mRNA_Ecto-sp13_S_contig6173.16870.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6173.16870.1
Unique NamemRNA_Ecto-sp13_S_contig6173.16870.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6173.16870.1 vs. uniprot
Match: D7FJ61_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ61_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 6.820e-93
Identity = 177/202 (87.62%), Postives = 184/202 (91.09%), Query Frame = 1 
Query:    1 MAMPGGGYGGYXXXXXYNHAGSNGVXXXXXXXXXSYGGKGGVGMMDGRHQEEXXXXXXXXLRELEDRVRQLENEKHIHQHLAHDTQAKLEMRAVAHLEVERGVRRMQQAHEEKVKAFLLKAQEINEDCRIRDNKIKELQQINHDMDEEMAQALTKRKETVEQVKREEREAFRNQERSEERSRRHASSSGHYGSSSGDYSSGG 606
            MAMPGGGYGGY     YNHAGSNGV   XXXXX +YGGKGGVGMMDGRHQE  XXXXXX L  LE  V QLENEKH+ QHLAHDTQAKLEMRAVAHLEVERGVRRMQQAHEEK+KAFLLKAQ+INEDCRIRDNKIKELQQI+HDMDEEMAQALTKRKETVEQVKREEREAFRNQERSEERS+RHASSSGHYGS+SGDYSSGG
Sbjct:    1 MAMPGGGYGGYGGGDGYNHAGSNGVHSSXXXXXHTYGGKGGVGMMDGRHQE--XXXXXXDLSGLEALVLQLENEKHMDQHLAHDTQAKLEMRAVAHLEVERGVRRMQQAHEEKIKAFLLKAQDINEDCRIRDNKIKELQQISHDMDEEMAQALTKRKETVEQVKREEREAFRNQERSEERSKRHASSSGHYGSASGDYSSGG 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6173.16870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ61_ECTSI6.820e-9387.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6173contigEcto-sp13_S_contig6173:1344..7670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size905
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_000220.1
Cds size669
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463859.3966656-CDS-Ecto-sp13_S_contig6173:1343..14001681463859.3966656-CDS-Ecto-sp13_S_contig6173:1343..1400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6173 1344..1400 +
1681463859.4080389-CDS-Ecto-sp13_S_contig6173:5330..55431681463859.4080389-CDS-Ecto-sp13_S_contig6173:5330..5543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6173 5331..5543 +
1681463859.4189713-CDS-Ecto-sp13_S_contig6173:6618..67711681463859.4189713-CDS-Ecto-sp13_S_contig6173:6618..6771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6173 6619..6771 +
