mRNA_Ecto-sp13_S_contig617.16867.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig617.16867.1
Unique NamemRNA_Ecto-sp13_S_contig617.16867.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig617.16867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig617contigEcto-sp13_S_contig617:982..4322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size348
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_004130.1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463859.2403343-CDS-Ecto-sp13_S_contig617:981..11291681463859.2403343-CDS-Ecto-sp13_S_contig617:981..1129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig617 982..1129 -
1681463859.2524629-CDS-Ecto-sp13_S_contig617:1480..15821681463859.2524629-CDS-Ecto-sp13_S_contig617:1480..1582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig617 1481..1582 -
1681463859.273251-CDS-Ecto-sp13_S_contig617:4224..43221681463859.273251-CDS-Ecto-sp13_S_contig617:4224..4322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig617 4225..4322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig617.16867.1prot_Ecto-sp13_S_contig617.16867.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig617 982..4322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig617.16867.1

>prot_Ecto-sp13_S_contig617.16867.1 ID=prot_Ecto-sp13_S_contig617.16867.1|Name=mRNA_Ecto-sp13_S_contig617.16867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
RDALDYFRGRRERGRESESEGWRQTRTWATKERLRRSSLGRRVPSSCGRF
HGEEVRRPRQTGLCYSTKETRRSGGGGVEKEPLTTKILLFNTRVRFVRLV
YTIALIIIRRRARTD*
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mRNA from alignment at Ecto-sp13_S_contig617:982..4322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig617.16867.1 ID=mRNA_Ecto-sp13_S_contig617.16867.1|Name=mRNA_Ecto-sp13_S_contig617.16867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig617:982..4322- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGATGCGCTGGACTATTTCAGAGGGAGAAGAGAGCGAGGGAGAGAGAG
CGAGAGCGAAGGATGGCGCCAAACACGGACATGGGCGACGAAGGAGAGGT
GGGTCTTTTCGTTGAAACCCTTTGCGCGCGCTTGATGACCGCAGCACGGT
CGACTGCCGAGAGTATGGATCGCACAGCGAACGGCCGATTACGAACCTCG
CTTGCGCGCGGAGATGACTGCTGATGTGGATGGGTTGATACCGACACGGA
GTGTGCAAGGAAAAGCTTCGCCAGAAATCCTCATTGTTTAGTAATATCTT
GTCAGGGTTTCCCAAGAGGACTCGTACCAATGTGCAATACAATTGTTTTC
ACTTGGGACCTGACTGCCAGCATTCTTCAGACGAGGATGCCAAGACGAGG
ACGTAAACGAGCGACCGCGCCGGAAAATCCTTGAATACGAACTATTTTGG
CGAGAAGGCGAGATTATCATGAGAACGAGACGCCCCCAAGGCCACGAATT
ATCCCGGTTCGAAATGCACATGGAGTCATTCCAAACCGTGCGAGGGACAT
ACATACCGTTTCCGCTTCGTGAAACTTTCACTCTCGGGTGAAACGTTCCG
ATCGGTTCTGCGCGACTTGTTCGAAAATAGTCACTCGTCGGGCCTCGTAT
CTTCATGAGCAGCGCAAAGCGACAAAAAGAATGGGTCTGGATGCATGCAC
GAAGAAGGTGCTTCGAGTATTGGACATAGTACACGACAGCGACAAGCAAG
CATCACATGTTACTTTCTCCCTCTTTGCCTTGCTGATATTTTCACTTAAA
