-----VEESGEHVIFGTGELSLDCIMHDLRRMYSDIEVKTADPVTAFCETVVETSALKCFAETPNKRNKLTMIAEPLEEGLAEDIERGEVSIDWDRKQLGEFFQSKYDWDLLAARSVWAFGPDIDGPNILVDDTLPSEVDKKLLKQVQESVVQGFQWGCREGPLCDEPIRNTKFKILDATIAPEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPVMELQIQAPADVVSSIFPVLARRRGHVVQDTPKPGAPFYTIKAYLPAIDSFGFETDLRAFTQGQAMCFQTFDHWSIVPGDPLDRSIVLHPLEPSPPPQLARDFMVKTRRRKGLSEDVSIQKFFDDPMLMELAKQDAEM 551
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BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A835Z8L8_9STRA (GTPase of the U5 snRNP particle n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L8_9STRA)

HSP 1 Score: 810 bits (2091), Expect = 3.690e-285
Identity = 394/534 (73.78%), Postives = 461/534 (86.33%), Query Frame = 1 
Query:    1 KIMRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELAR-QQAEMGA 1593
            K+ R YTG   SS   AMA+CD LGPLMINVVKLYS PDG++F A GR+YSG VRTGQKV+VLGE YS  D+ED AV+EVTA+S+  GR  +D+ +AKAGNWVLLEGVDA+I +TATI +AE     G ++ AIFRPL     SV+KLAVEPL P++LPK+VEGLR++SK+YP+A TK     VEESGEHV+ GTGEL ++C MHDLR MYA+ EVKVADPS  F ETVV+TSSLKCFSETPNK+NKLTMIAEPL+ GLA DIE G VSI+WDRKTLG+FFQSKY+WDLLA+RS+WAFGP+  GPN+LVDDTLPSEVD+  L + + S++QGFQWGCREGPLCDEP+RN KFKILDAV+A+E IHRGGGQ+IPT+RRVAYSAFL+A+PRLMEP++ VE+QAPADVV A+YP LQ+RRGHV  D+PKPGAPFYTV+A+IP IDSFGFETDLR+YTQGQAFCTQVFDHWSIVPGDPLDRNI+LHPLEPSPPQHLAR+FMVKTRRRKGLSEDVSINKFFDDPML+E+A  Q+AE+ A
Sbjct:  448 KVARIYTGAPDSSEFQAMARCDALGPLMINVVKLYSMPDGQSFVAWGRIYSGTVRTGQKVRVLGETYSLEDDEDSAVREVTAVSVPGGRHRLDVTLAKAGNWVLLEGVDANITRTATITDAE-----GADDVAIFRPLLVGNVSVMKLAVEPLRPAELPKMVEGLRRVSKTYPMAATK-----VEESGEHVIYGTGELMLECAMHDLREMYAEIEVKVADPSCTFRETVVDTSSLKCFSETPNKKNKLTMIAEPLDEGLAQDIEIGAVSIDWDRKTLGDFFQSKYNWDLLASRSVWAFGPDAMGPNVLVDDTLPSEVDRASLASIKSSVIQGFQWGCREGPLCDEPLRNTKFKILDAVVASEAIHRGGGQIIPTSRRVAYSAFLLASPRLMEPVYAVEIQAPADVVGALYPVLQRRRGHVVQDSPKPGAPFYTVRAYIPVIDSFGFETDLRSYTQGQAFCTQVFDHWSIVPGDPLDRNIVLHPLEPSPPQHLARDFMVKTRRRKGLSEDVSINKFFDDPMLLEIAAAQEAELRA 971
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BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A812LP25_SYMMI (116 kDa U5 small nuclear ribonucleoprotein component n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812LP25_SYMMI)

HSP 1 Score: 802 bits (2072), Expect = 3.270e-282
Identity = 386/533 (72.42%), Postives = 455/533 (85.37%), Query Frame = 1 
Query:    1 KIMRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAEMGA 1593
            KI  +YTG  +S  A+ M KCDP GPL+INVVKL++TPDG  F +LGR+YSG +R GQ+VKVLGEAY+  DEEDMA+ EV A+ +  GR  ++IN AKAGNWVL+EG+DA I KTAT+ +A        E+ AIFRPL F + SV+KLAVEPL P++LPK+VEGLR+I+KSYP   TK     VEESGEHV+ G+GEL MDCVMHDLR +Y+D EVKVADP  AFCETVVETSS+KCFSETPNKRNK+TM+AEPLE GLA DIE+G V I+W++K++GEFFQSKY+WDLL+ARSIWAFGP++ GPNIL+DDTLPSEVDK  + + RES+VQGF+WGCREGPLCDEP+RNAKFKILDAVIA EPIHRGGGQ+IPTARR AYSAFLMATPRLMEP++ VE+QAPAD V A+YP L +RRGHV  DAPKPGAPFYTVKAFIP +DSFGFETDLR+YTQGQAFC Q+FDHW++V GDPLDRN+ILHPLEPSPP  LAR+FMVKTRRRKGLSEDVSINK+FDDPML+ELA+Q+A MG+
Sbjct:  456 KIALSYTGYNSSEAAVGMRKCDPNGPLVINVVKLFNTPDGSKFLSLGRIYSGTIRAGQQVKVLGEAYTQEDEEDMAIVEVGALYVGAGRFSIEINSAKAGNWVLIEGIDAPIKKTATVTDAHT------EDIAIFRPLKFDSASVMKLAVEPLKPAELPKMVEGLRRINKSYPSVTTK-----VEESGEHVIFGSGELCMDCVMHDLRHLYSDIEVKVADPVAAFCETVVETSSIKCFSETPNKRNKITMLAEPLEEGLAADIEAGNVCIDWNKKSIGEFFQSKYNWDLLSARSIWAFGPDDCGPNILIDDTLPSEVDKTAMASIRESVVQGFKWGCREGPLCDEPVRNAKFKILDAVIAGEPIHRGGGQIIPTARRAAYSAFLMATPRLMEPVYLVEIQAPADCVQAVYPVLARRRGHVVQDAPKPGAPFYTVKAFIPVMDSFGFETDLRSYTQGQAFCQQIFDHWAVVTGDPLDRNVILHPLEPSPPGALARDFMVKTRRRKGLSEDVSINKYFDDPMLLELAKQEAAMGS 977
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BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A7S2WSH7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSH7_9STRA)