1681463859.431993-CDS-Ecto-sp13_S_contig6173:7188..74341681463859.431993-CDS-Ecto-sp13_S_contig6173:7188..7434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6173 7189..7434 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463859.441578-UTR-Ecto-sp13_S_contig6173:7434..76701681463859.441578-UTR-Ecto-sp13_S_contig6173:7434..7670Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6173 7435..7670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6173.16870.1prot_Ecto-sp13_S_contig6173.16870.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6173 1344..7434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6173.16870.1

>prot_Ecto-sp13_S_contig6173.16870.1 ID=prot_Ecto-sp13_S_contig6173.16870.1|Name=mRNA_Ecto-sp13_S_contig6173.16870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=223bp
MAMPGGGYGGYGGGDGYNHAGSNGVHSSTNGGHHSYGGKGGVGMMDGRHQ
EEEEEEDEEDLRELEDRVRQLENEKHIHQHLAHDTQAKLEMRAVAHLEVE
RGVRRMQQAHEEKVKAFLLKAQEINEDCRIRDNKIKELQQINHDMDEEMA
QALTKRKETVEQVKREEREAFRNQERSEERSRRHASSSGHYGSSSGDYSS
GGGGGGGHSNRGWEWEWEWLQG*
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mRNA from alignment at Ecto-sp13_S_contig6173:1344..7670+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6173.16870.1 ID=mRNA_Ecto-sp13_S_contig6173.16870.1|Name=mRNA_Ecto-sp13_S_contig6173.16870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6173:1344..7670+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATGCCCGGTGGCGGCTACGGCGGGTATGGCGGGGGCGATGGCTA
CAATCACGTGAGTTTTGATTGGCTCCTCTGTGTCCTCATGTGCCCGGTTT
CTTTTTCGGCAAGGAGTGGGATTTACCCACTCGCATTTCTTACAGGCGTG
GGCCGGCGCCTCTCCTCTGCTGGACGGTTATATTCCGGCGGGATTTCCGG
TCTGGATATTTTTTCGGAGCACAGAATACGAATGTCACAACACTACAGCA
GTACAAGCCGTATAGAGTCGCCGGCGCTCCTTCGCCGACACCCTCACCGT
AAAAGAATCTCAATCACCCTTATCGCTATTGCAACGTGCCCTCTTTGAGG
TTTGCTATCATCGCCGAAAATTGCGTCGGAACAACGCTTGAATTTTTTCT
GGGCATGTGCTTCCAGCAGCAGCAGAGCAGTAGATGCGACATACGTAATA
ACCCAGTAGCCTTGAAAATGTCAGGAAACAAACCTAATGCAAAAAAGTTG
AAGTTTCACTTCCATGGTTGAGCCTTCTCCTCTAACTACGTACTTGCTGT
GCTTCTGTGGGTACAGCAGCGATTATGTGTTGACCATACCACGGTTGAAG
GCGGAATAACAAACCAGGGCGGCAGTTGCTTATGGTTAGGTTATGAGAGG
TCGGGATTGGACGCGGCACGGGCCGGGTGTAGAATAAGATTACTATTTAC
CACATTATTTGTACCCACATTACACATCGCAAAATGTTACCCTACTTACA
GCGGCAGCCAACTTTAGGGTTCGTCTATGAAATGATTTTCTCCTCTTCAG
CAGTCTAATTGTAGTGCAGCTTCCTGTCCTGAAAACCTAGGGGCCACCCG
TCCAACTTATGAAAGGTTTGTGTTTTTTCTTTTGCATAACCTCGGCGATA
