mRNA_Ecto-sp13_S_contig1198.1687.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1198.1687.1
Unique NamemRNA_Ecto-sp13_S_contig1198.1687.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1198.1687.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.780e-65
Identity = 111/140 (79.29%), Postives = 121/140 (86.43%), Query Frame = 1 
Query:    1 LWGVVGSRSKSSSLMSLCGMAGDTPVDLYEQSGFGLSVIDRIVDHHPFHMLGSALFYCPHRHHLPGSDTTTRRSGVMLRAVGETLVVDSLFFALSMLTENWEDGVSIGVLSLIFSVLELLTELQYYAAEARANMVTDGEE 420
            +W VVGSRSKSSSLM LCGMAG TPVD  EQSGFGLS+IDRIVDHHP+ +LG ALF  PH HHLPGSD  TRRS VM+RAVGETLVVDSLF ALS+ +E WEDGVSIG+ SLIFSVLELLTELQYY +EARA+MVT GEE
Sbjct:  291 MWVVVGSRSKSSSLMRLCGMAGYTPVDRLEQSGFGLSLIDRIVDHHPYSLLGRALFSYPHGHHLPGSDEATRRSWVMVRAVGETLVVDSLFLALSLSSETWEDGVSIGIFSLIFSVLELLTELQYYVSEARADMVTGGEE 430
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BLAST of mRNA_Ecto-sp13_S_contig1198.1687.1 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.180e-6
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:  226 VMLRAVGETLVVDSLFFALSMLTENWEDGVSIGV--LSLIFSVLELLTELQYYAAEARA 396
            VM+R+VGETLVVD LF ALS ++    DG   G+  +S +FS L+LLTEL+YY   A A
Sbjct:  314 VMVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASA 372
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1198.1687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFA4_9PHAE1.780e-6579.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME9_9PHAE1.180e-654.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1198contigEcto-sp13_S_contig1198:15478..15926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size450
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462635.052193-CDS-Ecto-sp13_S_contig1198:15477..159241681462635.052193-CDS-Ecto-sp13_S_contig1198:15477..15924Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1198 15478..15924 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1198.1687.1prot_Ecto-sp13_S_contig1198.1687.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1198 15478..15924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1198.1687.1

>prot_Ecto-sp13_S_contig1198.1687.1 ID=prot_Ecto-sp13_S_contig1198.1687.1|Name=mRNA_Ecto-sp13_S_contig1198.1687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
LWGVVGSRSKSSSLMSLCGMAGDTPVDLYEQSGFGLSVIDRIVDHHPFHM
LGSALFYCPHRHHLPGSDTTTRRSGVMLRAVGETLVVDSLFFALSMLTEN
WEDGVSIGVLSLIFSVLELLTELQYYAAEARANMVTDGEEVVGAEEADR
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mRNA from alignment at Ecto-sp13_S_contig1198:15478..15926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1198.1687.1 ID=mRNA_Ecto-sp13_S_contig1198.1687.1|Name=mRNA_Ecto-sp13_S_contig1198.1687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=449bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1198:15478..15926+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTGGGGTGTGGTGGGATCACGGTCGAAGTCGAGCTCGTTGATGTCTTT
GTGTGGAATGGCAGGGGACACACCGGTGGATTTATATGAGCAATCTGGGT
TTGGTCTGTCGGTGATTGACAGAATCGTAGACCATCACCCGTTTCATATG
CTTGGCAGCGCACTATTTTACTGCCCCCATCGGCACCACCTTCCTGGTTC
CGACACGACCACGCGTAGATCAGGGGTGATGCTCCGAGCGGTCGGGGAGA
CATTGGTGGTTGACTCGCTGTTTTTTGCGCTTTCTATGTTAACCGAGAAT
TGGGAAGACGGTGTGTCGATTGGGGTTTTGTCATTGATCTTCTCGGTGTT
GGAGTTGCTCACGGAACTGCAGTACTACGCCGCAGAGGCCAGGGCGAACA
TGGTGACGGATGGGGAGGAAGTAGTGGGCGCAGAAGAGGCCGACCGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1198:15478..15926+

>mRNA_Ecto-sp13_S_contig1198.1687.1 ID=mRNA_Ecto-sp13_S_contig1198.1687.1|Name=mRNA_Ecto-sp13_S_contig1198.1687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1198:15478..15926+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTGGGGTGTGGTGGGATCACGGTCGAAGTCGAGCTCGTTGATGTCTTT
GTGTGGAATGGCAGGGGACACACCGGTGGATTTATATGAGCAATCTGGGT
TTGGTCTGTCGGTGATTGACAGAATCGTAGACCATCACCCGTTTCATATG
CTTGGCAGCGCACTATTTTACTGCCCCCATCGGCACCACCTTCCTGGTTC
CGACACGACCACGCGTAGATCAGGGGTGATGCTCCGAGCGGTCGGGGAGA
CATTGGTGGTTGACTCGCTGTTTTTTGCGCTTTCTATGTTAACCGAGAAT
TGGGAAGACGGTGTGTCGATTGGGGTTTTGTCATTGATCTTCTCGGTGTT
GGAGTTGCTCACGGAACTGCAGTACTACGCCGCAGAGGCCAGGGCGAACA
TGGTGACGGATGGGGAGGAAGTAGTGGGCGCAGAAGAGGCCGACCGG
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