HSP 1 Score: 790 bits (2041), Expect = 7.100e-278
Identity = 389/533 (72.98%), Postives = 450/533 (84.43%), Query Frame = 1 
Query:    1 KIMRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAEMGA 1593
            K+ + Y+G  +SS A AM  CDP GPLM+NVVKLYSTP+G +F ALGRVYSG +R G +VKVLGEAYS  DEEDMAV +VT +S+++GR  + ++ A+AGNWVL+ GVD  I KTATI  A      G  +  IF+PL F T  V+KLAVEPLNP++LPK+VEGLR+ISKSYPLA TK     VEESGEHVVL TGEL +DC+MHDLR MY+D EVK ADP TAFCETVVETS+LKCF+ETPNKRNKLTMIAEPLE+GLA DIE GEV + WDRK LGEFFQ+KYDWDLLAARSIWAFGP+  GPNILVDDTLPSEV+K  L   R+S+VQGFQWGCREGPLCDEPIRN KFKIL+A IA EPIHRGGGQ+IPTARRVAYSAFLMATPRLMEP+F +++QAPADVVS+I+P L +RRGHV  D PKPGAPFYT+KAF+P+IDSFGFETDLRA+TQGQA C Q FDHWSIV GDPLDR+I+LHPLEP+ PQ LAR+FM+KTRRRKGLSEDVSI+KFFDDPML+ELA+Q A++ A
Sbjct:  430 KVDQVYSGSMSSSCATAMKACDPAGPLMVNVVKLYSTPEGTSFHALGRVYSGTLRAGDQVKVLGEAYSLDDEEDMAVCQVTELSLAEGRYRIAVSEARAGNWVLIAGVDGPISKTATITGAR-----GPADVEIFKPLPFNTVPVLKLAVEPLNPAELPKMVEGLRRISKSYPLAGTK-----VEESGEHVVLATGELALDCIMHDLRRMYSDIEVKTADPVTAFCETVVETSALKCFAETPNKRNKLTMIAEPLEDGLAEDIERGEVDMGWDRKQLGEFFQTKYDWDLLAARSIWAFGPDTRGPNILVDDTLPSEVNKKLLAQVRDSVVQGFQWGCREGPLCDEPIRNTKFKILEATIAQEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPVFELQIQAPADVVSSIFPVLARRRGHVVQDTPKPGAPFYTMKAFLPAIDSFGFETDLRAFTQGQAMCFQSFDHWSIVDGDPLDRSIVLHPLEPALPQQLARDFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQDADLQA 952
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BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: W1PLG4_AMBTC (Tr-type G domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PLG4_AMBTC)

HSP 1 Score: 758 bits (1957), Expect = 1.070e-264
Identity = 372/531 (70.06%), Postives = 430/531 (80.98%), Query Frame = 1 
Query:    1 KIMRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAEM 1587
            K+   YTG Q S +  AM  CDP GPLM+NV KL+   D   F A GRVYSG ++TGQ V+VLGE YS  DEEDM VKEVT + + Q R  + I+ A AG+WVL+EGVDASI KTAT+C          E+  IFRPL F T  V+K A EPLNPS+LPK+VEGLRKISKSYPLA TK     VEESGEH +LGTGELY+D +M DLR +Y++ EVKVADP  +FCETVVE+SS+KCF+ETPNK+NK+TM+AEPLE GLA DIE+G VSI+W RK LG+FFQSKYDWDLLAARSIWAFGP+  GPNIL+DDTLPSEVDKN LNA ++SIVQGFQWG REGPLCDEPIRN KFKILDA IA EP+HRGGGQ+IP ARRVAYSAFLMATPRLMEP++ VE+Q P D VSAIY  L +RRGHV  D PKPG P Y VKAF+P I+SFGFETDLR +TQGQAFC  VFDHW+IVPGDPLD++++L PLEP+P QHLAREFMVKTRRRKG+SEDVSI+KFFDDPML+ELARQ A++
Sbjct:  463 KVEHIYTGPQDSLVVEAMKDCDPSGPLMVNVTKLFPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSPEDEEDMTVKEVTKLWVYQARYRLPISKAPAGSWVLIEGVDASIMKTATLCPEYM-----DEDIYIFRPLRFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITK-----VEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSIKCFAETPNKKNKITMLAEPLEKGLAEDIENGVVSIDWPRKKLGDFFQSKYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKNMLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILDATIAPEPLHRGGGQIIPAARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPSYIVKAFLPVIESFGFETDLRYHTQGQAFCVSVFDHWAIVPGDPLDKSVVLRPLEPAPVQHLAREFMVKTRRRKGMSEDVSISKFFDDPMLLELARQDADL 983
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BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A812E5D0_SEPPH (EFTUD2 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812E5D0_SEPPH)

HSP 1 Score: 742 bits (1915), Expect = 3.990e-264
Identity = 362/527 (68.69%), Postives = 426/527 (80.83%), Query Frame = 1 
Query:    1 KIMRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQ 1575