GAAGTCAGTGCACGAAGTATACCATACCACAGCAGTCAACACAGCCATTT
GGGAATTAGCTCGGGTATTGTTGCAGCCATGGCAAGGAGAAAGAGAAACT
TCCTGTAGAAAAAATTAAAATGTACATTGTGTCGGTGGCTGTCGGCTGGC
CGCCACGATTGATGTACTCGCGTATTCTACATACGAGTACACATTCCCCA
ATGTCTGTATTGAACATACTTGGTACTTGTAGATACGATGGGAACGCGAT
TTGACAGAGGTCTTGCAATGTTTTTGTAGGGGTTGCTGCTATTCACGCTT
TGAGGACGACGCATAACAATGACGCGTGAAGCTAAACATGCATTTGTCGC
TCCAGGAATCATCACACAACACTTACTGATGTGATCAGAATCCGGATGGA
TTGGATTACGGACAAGTGAACAGACTGGGGAGGTGCCGGCATCATCCATT
ACACTGTGGCTTACACCATACCTACTAAAATAATAACCAAGCTGTCGCAG
GAATGATAGCCCGTCGCCTTATGCGTACGAGCTCAAGACTCGAAATCGAT
CCGTGAGACTTGGTCCCAACAGGAGAGAAACCATTTTTTTTGTGTGTTTG
CTTCCCCGGTAGTTTAATTGTTAATCGCGTTGGCCACGGCTTGCCGTCAT
CATCATCGCCAGCCACGCCATCTACAATCGACAGCAGCAGTCACCGCGGG
CGGGCCCGGAAATCGGAGCACACACGGTCCCTTAGCTCACTCGACAGCAG
CACTGCTGCTGTTACAGCTTTATCTATGTATCCAGAGAGAGTGCGGCGAG
ACCATCGCTCCGACGGAATCCCGCTATTCATCTTTTTAGCCGTCCCAGGA
TACTTCCCGCGCAGCGATGGGATAACATTACATCGAGCTTGTCGCGCTTG
TTGCGGGCCAACTGAAACGGAGACACTTTTAAGCCCCAGTCCAGAAGGCT
AGACGAACGAGTGGACTAAGCAACGGCTGAAGGTGGGTCGAACTATTTTT
CATGTTCGGCGCCATCTCAAAGGATACGCACAGATACGCGAGCTCTTGAA
TATTCGGATCAGTTATGAACCTAACACCGCCGGCGGATATTGGCGGAAAT
TTGCGGTTCCACAATCCGTCTAGTGATAGACTAGTACGGACAGAAGAAGG
TACTGAGCAGAGATAACGGAACGGTTTTTATTGTGAAGACATCAACGACA
ACAACACGCGCATTTTGTGAACCAAGCCGGTGTGTATTTTTCTGCGGAGG
ATGCGCCGACAGACTTCAAAGAAGACAGACCTGCGTCGAGCAGTCACGTC
TACGAGTAGCTATTGCTTATTTTTTCGGCATCACCCGAAGGTTGTGACAA
GCCCGAACAGTAGAAGAGAAGAGCAGCAGGATATGTTTGGGTTGGGGGTG
GCTACCTGGCGGTACCGCCGTTGGATGACCAGTACAGCAGTATTCGTATT
CAGCATTGGCATCTGTTACAGCATACAACAGTATGTCCAACCCAGAAAGA
TACTCGGTATAGTCTACCCCTCTTTGGGTTCTGCTGTAGTTGACTTGTGT
CCACGGAAGGCGCTGTCCGCGTCAGGTGCACTGGAACTGTATGGATATTG
GATGGCACCGACCGGAGATCGACCCGCTTTCAATGTGACAACAACAACAG
CTTCACAACCACCACATCCACAACCACCACCAACAACAACAACAACAACA
ACAGCAACCCGAGCGTCGAAGAGCAGCATGAAATGGTTGGGGGCATGAAA
CTACTGCACGTGCCGACATTGGTTGAGCCAGAGCCAGCCGGATCAAGTAT
TCAGCAGGTTTACTACACGAGTACTGCGCGAATTCCTCCTCGTGATCTCG
TCCCACAAACAATCGTGTTAAACATTTCTACGGTACCTGTTGGGGATAGG
CAGGCGGCAGTCGATTGCTTTGTCCGGTGTTGTTTCTTCGACAGGCATTG
CAGATTGCAGGGCCAGCACCTACAGTAGTAAATCTAGCGATGTAAGTGGG
GCGCGATGTCGCGGGCAACTTCGTTTTTTTTTCTTTTTCGGTGGGTGGTG
GTGCCAGGAAAGGAAGAGCTGACCCATCCATTGCGTCTCTGTCCGCTCGC
ACTGGCTGTAGGATGTTTGATGGCATACAGCAGCAGTACGTTGGGATTGC
