mRNA_Ecto-sp13_S_contig617.16868.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig617.16868.1
Unique NamemRNA_Ecto-sp13_S_contig617.16868.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig617.16868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig617contigEcto-sp13_S_contig617:9501..9870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size183
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_004110.1
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463859.308603-CDS-Ecto-sp13_S_contig617:9500..95561681463859.308603-CDS-Ecto-sp13_S_contig617:9500..9556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig617 9501..9556 -
1681463859.3206735-CDS-Ecto-sp13_S_contig617:9743..98701681463859.3206735-CDS-Ecto-sp13_S_contig617:9743..9870Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig617 9744..9870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig617.16868.1prot_Ecto-sp13_S_contig617.16868.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig617 9501..9870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig617.16868.1

>prot_Ecto-sp13_S_contig617.16868.1 ID=prot_Ecto-sp13_S_contig617.16868.1|Name=mRNA_Ecto-sp13_S_contig617.16868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
MDPKIQAWALKVRFSWNELLRGTPGIRHAYQLPSPKNEASNSSRTVILHN
WACDKMALVT*
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mRNA from alignment at Ecto-sp13_S_contig617:9501..9870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig617.16868.1 ID=mRNA_Ecto-sp13_S_contig617.16868.1|Name=mRNA_Ecto-sp13_S_contig617.16868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=370bp|location=Sequence derived from alignment at Ecto-sp13_S_contig617:9501..9870- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCCCAAGATCCAAGCGTGGGCGCTGAAAGTACGTTTCAGTTGGAA
TGAGTTGTTGAGAGGCACCCCGGGCATCCGCCATGCTTATCAGCTGCCAT
CACCCAAGAACGAAGCGAGCAATTCAAGTGAGTCAGTCATCCACGTGTAG
ACCCCTGCCATCGTGGTCGGGCGCGTCGAACACGACCTGCCCTAATCTCA
CCACAATTACCACAGTGCGTGCCACGTACGTAGCCTTCATCTTGGTGTGC
TCTAGTTAGGGAAGATTTCCATTGATACTCCCTGTGGTATGGAAATACGT
TGTGTGCCCTACAGGTAGAACTGTGATTCTCCATAACTGGGCGTGCGACA
AGATGGCACTTGTGACTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig617:9501..9870-

>mRNA_Ecto-sp13_S_contig617.16868.1 ID=mRNA_Ecto-sp13_S_contig617.16868.1|Name=mRNA_Ecto-sp13_S_contig617.16868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig617:9501..9870- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCCCAAGATCCAAGCGTGGGCGCTGAAAGTACGTTTCAGTTGGAA
TGAGTTGTTGAGAGGCACCCCGGGCATCCGCCATGCTTATCAGCTGCCAT
CACCCAAGAACGAAGCGAGCAATTCAAGTAGAACTGTGATTCTCCATAAC
TGGGCGTGCGACAAGATGGCACTTGTGACTTGA
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