mRNA_Ecto-sp13_S_contig617.16869.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig617.16869.1
Unique NamemRNA_Ecto-sp13_S_contig617.16869.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig617.16869.1 vs. uniprot
Match: A0A6H5KBW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.090e-41
Identity = 68/77 (88.31%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    4 RFQLNEEHVTPARPWNRPPDGXXXXXXXRNLVTVSLGDSGELDGYVVASTTCAPNGTPTVETVEVRQLTDRGLTHVQ 234
            RFQLNEEH+TPARPWNR PDG       RNLVTVSLGDSGELDGYVVASTTCAPNGTPTVETVEVRQLTDRGLTHVQ
Sbjct:    3 RFQLNEEHITPARPWNRQPDGGGSGGGGRNLVTVSLGDSGELDGYVVASTTCAPNGTPTVETVEVRQLTDRGLTHVQ 79
[Close]
BLAST of mRNA_Ecto-sp13_S_contig617.16869.1 vs. uniprot
Match: D8LID1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID1_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.400e-34
Identity = 70/106 (66.04%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    4 RFQLNEEHVTPARPWNRPPDGXXXXXXXRNLVTVSLGDSGELDGYVVASTTCAPNGTPTVETVEVRQLTDRGLTHVQQISVKNLLTGGQSAVMRTWARVPMTGEDH 321
            RF+L+EE VTPARPWNRP  G XXXXXX N VTVSLG+S +LDGYVVA+TT APNG PTVETVEVRQLTD GLTH+Q                R W RVPMT ED 
Sbjct:   45 RFELDEEQVTPARPWNRPQHGGXXXXXXVNQVTVSLGESEQLDGYVVATTTSAPNGRPTVETVEVRQLTDGGLTHIQXXXXXXXXXXXXXXXXRVWVRVPMTHEDQ 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig617.16869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBW6_9PHAE3.090e-4188.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LID1_ECTSI3.400e-3466.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig617contigEcto-sp13_S_contig617:14130..15143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size342
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_004100.1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463859.3521092-CDS-Ecto-sp13_S_contig617:14129..143631681463859.3521092-CDS-Ecto-sp13_S_contig617:14129..14363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig617 14130..14363 +
1681463859.3657932-CDS-Ecto-sp13_S_contig617:15035..151431681463859.3657932-CDS-Ecto-sp13_S_contig617:15035..15143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig617 15036..15143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig617.16869.1prot_Ecto-sp13_S_contig617.16869.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig617 14130..15143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig617.16869.1

>prot_Ecto-sp13_S_contig617.16869.1 ID=prot_Ecto-sp13_S_contig617.16869.1|Name=mRNA_Ecto-sp13_S_contig617.16869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
FRFQLNEEHVTPARPWNRPPDGGGGGGGGRNLVTVSLGDSGELDGYVVAS
TTCAPNGTPTVETVEVRQLTDRGLTHVQQISVKNLLTGGQSAVMRTWARV
PMTGEDHLRLLAA*
back to top

mRNA from alignment at Ecto-sp13_S_contig617:14130..15143+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig617.16869.1 ID=mRNA_Ecto-sp13_S_contig617.16869.1|Name=mRNA_Ecto-sp13_S_contig617.16869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1014bp|location=Sequence derived from alignment at Ecto-sp13_S_contig617:14130..15143+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCAGGTTCCAGCTCAATGAAGAGCACGTCACCCCTGCCAGACCCTGGAA
CCGTCCACCAGATGGTGGTGGTGGTGGAGGCGGTGGGAGGAACCTGGTGA
CGGTATCGCTAGGGGACAGTGGAGAACTAGACGGGTACGTCGTGGCCTCC
ACCACGTGCGCACCCAACGGCACACCGACTGTGGAGACGGTGGAGGTTCG
CCAGCTGACCGACCGGGGACTCACTCACGTACAGGTATGAGCAGGCACAA
AGTGAGCAAATAGAAAAGACGACGAGGGCCGTGTTCTTGACGGATTGGGA
TGTAAAATAACAGGTCGTTTGAGGGCTTGCCGAACAACCTCCCCGTACGA
GCTAGTGAAAGACGGAGGGAGTTCACGAAATATCCTCCGAAGTAGACGAA
TACAGTGAAAACAGATGAATTCCATCGTGTCCAACCTACTCCTAATCGCA
GACATTTTTGGCAAATAAAAAGAACGTTATAGGCGGTGATCGTTCTAAGT
TGTGCAGCTCACAACTCAGCCTCTACAGGCCCGAGAAATAGAAATGGTTG
TGCCAAATGTTTCGAGATACGCATGGCCGGGTATTGATGAGTGCTCGGTT
GCATCCACTTATCAAGATTGACCTTTCTAAAGGTAGGCACAGCATTTCTT
TGTTCCGGTTGCTGCCAGTGCCGGCAAAAAGCGGCACATTAAAGGTTGAC
TACGCTTGCTATTGGACATCGTTCTGCCCATCTGTTTTTTTTTCCATTTT
GATACTACAACGTTCGGGCTGGCGGGTCGCCGGGGGTGTGGAGTAAGTAG
TGAATCTTACGACCTTGCTTGATTTACGGTAGGTTGTCGAACATCCCATA
ATCTGTAGCACGTACGTTTATGCTTGTCGCACTCTTGTTATTGTTGGTTT
CCACAGCAAATCTCCGTCAAAAACTTGCTGACCGGTGGGCAGAGCGCCGT
CATGCGTACCTGGGCTCGTGTGCCGATGACCGGGGAGGACCACCTTCGGT
TGCTTGCTGCTTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig617:14130..15143+

>mRNA_Ecto-sp13_S_contig617.16869.1 ID=mRNA_Ecto-sp13_S_contig617.16869.1|Name=mRNA_Ecto-sp13_S_contig617.16869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig617:14130..15143+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCAGGTTCCAGCTCAATGAAGAGCACGTCACCCCTGCCAGACCCTGGAA
CCGTCCACCAGATGGTGGTGGTGGTGGAGGCGGTGGGAGGAACCTGGTGA
CGGTATCGCTAGGGGACAGTGGAGAACTAGACGGGTACGTCGTGGCCTCC
ACCACGTGCGCACCCAACGGCACACCGACTGTGGAGACGGTGGAGGTTCG
CCAGCTGACCGACCGGGGACTCACTCACGTACAGCAAATCTCCGTCAAAA
ACTTGCTGACCGGTGGGCAGAGCGCCGTCATGCGTACCTGGGCTCGTGTG
CCGATGACCGGGGAGGACCACCTTCGGTTGCTTGCTGCTTAA
back to top