TGGCATCGGATGCCCACACGATGACAGTGCGGTGCGAGAATGAGGCGCTC
TACTCGGCCACAAGGTTATAGCTTAAGTTGGGATAGTAAAGCGACGTTCA
TGTCGAAAACAGAAAACACATCATCCAGCACAACTTTCTACACGAACGCC
ATAAAATGAGAATACATTTGGGTACGAGAAATTCATCCGTAGCAAGTTGA
GAGTAGGAGCCTTAGTCTTGCCGAACGATTGGTTCTCTAATGCGGATACT
TAACTGTACATGATCCACAATGCGGCGACATAACAAAGTAGTACATCATC
GACTGCAGTTGCTATCTGCTGAAGGGCTGCCTGGGCGCAGTCAAAAGAAA
AGCTGTCTTCTACCAACGCCGATCAGATGCACGAGACCACCTGTGGTATG
TGTGAGGGCTGCGGGTGTGATGCCCAGGTAAAGGGCGATCTGTACAGGTC
GGATCGTATGGGAATGACAAGTCGGGGCAGGTTGCTAACGCTTGGGGGGT
AAATTGAACATGCAGGAGTATACCGCCCTCCTCCACGGAAAGAACCGAAT
GGTCTCAATTCGGGAGCGGGCGGAAAGAACCGAAATGTCTCATTTCGGGA
GCGGGCGGACATGACCTCGGCCGGTCCACGCTGGTGCGTTCGGCCGTACT
TGATGCATACGTGTTATAGCGTGAAGAGCGCTGGAAGAAGCTACTGTCGT
TGGGGCCGTCAAGAGCCGGTGCTGCTAGGGCTTTCGCCGCCGTGCGTGCT
GTTGGCGGTCGACGTGCTGTGGTCGCGTCGATGACCAGACATGGCCAAGA
TTGTTTGCGAGATGAGCACGCCGAAACGGTACAATACCAGTCTCTGAGCA
GATAACACTTGGGAAAGAGGAAGGGCCCCACCTTAGCGCCTCACTGCTTG
CGGTTTTATTCTACCTCTGTACTTGTGCTGCTAACAGGCTGGTAGTAATG
GCGTTCACAGCAGCACCAACGGGGGTCACCACTCCTACGGGGGAAAGGGG
GGCGTGGGCATGATGGACGGAAGACATCAGGAGGAAGAGGAAGAGGAGGA
CGAGGAGGACCTGCGCGAATTGGAGGATCGCGTGCGTCAGCTAGAGAATG
AAAAACACATCCATCAACACCTCGCACACGATACGCAGGCCAAGCTTGAG
GTATGATGTGCACATCTGTCTCATCTCCTCCAGTACCGGGGATGGACCCT
GTCGTTGCCATTCTTGTTCTTTTCGTGTTCTACCGCCAGACGTGTTCTTC
GAGGTATTTGTTGCTTTATTCCCTCACCGACAGCAGTCGCATGGCATACT
CGGGGTTCGATGTCCTTGCCATGCTTTATTCCCTCACCGACAGCAGTCGC
ATGGCATACTCGGGGTTCGATGTCCTTGCCATGGCAATTCTGTAGAGGCT
TTTTCGAGTGTTGTAAGTTGTATGCTACCTTGGACGTGTTCAACCCCCAC
TCTGACACACTTCTACGATGTCAACCGATCGGTTGACCGACTGCTGTCAG
TAGTCTATATCGACAATCGTTGACCATGTGCATACGGTGCGGTCCTACGG
TGTAGTGTTCGCCCTCACCCACGCCTGCTTTACCGGTGCAGCAGTTATCC
CCGCCCAGCGTGCCGTTTTTTCGAGAAAGCTTCACGTACAAAACCACTCA
TTTAATTATTGAGACCGCTCGTGTATAAACGCTGCTTCTTCGATGTTTTG
GCACAAAAATGCTCTCGAAACCCGCTGCATTTTTTCATCCGCGAAACGTA
CACCAGTCAGATTGGGTCCCGCAGTAGTTTCGTTTGTGTTGTTTTCGATT
GTTCAAGCCTCCCAAACACGGGACCCAGTCGAACAGTGGTGTGTGGGCAT
GATGAGAGTACGTCCTTGTTGGTCCTGGCACTGTACCGCACGGTAAAATG
TTTGTCTCTGTGCGTAGCTCCTGGAAACGCTAGCCACTTTCACAGCTCGT
CATCTATTGTGTTGTTTTCTCGTCACCGCTAAAAAATTAAAAAGGGTCAA
GTCTCTCGAGAAAATAAGTGAAATGAGATGGTCCGGGGGGGGCGGGATTC
GCGGAAACACTTCGACCCCCAAGTGTCGGTTGGTAGGTAGTCAATCCGCT
TGAGAGCTGCAGCTCGTGAGACCAAACCCGGTAGGTGCAACACGTACACC