            K+   YTG   + +A AM +CD  GPLMI+  KLY TPD  +F  LGR+ SG +   Q+V++LGE YS  DEED     V  + I++ R  +++N   AGNW+L+EG+D SI KT+TI E     + G EE  IFRP+ F T+SVIK+AVEP+NPS+LPK+++GLRK++KSYPL +TK     VEESGEH++LGTGELY+DCVMHDLR MY++ ++KVADP  +FCETVVETSSLKCF+ETPNK+NK+TMIAEPLE GLA DIE+  V I W RK LGEFFQ+KYDWDLLAARSIWAFGP+  GPNILVDDTLPSEVDKN L A ++SIVQGFQW  REGPLCDEPIRN KFKILDAVIA EPIHRGGGQ+IPTARRVAYSAFLMATPR+MEP + VEV APAD VSA+Y  L +RRGHV  DAP PG+P YT+KAFIP+IDSFGFETDLR +TQGQAFC  VF HW IVPGDPLD++II+ PLEP P  HLAREFM+KTRRRKGLSEDVSINKFFDDPML+ELA+Q
Sbjct:   72 KVEHVYTGSMETELAEAMVQCDADGPLMIHTTKLYPTPDATSFHVLGRIMSGTLHANQEVRILGENYSLQDEEDSRFGMVGRLWIAEARYKIEVNRVPAGNWILIEGIDQSIVKTSTITE-----VSGPEEIYIFRPIKFNTSSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLNTK-----VEESGEHIILGTGELYLDCVMHDLRKMYSEIDIKVADPVVSFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWPRKRLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKNLLIAVKDSIVQGFQWATREGPLCDEPIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRMMEPYYFVEVMAPADCVSAVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIIIRPLEPQPATHLAREFMIKTRRRKGLSEDVSINKFFDDPMLLELAKQ 588
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BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A843W9U2_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843W9U2_COLES)

HSP 1 Score: 746 bits (1927), Expect = 9.430e-264
Identity = 367/531 (69.11%), Postives = 430/531 (80.98%), Query Frame = 1 
Query:    1 KIMRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAEM 1587
            KI   YTG Q S +   M  CDP GPLM+NVVKLY   D   F A GRVYSG ++TGQ ++VLGE YS  DEEDM VKEVT + + Q R  + I+ A AG+WVL+EGVDASI KTAT+C      L   E+  IFRPL F T SV+K A EPLNPS+LPK+VEGLRKISKSYPLA TK     VEESGEH +LGTGE+Y+D +M DLR +Y++ EVKVADP   FCETV ++SSLKCF+ETPNK+NK+TM+AEPLE GLA DIE+G VSI+W ++ LG+FFQ+KYDWDLLAARSIWAFGP+  GPNIL+DDTLP+EVDKN LNA ++SIVQGFQWG REGPLCDEPIRN KFKILDA IAAEP+HRGGGQ+IPTARRVAYSAFLMATPRLMEP++ VEV  PAD +SAIY  + +RRGHV  D PKPG P Y VKAF+P I+SFGFETDLR +TQGQAFC  VFDHW+IVPGDPLD++I+L PLEP+P QHLAREFMVKTRRRKG+S+DVS NKFFD+ M++ELA+Q AE+
Sbjct:  215 KIEHIYTGPQDSLVVETMKDCDPSGPLMVNVVKLYPKSDCSVFDAFGRVYSGTIQTGQTLRVLGEGYSPDDEEDMTVKEVTKLWVYQARYRIPISKAPAGSWVLIEGVDASIMKTATLCP-----LHMDEDVYIFRPLHFNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAITK-----VEESGEHTILGTGEMYLDSIMKDLRELYSEVEVKVADPVVTFCETVQDSSSLKCFAETPNKKNKITMLAEPLEKGLAEDIENGVVSIDWPKRKLGDFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLLNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILDATIAAEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYYVEVLTPADCLSAIYTVISRRRGHVTADIPKPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWNIVPGDPLDKSIVLRPLEPAPVQHLAREFMVKTRRRKGMSDDVSANKFFDEAMMVELAQQAAEL 735
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BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A0C9S3M2_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_14987_3423 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9S3M2_9SPER)

HSP 1 Score: 755 bits (1950), Expect = 1.430e-263
Identity = 370/530 (69.81%), Postives = 431/530 (81.32%), Query Frame = 1 
Query:    1 KIMRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQQAE 1584
            K+   YTG Q + IA AM  CDP GPLM+NV KLY   D   F + GRVYSG ++TGQ V+VLGE YS  DEEDMA+KEVT + + Q R  + I+ A AG+WVL+EGVDASI KTAT+C          E+  IFRPL F T SV+K A EPLNPS+LPK+VEGLRKISKSYPLA TK     VEESGEH +LGTGE+Y+D +M DLR +Y++ EVKVADP  +FCETVVE+SS+KCF+ETPNK+NK+TM+AEPLE GLA DIE+G VSI+W RK LG+FFQ+KYDWDLLAARSIWAFGP+  GPNIL+DDTLPSEVDK  LN+ ++SIVQGFQWG REGPLCDEPIRN KFKILDA IA EP+HRGGGQ+IPTARRVAYSAFLMA PRLMEP++ VE+Q PAD +SAIY  L +RRGHV  D  KPG P Y VKAF+P I+SFGFETDLR +TQGQAFC  VFDHWSIVPGDPLD++++L PLEP+P QHLAREFMVKTRRRKG+SEDVSINKFFDDPML+E+ARQ A+
