mRNA_Ecto-sp13_S_contig61765.16876.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61765.16876.1
Unique NamemRNA_Ecto-sp13_S_contig61765.16876.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig61765.16876.1 vs. uniprot
Match: D7G6W1_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.110e-28
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 NYMMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMKGILARAMLNEESTDVKNKVEEV 177
            NYMMFEVLETSWGTLQ SLDSALTLDDIIQAHKAYMKGILARAMLNEESTDVKNKVEEV
Sbjct:  721 NYMMFEVLETSWGTLQKSLDSALTLDDIIQAHKAYMKGILARAMLNEESTDVKNKVEEV 779
[Close]
BLAST of mRNA_Ecto-sp13_S_contig61765.16876.1 vs. uniprot
Match: A0A7S2MB43_9STRA (Spindle pole body component n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MB43_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.540e-10
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 NYMMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMKGILARAMLNEESTDVKNKVEEV 177
            NYMMFEVLE SW TLQ  L++A  LD++I AH  Y++ I+ +A+L+E++ +V +K+  V
Sbjct:  489 NYMMFEVLEESWTTLQKQLNAAENLDEVIGAHNEYLEAIIQKALLDEDTKEVLDKLHSV 547
[Close]
BLAST of mRNA_Ecto-sp13_S_contig61765.16876.1 vs. uniprot
Match: A0A6G0WYN0_9STRA (Spindle pole body component n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYN0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.680e-8
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 NYMMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMKGILARAMLNEES 147
            NYMMFEVLETSW TL   L+ A  LD +I+AH AY++ I A A + +E+
Sbjct:  636 NYMMFEVLETSWHTLVKELNQATNLDGLIEAHAAYLQRIKANAFITDEN 684
[Close]
BLAST of mRNA_Ecto-sp13_S_contig61765.16876.1 vs. uniprot
Match: A0A1W0A3C8_9STRA (Gamma-tubulin complex component n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3C8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.330e-8
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 NYMMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMKGILARAMLNEES 147
            NYMMFEVLETSW TL  S+ SA  LD++I++H AY+  I   A L +ES
Sbjct:  913 NYMMFEVLETSWHTLIKSIRSATDLDELIESHNAYLYTIKKNAFLMDES 961
[Close]
BLAST of mRNA_Ecto-sp13_S_contig61765.16876.1 vs. uniprot
Match: UPI000C781862 (gamma-tubulin complex component 3 homolog n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C781862)

HSP 1 Score: 57.0 bits (136), Expect = 5.850e-8
Identity = 22/55 (40.00%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    4 YMMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMKGILARAMLNEESTDVKNKV 168
            Y+ FEV+E  W TL   +D+A TL+D+IQAH+ ++  I++RA+L+  + +++N++
Sbjct:  441 YITFEVMECGWDTLVKQIDTAETLEDVIQAHEEFLSTIISRALLDHRTIEIRNQL 495
[Close]
BLAST of mRNA_Ecto-sp13_S_contig61765.16876.1 vs. uniprot
Match: A0A5B7JT24_PORTR (Gamma-tubulin complex component n=2 Tax=Heterotremata TaxID=116706 RepID=A0A5B7JT24_PORTR)

HSP 1 Score: 54.7 bits (130), Expect = 1.240e-7
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 YMMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMKGILARAMLNEESTDVK 159
            YM FEVLE +W  L N L +A +LDD+I AH  ++K I+A A+L+ ES +V+
Sbjct:   65 YMTFEVLECAWHDLMNLLKTAQSLDDVIAAHNHFLKRIVAGALLDAESKEVR 116
[Close]
BLAST of mRNA_Ecto-sp13_S_contig61765.16876.1 vs. uniprot
Match: A0A067C8N6_SAPPC (Spindle pole body component n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C8N6_SAPPC)

HSP 1 Score: 55.1 bits (131), Expect = 2.800e-7
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 NYMMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMKGILARAMLNEES 147
            NYMMFEVLETSW TL  ++ +A  LD++I AH AY+  I   A L +ES
Sbjct:  535 NYMMFEVLETSWHTLLKNVQAASDLDELIAAHHAYLYTIKKNAFLMDES 583
[Close]
BLAST of mRNA_Ecto-sp13_S_contig61765.16876.1 vs. uniprot
Match: A0A1V9YEE9_9STRA (Spindle pole body component n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEE9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.840e-7
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 NYMMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMKGILARAMLNEES 147
            NYMMFEVLETSW TL  ++  A  LD++I++H AY+  I   A L +ES
Sbjct:  618 NYMMFEVLETSWHTLLKNIKMASDLDELIESHNAYLYTIKKNAFLMDES 666
[Close]
BLAST of mRNA_Ecto-sp13_S_contig61765.16876.1 vs. uniprot
Match: A0A0N7ZBX6_SCYOL (Gamma-tubulin complex component n=2 Tax=Portunidae TaxID=6757 RepID=A0A0N7ZBX6_SCYOL)

