prot_Ecto-sp13_S_contig1198.1687.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1198.1687.1
Unique Nameprot_Ecto-sp13_S_contig1198.1687.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length149
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1198.1687.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.780e-65
Identity = 111/140 (79.29%), Postives = 121/140 (86.43%), Query Frame = 0 
Query:    1 LWGVVGSRSKSSSLMSLCGMAGDTPVDLYEQSGFGLSVIDRIVDHHPFHMLGSALFYCPHRHHLPGSDTTTRRSGVMLRAVGETLVVDSLFFALSMLTENWEDGVSIGVLSLIFSVLELLTELQYYAAEARANMVTDGEE 140
            +W VVGSRSKSSSLM LCGMAG TPVD  EQSGFGLS+IDRIVDHHP+ +LG ALF  PH HHLPGSD  TRRS VM+RAVGETLVVDSLF ALS+ +E WEDGVSIG+ SLIFSVLELLTELQYY +EARA+MVT GEE
Sbjct:  291 MWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLPGSDEATRRSWVMVRAVGETLVVDSLFLALSLSSETWEDGVSIGIFSLIFSVLELLTELQYYVSEARADMVTGGEE 430
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1198.1687.1 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.180e-6
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0 
Query:   76 VMLRAVGETLVVDSLFFALSMLTENWEDGVSIGV--LSLIFSVLELLTELQYYAAEARA 132
            VM+R+VGETLVVD LF ALS ++    DG   G+  +S +FS L+LLTEL+YY   A A
Sbjct:  314 VMVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASA 372
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1198.1687.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFA4_9PHAE1.780e-6579.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME9_9PHAE1.180e-654.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..75
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 76..98
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..121
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 99..103
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 122..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1198contigEcto-sp13_S_contig1198:15478..15924 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1198.1687.1mRNA_Ecto-sp13_S_contig1198.1687.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1198 15478..15926 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1198.1687.1 ID=prot_Ecto-sp13_S_contig1198.1687.1|Name=mRNA_Ecto-sp13_S_contig1198.1687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
LWGVVGSRSKSSSLMSLCGMAGDTPVDLYEQSGFGLSVIDRIVDHHPFHM
LGSALFYCPHRHHLPGSDTTTRRSGVMLRAVGETLVVDSLFFALSMLTEN
WEDGVSIGVLSLIFSVLELLTELQYYAAEARANMVTDGEEVVGAEEADR
back to top