Sbjct:  468 KVEHIYTGPQDTLIANAMKNCDPRGPLMVNVTKLYPKADCSVFDSFGRVYSGTIQTGQTVRVLGEGYSPDDEEDMAIKEVTKLWVYQARYRIPISKAPAGSWVLIEGVDASIMKTATLCPEYL-----DEDVFIFRPLRFNTLSVVKTATEPLNPSELPKMVEGLRKISKSYPLAITK-----VEESGEHTILGTGEIYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMLAEPLEKGLAEDIENGVVSIDWPRKKLGDFFQNKYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKTLLNSVKDSIVQGFQWGAREGPLCDEPIRNVKFKILDATIAPEPLHRGGGQIIPTARRVAYSAFLMANPRLMEPVYYVEIQTPADCISAIYTVLSRRRGHVTADIAKPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWSIVPGDPLDKSVVLRPLEPAPVQHLAREFMVKTRRRKGMSEDVSINKFFDDPMLLEMARQDAD 987
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BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Match: A0A8C6M9C1_NOTFU (Elongation factor Tu GTP binding domain containing 2 n=2 Tax=Euteleostomi TaxID=117571 RepID=A0A8C6M9C1_NOTFU)

HSP 1 Score: 741 bits (1914), Expect = 1.440e-263
Identity = 369/527 (70.02%), Postives = 422/527 (80.08%), Query Frame = 1 
Query:    1 KIMRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSGAVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNWVLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEPLNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDCVMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIAEPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAPADVVSAIYPALQKRRGHV--DAPKPGAPFYTVKAFIPSIDSFGFETDLRAYTQGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRKGLSEDVSINKFFDDPMLMELARQ 1575
            KI  TYTG   S +  AMA+CDP GPLM +  K+YST DG  F A GRV SG ++ GQ VKVLGE Y+  DEED  +  V  + IS  R  +++N   AGNWVL+EG D  I KTATI E       G EEA IFRPL F T SVIK+AVEP+NPS+LPK+++GLRK++KSYP   TK     VEESGEHV+LGTGELY+DCVMHDLR MY++ ++KVADP   FCETVVETSSLKCF+ETPNK+NK+TMIAEPLE GLA DIE+  V I W+RK LGEFFQ+KYDWDLLAARSIWAFGP+  GPNILVDDTLPSEVDK  L + ++SIVQGFQWG REGPLCDEPIRN KFKILDAVIA EP+HRGGGQVIPTARRV YSAFLMATPRLMEP + VEVQAPAD VSA+Y  L +RRGHV  DAP PG+P YT+KAFIP+IDSFGFETDLR +TQGQAF   VF HW IVPGDPLD++I++ PLEP P  HLAREFM+KTRRRKGLSEDVSI+KFFDDPML+ELA+Q
Sbjct:   98 KIEHTYTGGLDSDLGEAMAECDPDGPLMCHTTKMYSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYQIEVNRVPAGNWVLIEGCDQPIVKTATITEPR-----GNEEAQIFRPLKFNTASVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTK-----VEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQ 614
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6177.16877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L308_9PHAE0.000e+090.54Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2CQL7_9STRA1.260e-29074.76Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835Z8L8_9STRA3.690e-28573.78GTPase of the U5 snRNP particle n=1 Tax=Tribonema ... [more]
A0A812LP25_SYMMI3.270e-28272.42116 kDa U5 small nuclear ribonucleoprotein compone... [more]
A0A7S2WSH7_9STRA7.100e-27872.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W1PLG4_AMBTC1.070e-26470.06Tr-type G domain-containing protein n=1 Tax=Ambore... [more]
A0A812E5D0_SEPPH3.990e-26468.69EFTUD2 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=... [more]
A0A843W9U2_COLES9.430e-26469.11Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
A0A0C9S3M2_9SPER1.430e-26369.81TSA: Wollemia nobilis Ref_Wollemi_Transcript_14987... [more]
A0A8C6M9C1_NOTFU1.440e-26370.02Elongation factor Tu GTP binding domain containing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6177contigEcto-sp13_S_contig6177:716..8309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1050.0
Seed ortholog evalue3.6e-304
Seed eggNOG ortholog2880.D8LIZ9
Preferred nameEF-TU
Model size1608
KEGG koko:K12852