HSP 1 Score: 54.7 bits (130), Expect = 3.850e-7
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 YMMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMKGILARAMLNEESTDVK 159
            YM FEVLE +W  L N L +A +LDD+I AH  ++K I+A A+L+ ES +V+
Sbjct:  709 YMTFEVLECAWHDLMNLLKTAQSLDDVIAAHNHFLKRIVAGALLDAESKEVR 760
[Close]
BLAST of mRNA_Ecto-sp13_S_contig61765.16876.1 vs. uniprot
Match: S8E723_9LAMI (Gamma-tubulin complex component n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8E723_9LAMI)

HSP 1 Score: 53.9 bits (128), Expect = 7.210e-7
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    4 YMMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMKGILARAMLNEESTDVK 159
            Y+MFEVLE SW     +L+ A  LDD++ AH+ Y+K I+ +++L E+S  +K
Sbjct:  714 YIMFEVLEVSWSNFSKALEVARDLDDLLAAHEKYLKSIVEKSLLAEQSHSLK 765
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61765.16876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W1_ECTSI2.110e-2898.31Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
A0A7S2MB43_9STRA1.540e-1049.15Spindle pole body component n=2 Tax=Dictyocha spec... [more]
A0A6G0WYN0_9STRA1.680e-855.10Spindle pole body component n=1 Tax=Aphanomyces eu... [more]
A0A1W0A3C8_9STRA4.330e-857.14Gamma-tubulin complex component n=1 Tax=Thraustoth... [more]
UPI000C7818625.850e-840.00gamma-tubulin complex component 3 homolog n=1 Tax=... [more]
A0A5B7JT24_PORTR1.240e-750.00Gamma-tubulin complex component n=2 Tax=Heterotrem... [more]
A0A067C8N6_SAPPC2.800e-755.10Spindle pole body component n=2 Tax=Saprolegnia Ta... [more]
A0A1V9YEE9_9STRA3.840e-753.06Spindle pole body component n=1 Tax=Achlya hypogyn... [more]
A0A0N7ZBX6_SCYOL3.850e-750.00Gamma-tubulin complex component n=2 Tax=Portunidae... [more]
S8E723_9LAMI7.210e-744.23Gamma-tubulin complex component n=1 Tax=Genlisea a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61765contigEcto-sp13_S_contig61765:427..609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score110.9
Seed ortholog evalue2e-22
Seed eggNOG ortholog2880.D7G6W1
Preferred nameTUBGCP3
Model size183
KEGG koko:K16570
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000922,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005824,GO:0005825,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007140,GO:0007163,GO:0007276,GO:0007338,GO:0008017,GO:0008092,GO:0008150,GO:0008275,GO:0008360,GO:0009566,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030863,GO:0030981,GO:0031023,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032501,GO:0032504,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0044703,GO:0044732,GO:0046785,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0061496,GO:0061497,GO:0065003,GO:0065007,GO:0065008,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0071957,GO:0071963,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903046,GO:1903047
Exons1
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2000@1,KOG2000@2759
Cds size177
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463859.9019916-CDS-Ecto-sp13_S_contig61765:426..6031681463859.9019916-CDS-Ecto-sp13_S_contig61765:426..603Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61765 427..603 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463859.918484-UTR-Ecto-sp13_S_contig61765:603..6091681463859.918484-UTR-Ecto-sp13_S_contig61765:603..609Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig61765 604..609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61765.16876.1prot_Ecto-sp13_S_contig61765.16876.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61765 427..603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61765.16876.1

>prot_Ecto-sp13_S_contig61765.16876.1 ID=prot_Ecto-sp13_S_contig61765.16876.1|Name=mRNA_Ecto-sp13_S_contig61765.16876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMKGILARAMLNEESTDV
KNKVEEVST
back to top

mRNA from alignment at Ecto-sp13_S_contig61765:427..609-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61765.16876.1 ID=mRNA_Ecto-sp13_S_contig61765.16876.1|Name=mRNA_Ecto-sp13_S_contig61765.16876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61765:427..609- (Ectocarpus species13 EcNAP12_S_4_19m)
AACTACATGATGTTCGAGGTGCTGGAGACTTCGTGGGGCACTCTGCAGAA
CAGCCTCGACTCCGCCCTCACCCTGGACGACATAATCCAAGCGCACAAGG
CCTACATGAAGGGCATCCTTGCCAGGGCTATGCTGAACGAAGAGAGCACG
GACGTGAAGAACAAGGTGGAGGAGGTTAGTACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61765:427..609-

>mRNA_Ecto-sp13_S_contig61765.16876.1 ID=mRNA_Ecto-sp13_S_contig61765.16876.1|Name=mRNA_Ecto-sp13_S_contig61765.16876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61765:427..609- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTTCGAGGTGCTGGAGACTTCGTGGGGCACTCTGCAGAACAGCCT
CGACTCCGCCCTCACCCTGGACGACATAATCCAAGCGCACAAGGCCTACA
TGAAGGGCATCCTTGCCAGGGCTATGCTGAACGAAGAGAGCACGGACGTG
AAGAACAAGGTGGAGGAGGTTAGTACG
back to top