TTGGTTTCATCTAATTTGCATGTGTGGTTGCTCCGTAAGCCACCCCCTTC
CCCCCCCGATGCTCCGGTTCCGAAGATGCGAGCAGTAGCGCACCTTGAGG
TGGAGCGAGGCGTTCGAAGAATGCAACAGGCCCACGAGGAGAAAGTGAAA
GCCTTTCTACTCAAGGCGCAAGAGATCAACGAAGACTGCCGCATCCGCGA
CAACAAGATCAAGGAGCTTCAGCAGATTGTGAGTTTCTAGTTGTGAGGGG
GAGCGTGTATGTGTGAGCGGAGCTTCTTGTAGTTGGCATCGGCCGAGCTG
AGCCGTGGGTGTCTGTGTGAGAGTTCCTTTCAGTAGACATCGACCTCGCT
GAGTAGCTAGACAGCTCCTGTAATAGGCGTGTGCTTGTCATCCTACAAAT
TTTCTGTTCCCAATGCATAAGCTTGGGTCAGTCACGGCTACAGTCACTCA
GTACGACGGCCAGGCCACACGGCATAGATTTCCATTTTTACTTTTTTGTT
TTTTCCGACCTTACCGCTGCACGGCTTGCCTGTTTTTATCGCGAGACCAC
CCTCCAACCTCCATTGTAAACCTTCACGCGGTTGCGGTGCAATGTAACCT
CAGAAATCGCGGTCTTCTTTCATTTTTTGTTTCTCCCGTCAACAGAACCA
CGATATGGACGAGGAGATGGCGCAAGCCCTGACAAAGCGGAAGGAGACAG
TCGAACAGGTCAAGAGGGAGGAGAGAGAGGCTTTCCGGAACCAGGAACGG
TCTGAGGAGCGGTCCAGGAGGCATGCCTCCTCGAGCGGCCATTACGGCAG
CAGCAGTGGCGACTACAGCAGCGGCGGCGGCGGCGGTGGCGGCCATAGCA
ACAGGGGATGGGAATGGGAATGGGAATGGTTGCAAGGGTAGGGGACATGG
GTCGCCGCACCCAGTCGTCTTCAGGGGTTTCCTTTTCACCGCGGGGGGCG
TACGCGGGCAACGGGGTGGCGGGCGGGCGGGCGGGGGGGGGCAGAGGAAT
TGCGGCGGCGGGGAGAGATAGGGAGAGTGCGGGGGGGGCGGCGGCTCAGT
CCAACGCTCAACCGAAGCCCTTCGAACAGATCCGGCAGGCTTGCGTCGAA
GACACTCTGACGGATTTTTTCGGCTTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6173:1344..7670+

>mRNA_Ecto-sp13_S_contig6173.16870.1 ID=mRNA_Ecto-sp13_S_contig6173.16870.1|Name=mRNA_Ecto-sp13_S_contig6173.16870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6173:1344..7670+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATGCCCGGTGGCGGCTACGGCGGGTATGGCGGGGGCGATGGCTA
CAATCACGCTGGTAGTAATGGCGTTCACAGCAGCACCAACGGGGGTCACC
ACTCCTACGGGGGAAAGGGGGGCGTGGGCATGATGGACGGAAGACATCAG
GAGGAAGAGGAAGAGGAGGACGAGGAGGACCTGCGCGAATTGGAGGATCG
CGTGCGTCAGCTAGAGAATGAAAAACACATCCATCAACACCTCGCACACG
ATACGCAGGCCAAGCTTGAGATGCGAGCAGTAGCGCACCTTGAGGTGGAG
CGAGGCGTTCGAAGAATGCAACAGGCCCACGAGGAGAAAGTGAAAGCCTT
TCTACTCAAGGCGCAAGAGATCAACGAAGACTGCCGCATCCGCGACAACA
AGATCAAGGAGCTTCAGCAGATTAACCACGATATGGACGAGGAGATGGCG
CAAGCCCTGACAAAGCGGAAGGAGACAGTCGAACAGGTCAAGAGGGAGGA
GAGAGAGGCTTTCCGGAACCAGGAACGGTCTGAGGAGCGGTCCAGGAGGC
ATGCCTCCTCGAGCGGCCATTACGGCAGCAGCAGTGGCGACTACAGCAGC
GGCGGCGGCGGCGGTGGCGGCCATAGCAACAGGGGATGGGAATGGGAATG
GGAATGGTTGCAAGGGTAG
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