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000974,GO:0001672,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009506,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010154,GO:0010467,GO:0010847,GO:0015030,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030312,GO:0030532,GO:0031445,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033043,GO:0033044,GO:0034622,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045694,GO:0046483,GO:0046540,GO:0048316,GO:0048367,GO:0048437,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051239,GO:0055044,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0097525,GO:0097526,GO:0099402,GO:0120114,GO:1901265,GO:1901360,GO:1901363,GO:1902275,GO:1902494,GO:1902802,GO:1990904,GO:2000026,GO:2000241
Exons12
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0480@1,KOG0468@2759
Ec32 ortholog descriptionSnu114, GTPase of the U5 snRNP particle
Ec32 orthologEc-20_002150.1
Cds size1602
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6177.16877.1prot_Ecto-sp13_S_contig6177.16877.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6177 716..8303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463859.9536932-CDS-Ecto-sp13_S_contig6177:715..8381681463859.9536932-CDS-Ecto-sp13_S_contig6177:715..838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 716..838 -
1681463859.9664176-CDS-Ecto-sp13_S_contig6177:1350..14761681463859.9664176-CDS-Ecto-sp13_S_contig6177:1350..1476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 1351..1476 -
1681463859.976086-CDS-Ecto-sp13_S_contig6177:2008..21071681463859.976086-CDS-Ecto-sp13_S_contig6177:2008..2107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 2009..2107 -
1681463859.9857063-CDS-Ecto-sp13_S_contig6177:2368..25181681463859.9857063-CDS-Ecto-sp13_S_contig6177:2368..2518Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 2369..2518 -
1681463859.9953609-CDS-Ecto-sp13_S_contig6177:3197..33591681463859.9953609-CDS-Ecto-sp13_S_contig6177:3197..3359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 3198..3359 -
1681463860.0059967-CDS-Ecto-sp13_S_contig6177:4019..41661681463860.0059967-CDS-Ecto-sp13_S_contig6177:4019..4166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 4020..4166 -
1681463860.016272-CDS-Ecto-sp13_S_contig6177:4757..49131681463860.016272-CDS-Ecto-sp13_S_contig6177:4757..4913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 4758..4913 -
1681463860.0265422-CDS-Ecto-sp13_S_contig6177:5609..57051681463860.0265422-CDS-Ecto-sp13_S_contig6177:5609..5705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 5610..5705 -
1681463860.0372086-CDS-Ecto-sp13_S_contig6177:6106..62231681463860.0372086-CDS-Ecto-sp13_S_contig6177:6106..6223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 6107..6223 -
1681463860.0475752-CDS-Ecto-sp13_S_contig6177:6789..69551681463860.0475752-CDS-Ecto-sp13_S_contig6177:6789..6955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 6790..6955 -
1681463860.0567558-CDS-Ecto-sp13_S_contig6177:7641..77241681463860.0567558-CDS-Ecto-sp13_S_contig6177:7641..7724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 7642..7724 -
1681463860.0671759-CDS-Ecto-sp13_S_contig6177:8126..83031681463860.0671759-CDS-Ecto-sp13_S_contig6177:8126..8303Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6177 8127..8303 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463860.0767403-UTR-Ecto-sp13_S_contig6177:8303..83091681463860.0767403-UTR-Ecto-sp13_S_contig6177:8303..8309Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6177 8304..8309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6177.16877.1

>prot_Ecto-sp13_S_contig6177.16877.1 ID=prot_Ecto-sp13_S_contig6177.16877.1|Name=mRNA_Ecto-sp13_S_contig6177.16877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=534bp
MRTYTGDQTSSIAMAMAKCDPLGPLMINVVKLYSTPDGEAFTALGRVYSG
AVRTGQKVKVLGEAYSTHDEEDMAVKEVTAISISQGRTVMDINIAKAGNW
VLLEGVDASIHKTATICEAEEGGLGGGEEAAIFRPLSFKTTSVIKLAVEP
LNPSDLPKLVEGLRKISKSYPLAHTKARSPAVEESGEHVVLGTGELYMDC
VMHDLRVMYADAEVKVADPSTAFCETVVETSSLKCFSETPNKRNKLTMIA
EPLENGLAVDIESGEVSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPEN
DGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKF
KILDAVIAAEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPIFRVEVQAP
ADVVSAIYPALQKRRGHVDAPKPGAPFYTVKAFIPSIDSFGFETDLRAYT
QGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVKTRRRK
GLSEDVSINKFFDDPMLMELARQQAEMGAGGMM*
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mRNA from alignment at Ecto-sp13_S_contig6177:716..8309-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6177.16877.1 ID=mRNA_Ecto-sp13_S_contig6177.16877.1|Name=mRNA_Ecto-sp13_S_contig6177.16877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6177:716..8309- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGATAATGAGGACCTACACCGGCGACCAGACCTCGTCCATTGCGATGGC
CATGGCCAAGTGCGACCCCCTCGGGCCCCTCATGATCAACGTGGTGAAGC
TGTACTCCACGCCGGACGGAGAGGCGTTCACTGCCTTAGGGCGTGTTTAC
AGCGGGGCTGTAAGAACGGGGCAGAAGGTCAAGGTGAGAGTATTTTCTTT
CGCCATCTCACGTGTGTAGGATAAACGCGGCTCACCGGTAAAGCCGTTTC
TGTTTTTTCTTCGTACAGCACACCGGATTCGTATGTATGTTAAGATAAGG
GTTTGGGAATTTTATTTGGGGGGAGGGGGAGGGCTAGGCGTTTCGTTGTG
TTTCTAAACAGGAACAGCGTCAAGGATATGAAAACGAAGATATTGGAAAT
CTCGTGGAGTGCGTTTGGAATGAGATGAGCGGGCATCTGTCTTTTTGGTT
CCATGTGCGATATCTTGGACGTGGGCAGGCGATCCGATCCCTCTGCAAGA
CGCCCAACGCTCCGTGACACTAGGTGAACCGGCGGCTAATCTTAGCACAC
CATGCTTTTCTCTGCAAACTGTTGTTGGTTTTCAGGTGCTTGGGGAGGCG
TACTCAACGCACGACGAGGAGGACATGGCGGTCAAGGAAGTCACGGCCAT
CAGCATCAGCCAGGGCAGGTACCTACTTTGAGACCCACGGCTTTTGTTTT
CCATCTCTGGAACGTTTTTGCGTTTGCCGTGTCGTTGTGTGTTTCGTTGG
ACCAGGAGCATTGCTCTTGAAGTGCTGAGATGGGATGCGGTCGCGACGAA
GGTTTTGAGCTGTGATGGGCGAGTACGTTGGCTTTCCGAGGTTGCATGGG
GGGGGGGGGGGGGGGGGGGGGTCGTGTTGGCGACAGCCGCGGTCTTCGGC
CACGAACGGCGGTTCCATCGCTTACATGGTGGGGGGGGGAAGTAATGCTC
TCAACGGTTTTAAAGTCCTTTTTTCTGGTCTCTTTTCTCATCTCATGGCT
CGTGTCACACCAGCATCAGTCTGGGCTCACGTGCTGCTCAACCCACGACA
TTTCCGGACGTGTCCAAGCGTTTCAATGTCTAATCGTTGTTTACACACAC
GCACACGCGTGGCGAAAACAGGCAAGGTTTCTCTTGGGCGGTGATGGCAT
CAGCCTACAACTCAATCAAGGATCGGAGGCCCGGCAACTGTTTATCTCGC
CCCTCCAAAAAATACCTGGAGTGCTTCGTGCCTACTTCGGGATGCGAGAT
CAAAGTACTAACGATTACGGCATGCACGGCTATGAGCACACACACACCCT
TCCCAATGTCTCTACCCTCCACCGCCCCTCCATCGCGTGCGCCCTTTCTC
TCAGGACGGTGATGGACATCAACATTGCGAAGGCCGGCAACTGGGTGTTG
CTGGAGGGGGTGGACGCGTCGATCCATAAGACGGCCACCATCTGTGAAGC
TGAGGAAGGCGGTCTGGGGGGAGGGGAGGAGGCGGCCATCTTCCGGCCCC
TGTCGTTCAAGACTACGTCGGTGAGACGAGAGATTGCGCGGTGGCGTGTG
CGGCTTGAGTTTCGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGACGATGACCACCTCGCCTTCACCCGTGTGCATCTG
CAAGTAAACCCTTTGTTGTCATGGAAGCGTTTTGATATGTAGAAAAGTCG
TTCGAGGTATCGCGTCCGCTTCATTTTTTCAAGCGACGATACGATGATTT
GAACATTTTCGTGCCGAATTGTATGTCCCTGTGCAGGTGATCAAGTTGGC
GGTGGAGCCGCTGAACCCTTCCGACTTGCCGAAGCTTGTGGAGGGACTCC
GCAAGATCAGCAAGAGCTACCCGCTCGCACACACCAAGGCAAGATCGCCC
GCGGTCGTTTTGAAGTCTCCAGGCGGGAGGTTTTCAACGCTTTGTTTGAT
CAAGTCACGATGGCAATGAGGAGTATGGACGCTCATGTTGTCATCTACTG
CTGTTGTTTCTGTTGTTATCTACTGTGGTCATTCTCCGTCACGGGATGGG
TAGATTTCCAGGGCATTTAATAGCTGCGTCTTTCTTGTATTGTCGCAAGC
GCGATAGTGGCCGTGTTTTTCTGGTTGATGTTTTTTTCCCTTTTTTGTTT
CCGCTCAGTCTTGTAAGCCCTGACCACGCTCTCCTCGCTCTACTGCTGCG
TGTTTTTCTGGTTGATGTTTTTTTCCCTTTTTTGTTTGCGTTCAGTCATG
TGAGCCCTGAACACGCTTCCCTCGCTCTACTGCTGCTGTTGGTCGGGGTG
TCAGGTGGAAGAGTCCGGCGAGCACGTGGTTCTTGGGACAGGCGAGCTGT
ACATGGACTGCGTCATGCACGACCTCAGGGTCATGTACGCCGACGCCGAG
GTGAAGTGGCAGCCGGAAACATCCTCTCTGACAAATGCAATCCACCCTTC
TTTTTGTATGAATGTTATCAAATGTTTTAACTCCGCGGGTTCTTCTTTAC
CCGTGACCCAGTCGTAGGGTAGAGTTTGGTTTACACCTGTAACGGTGTTG
ACACCCCCGCTGCTGCACCCTACAGATTTTTGCTTCCGCCCGCCGTATGT
CAACTCTGTAGTATACCTTCCAGCGGAGTTGGTGATGATGCATGTTGTGG
TGATGGAGCCCTACGCTTTTCTGGCGCTCTCTGTTGGAGAAGCGCGTAGC
GTGTGCTGAAAATGACAGCACAGACTGCAGAAGTGGATATTGGCAAGGTG
GCTAGTCCGCAGACGACCGTCGAGCAGTGTGGGGTAGCTGTGTGACAAAG
GACCGACTTGTTGCCATTCGAGTTAGTCACGTGGATCGATGAAAGGGAAC
TTGAGTGGTGCTACGGTGATGGCGAGCGACACGGCAGACAAAGCGCTACG
TAGGCCTACGCGCGAACCTATGCGCGTGCGACGAACACCATCAAATACCA
TCTTTTAACAACAGCATCATCGGCAGCGCTGTATCATAGCAACACGCCCA
GTAAATCGACAGCACTATTCAGAGCAACACACACGCCAAGAGCCAACCAC
AGCAACCAGGAACCATATCGACACGGTGATGGTTACGACACAACAGGTGA
AGGTGGCCGACCCTTCGACGGCGTTCTGCGAGACGGTGGTGGAGACGTCC
TCCCTCAAGTGCTTCTCCGAGACACCCAACAAGAGGAACAAGCTCACCAT
GATCGCGGAGCCCCTCGAGAATGGGCTGGCAGTCGACATCGAGTCCGGAG
AGGTACGTGTATTCGTGTCTGTAACTGCAGTCGTAGCGAACCGTGCGTAA
TCGCACCGCGTTTATCTGCATGCAACTGGAACCGCATCGTGAGAAGTTGT
ACAACCACACCGTGCACAATTTTGGACGGTGGTACCATTGTTTCGTGTAT
GCAACTGCTGTAGGGGAGAGGGCCGTGCACCATGCTTACTTGCACCGCGC
TGTATGTATGAACCTGGGACCGCATCTTACAAAGGTGGCGTAGATATTTA
GACGCTTAGGGGATCAGTACACGGGACGGGGTGGTCGTCGGCATCGAGTG
TCCTGGAGAGAGTTGTTCCACTCGAGTTACCACGAAGACTCTAAGAAGAG
GGGGGCGGGAAGACGTGTGTCAAGAATGATGGTAAAGATATTTTTGCAAC
AGCAAAACTCTTCGAACCGACTCCATTTTACGAGTACGGGTTGATCGACA
CCAACACGGTTACCGTAGAAGAGCAGTCGAGAGAGTTTGGGGCCGAAGAC
GACTAAAAAAGGTACAGTAGACAGCCAGTATGACAGCACTTGTGACAACC
AACCCTTTGTGGTGTGTGTGCATGCTGATTTGCACCAAAACAGGTGAGCA
TCGAGTGGGACCGGAAAACTCTGGGAGAGTTCTTTCAGTCCAAGTACGAC
TGGGACCTGCTGGCTGCGAGATCCATCTGGGCCTTCGGGCCTGAGAACGA
CGGGCCTAACATCCTCGTGGACGACACTCTTCCCAGCGAGGTATTGCTAC
TTTGGTATTGCGAAAGGGCTGGCAGGGTGGGTCTGCGGCCATGTTCTTGC
GCGCCTGCTTTGTGCTGTGGTGTGTGTGTGTTTCTGTGTGTCTTTTGTTT
GCATCGACCGGTCTAATCGGAAAAATACGTAATTCTCCTGGATATATGAC
ACGGAACACTTTGTTTGCGTGTGTGTGTTTTCGGTTTGAGAACGGATGCA
CCGCAGCTTCGTAGCTTTCCGTCATGGAGCCTGACTGACATCGTTGCCAA
GCAAGGACTTCACCGGAGCACGTGGGGTCTTCACCAATCGGTCGGGGGGA
CGGGGGGCAGTCGAAGGAAAGATGGACCTTTTTTCTCTGACGGTCCACTT
CATAGGGATCAGTACTCATCTCGTGGAGGGACTACTGTGTGTGGGCCAGG
ACGGTGTTGTTGTTAAGATAAAAAGCAACAATCAACTTGGCAGTGACAAC
GAGAACTGCAGCAGTCTCTGCCCTACCACCCGCTGTTCCAATACGACACC
ATCGATGGGGATAGATTCAAAACGGCTTCGTGCCAAGCCAAGCACCGACT
ATTCTCAACCTGGCTACTGCCGCCCGCCTTCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTTTCGCGGCTCCGCGCTTGTCCTTGCATGCAG
GTCGACAAAAACCGCCTGAACGCTTGCCGCGAGAGCATCGTACAGGGCTT
CCAGTGGGGATGTAGGGAGGGACCGCTCTGCGATGAGCCTATCCGTAACG
CCAAGTTCAAGATCCTGGACGCGGTGATCGCGGCAGAACCTATCCACCGG
GGGGGGGGACAGGTGCGCGAAGGTCCTAAATAGTTAGCACTTGAGGTGGG
CTGTGGGCTGTGGACTTTGGGCTGCGCGCTTGGATCGGTCGAAAGTTTTC
TTGCGCACTCGTAGCTGCTTGCAATAGACGCCAACAGCCCAAAAGCTCGT
CCATGTGCCACAGAAGGAAAATATCGGGCTCGTCTCCAGTGTCTGGACCA
TTGTTAAGCCTTACCTGTATTGAATGCAATGCTTCGAGGATTAAGTTACT
TGATTTTTCTGTGTATCTAGGCGAGGCTAGGTGAAAAGCACACGCGAAAC
AGGGATTTCACTGTTTTCGTGATAGTACGCGGTACATAGGTTCCTAGGGG
TTTGGCGTCAAAATCCCAGCCTTCACCCATAACCCTAGAAGTAGTTGGGG
GCTTCCTCCGAAGTAATCGAGGTTCTCCTAAAGATTGTATCAGGATTATT
ACCCAAGCGCCACTTCGATCGTTCTATACCATGGCTAACAGCAACGACGT
ATCGCCTAGCTTCAATATGCTAGACTCGGTGACCGCGGCGGCGGAACGTT
TCCACCGGAGGGCGGGGGGGCAGGTCCGCGCGCGGTCCCATATAGCACTG
GCTGTGGAGCCGTGTGGCGTTGTCTCTGGGGCCTACCCGTTGGTGGTCGC
GGAGGGTGTCAAACAACACGTGCGTGTCTTGTCTGTGTCAGGTTATTCCG
ACGGCGAGGAGGGTGGCGTACTCGGCCTTCTTGATGGCGACGCCACGGCT
CATGGAGCCCATCTTCCGGGTGGAGGTGCAGGCGCCAGCGGACGTGGTTT
CGGCCATCTACCCGGCTCTTCAGAAGAGGAGAGGACACGTCGTTCAGGCA
AGACGGAAGAGAGGCTAGATGAGGAATAAACGTATCGAAAAAGGGCGTGT
GGAAAAGACAGAAAACTGAAACTAATCGCAAAAAAAATTCCTCGAGAAAG
AAAGACCGGTTTGGAAGACGTTATATTCAAATTATAGAGGGAAGAATGAT
GCCTGTTGTATTATAGAAAGTGAGTGTGTGCGTGGCAAGACTGCTGCTGT
TGATGTGCTTAACTGTTTTTCCGTGTTGTTGTGTGGCGCTCTTGGCGTGC
AGGACGCTCCAAAGCCGGGGGCACCTTTCTACACAGTGAAGGCGTTCATC
CCCTCGATCGACTCCTTCGGTTTCGAGACCGACCTCAGGGCCTACACGCA
GGTGCGCCTGGCGAATTTCCCGCCGTGCCTTTGCCATGACACCCTCGAGA
TGCGGGGCGAAGCGAAGCAGAGTGTTAAAAGTTTTTGTGTTTTCGCTTTC
TTTCCTCCCCACAATTTCTGAACGCAGTAGTTTGTGGGTGATGGTGCCTT
TCGTTCTTGACGCCTAACTTTCTTGCCTTGATCTTGTGGGAGTTGATGGT
TTTGTAGTTGGTAACATTTGCGAGAACCCAACCACTTTAGTACGCAACGC
TCAACGACAACTACACAAGAACGGCAGACACTGGTGTAGACTGCTGCGGT
TGTACCGTGCGGCCACCCCACATGTTCGTGAAGTTGGACGACACCCCATG
TGTACCCGCAACCGCGGCGGCAGCAGCACTGCTGTACGTAAGCCACACAA
AATCGACGATCTCGATGACTCAAAAATACCGCCAAACGATGCTGCTGCTT
CCTGTCTCTGACGCCGCGTTTGGTTGCTTGCTTGCTTTACCCGCTGTGTT
TTTTTCCCTTGCTTGCGTCGGTCGGGGTGTCAGGGCCAAGCCTTCTGCAC
ACAGGTGTTCGACCACTGGAGCATCGTGCCGGGGGACCCGCTGGACCGCA
ACATTATCCTGCACCCGCTTGAGCCGTCGCCTCCACAGCACCTCGCCAGG
GAGTTCATGGTGCGTTGCGGTGTTAATACTAAAAGCGGCAGCGTGTTTTG
GATTATTTTCGTGAGAGGAAAAACGTGTTTTGTGACGCCCGCCAGATGGT
TGTGGTGGAGAATTGGCAGCGGTACCCACAAGGCTCGCTGCCAGGCATGT
CGATCCCTTGTGTGGAGCATGTGCTGTTGCTTTTCCGTTTTTGCTTCCTA
GAGTCTTGGGCCGCTGGTCTGTGTGGCTTGCTTAGCTCCCTCTCTCGCCC
CCCCCCCTCCCCTTGCTTAATCTCCTGTCTCTGTCTCTCTATTTTCTCTT
AGGCACAGCTGCCGCGTAAAAGTGAGTTTTGCTTGACCGGACAAAAAAAC
AAAGAGGGTAGCTCTGTCTGTAGCTTACAGATCGCCGTCCTTTCTGTCAC
CCTTTGATGCCTTTGCTCCTTGCCTACTACAGTTCTACAGTGCTCCGCCA
TGTTTTCATGCGCGTTTCTCTTTGTCGTTGGCCACTTTTTTCTTATCATC
TATATATCACGCCACCCACAGGTCAAGACCAGACGCCGAAAGGGTCTAAG
CGAGGACGTTTCGATCAACAAGTTCTTCGACGACCCCATGCTCATGGAGC
TGGCCAGGCAACAGGCAGAGATGGGGGCAGGGGGCATGATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6177:716..8309-

>mRNA_Ecto-sp13_S_contig6177.16877.1 ID=mRNA_Ecto-sp13_S_contig6177.16877.1|Name=mRNA_Ecto-sp13_S_contig6177.16877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1602bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6177:716..8309- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGACCTACACCGGCGACCAGACCTCGTCCATTGCGATGGCCATGGC
CAAGTGCGACCCCCTCGGGCCCCTCATGATCAACGTGGTGAAGCTGTACT
CCACGCCGGACGGAGAGGCGTTCACTGCCTTAGGGCGTGTTTACAGCGGG
GCTGTAAGAACGGGGCAGAAGGTCAAGGTGCTTGGGGAGGCGTACTCAAC
GCACGACGAGGAGGACATGGCGGTCAAGGAAGTCACGGCCATCAGCATCA
GCCAGGGCAGGACGGTGATGGACATCAACATTGCGAAGGCCGGCAACTGG
GTGTTGCTGGAGGGGGTGGACGCGTCGATCCATAAGACGGCCACCATCTG
TGAAGCTGAGGAAGGCGGTCTGGGGGGAGGGGAGGAGGCGGCCATCTTCC
GGCCCCTGTCGTTCAAGACTACGTCGGTGATCAAGTTGGCGGTGGAGCCG
CTGAACCCTTCCGACTTGCCGAAGCTTGTGGAGGGACTCCGCAAGATCAG
CAAGAGCTACCCGCTCGCACACACCAAGGCAAGATCGCCCGCGGTGGAAG
AGTCCGGCGAGCACGTGGTTCTTGGGACAGGCGAGCTGTACATGGACTGC
GTCATGCACGACCTCAGGGTCATGTACGCCGACGCCGAGGTGAAGGTGGC
CGACCCTTCGACGGCGTTCTGCGAGACGGTGGTGGAGACGTCCTCCCTCA
AGTGCTTCTCCGAGACACCCAACAAGAGGAACAAGCTCACCATGATCGCG
GAGCCCCTCGAGAATGGGCTGGCAGTCGACATCGAGTCCGGAGAGGTGAG
CATCGAGTGGGACCGGAAAACTCTGGGAGAGTTCTTTCAGTCCAAGTACG
ACTGGGACCTGCTGGCTGCGAGATCCATCTGGGCCTTCGGGCCTGAGAAC
GACGGGCCTAACATCCTCGTGGACGACACTCTTCCCAGCGAGGTCGACAA
AAACCGCCTGAACGCTTGCCGCGAGAGCATCGTACAGGGCTTCCAGTGGG
GATGTAGGGAGGGACCGCTCTGCGATGAGCCTATCCGTAACGCCAAGTTC
AAGATCCTGGACGCGGTGATCGCGGCAGAACCTATCCACCGGGGGGGGGG
ACAGGTTATTCCGACGGCGAGGAGGGTGGCGTACTCGGCCTTCTTGATGG
CGACGCCACGGCTCATGGAGCCCATCTTCCGGGTGGAGGTGCAGGCGCCA
GCGGACGTGGTTTCGGCCATCTACCCGGCTCTTCAGAAGAGGAGAGGACA
CGTCGACGCTCCAAAGCCGGGGGCACCTTTCTACACAGTGAAGGCGTTCA
TCCCCTCGATCGACTCCTTCGGTTTCGAGACCGACCTCAGGGCCTACACG
CAGGGCCAAGCCTTCTGCACACAGGTGTTCGACCACTGGAGCATCGTGCC
GGGGGACCCGCTGGACCGCAACATTATCCTGCACCCGCTTGAGCCGTCGC
CTCCACAGCACCTCGCCAGGGAGTTCATGGTCAAGACCAGACGCCGAAAG
GGTCTAAGCGAGGACGTTTCGATCAACAAGTTCTTCGACGACCCCATGCT
CATGGAGCTGGCCAGGCAACAGGCAGAGATGGGGGCAGGGGGCATGATGT
GA
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