AGCAAACATGAACATATCCCAAAAGCTCTCGTCGTTCTCTTCGGTCATTT
GACTTTATGTGAGCTTCTTCAAGTATTATAACAACATGGCTGACCGCATC
AGAAGACCTGACTGAGCAGCCGTTCCGTAAATAAATGAAAACTTTTCAGT
CGAGTCTGTCTGTGGAGGAGCCTGGGTTCGTGCCGGTACGTACCTCTCAG
TGAAATTGTTGCAAGCTGTGTTCTTGTGGATGACCAATTGAGACTCGTCC
AGCGCGATAACGTTGCGACTCTGATGTTCCCGCTCTCCGACCGCCTACAA
GAGAATACAGTTAGAGGGTGGTATTGGTCCAAACGAAATCGAAACAAAAA
GTCGAGCACAACGAGCACCCAAAGCCAGTGACATGCTGTTTGCCTGATCA
ATGATCGATGGCCAAGCCGACCTCTCGGCAAGGTAGGGCCGCGTTTCGTA
TGCATTTCGTGCAGGATATGTCAACGATGAACATTCTCCATGCTGATGGT
CGACTTTGACTTTCCAACCTTTCTCAAACCTCTACAAGGAAGATCTCTGC
CCAAACGTTGAATTCCCCGACAATGAACGGTATCACACTGTAATGAAGGC
TCTGTGAAAACAACTTTTGACGAAAGTTGGGTTGTACAGCAGTGGAAGGA
CTTACTATGAGGAGGGCCAAGTTCCGCAGCTATTTCGACATCAATTGTTC
CAAACGTGAGTGACGTCGCTCACCACAGGGAGAGCAAGTAGGTACGCTCT
CGCAAAATGTACCGAGGCCTTTAAGCCGCAGTTTTACAACAGGCTTGAAC
GTAGGTTCAGTTTTGCTGACGCAGGATTTTCCAGAATGTGTGACCCGCGC
AACTAATAAGAAGCCTCGCCACACGATACAATGAATTCTGCTGGATATAC
ATATGTACAACAGTCAGCCTACAGTACGTTTCTCGCTTTTTCCGCCCCTC
TATGTTGTTGGTACATGTACGTTCTCTAGCTTCTCCCACCCCTCTCTAAT
GCACCGCTTGCCTGTGTTCGGATGATCTCTGGTGGAGCACCAAGGCACTG
GAGGTAGCTCTCGAACGCATCCGACCTGTATTGCCGAAATAAGATGCACA
CCAGCGAAACAAAATAGAGGGTCACCACAGTACAGTAAAAGTCCCAATAT
AGTGGCAAGTAGGGACAATGGCAAAGCATGCCACTTTTTCAGGGTAGAGC
CACTGTTCGATCTACCGGGTTCGTGCACATATTGAGAATGTGACAAGGGG
TTTGATGCCACTATGTCGGGCATTTCACTATTCGGGTGCCACTTTTACTG
AAAGCAGGAAGATAGGGTAGATCGGATCCCCCCCCCGTTTGCAAATGGGC
CGGGCGGCCAGATGTGATTCATACAGACATCATATAGATAGATGGATGAA
GATGGTAGATGGGCTGGAAGAGTGACGATATGTGCCACTCCAAATTTCTT
ATTTTTTCTGCCAGAGGCAAGAATAATTCATGTTTCTTTGCCGATCGATC
TGAGTACGTGCATGATTTTTTCGGGCGAAACAATTATCAAGTTTTGTCAA
AAGACTTATTTCGATTCGGACACGCCAAATGTAGCAAATGAACTCACTTA
ATATACTCCCTATAGAGAGGGTGGCATCAGGAAGTCTCGTTTTCGTCAGG
TTTACAGGACCCCTCCTGCCGCTCTGCCAGCGAGCCCCCGTTATCTTAGC
ATCTTAACCCTGGTGGTGGCTACTTTGTAGGTCGGCGTGCCGTTGATGGC
TGTGCTCAGGTGGCTCAAGCAACTCAAACACGCTGGCTTGTTCGCACTTG
AGGGCAAATGCTACCCAAACCTGCCCTCGCTGTTTACTCTGTCCTGTATG
TGGCATTGGAACCAGTTTCAGAATTCAATGCAAGCAAGGTTCCGTTCCAA
TCCCTTGTATGCCAGTTGCACTTCCTCCATCCCCGGTTAGGTTGCGGAGG
TCCTCCTTGGGAAGGCGAGTGCCATCTTCGTGTGGACGTTTCCATGGCGA
GGAAGTTCGCCGACCACGACAAACAGGCTTGTGCTATTCCACGTACGTGG
ATCCGATCCCTTTATACTCTGAGTATCATTCATGCAGCATGAACAAGGGT
CCGCGTCGCCCGGCAGGCCAGTTGGACTGCTATGTAAAAACTACACCTCC
AGCACCGCGCTCGCTCGCAAACCACACCACAAAATATCTGACCTGGACAA
GTCAAGCACCCAAGCTCCCGTGATGATGGTATATTCCGGAGAAAGCTCTT
CGTTCGCATTCGCCATGGCCGCCTTGTAAGGTCCTCGAAGGAGAAAAATG
GATTCCTCGTGTTGAACTGAAACCACGCAGCACGCACGCAACAACGCTCG
TAGTGCGGTCGTGGTTGTCGCTTTGCGTCTTTGTAACCCGCAGAAAGGAG
ACGAGACGTTCGGGGGGCGGCGGGGTAGAGAAGGAGCCATTGACGACGAA
GATCTTATTGTTTAATACCCGGGTAAGGTTTGTTCGTCTTGTATATACCA
TTGCGCTAATAATAATCCGGCGTCGGGCACGTACTGACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig617:982..4322-

>mRNA_Ecto-sp13_S_contig617.16867.1 ID=mRNA_Ecto-sp13_S_contig617.16867.1|Name=mRNA_Ecto-sp13_S_contig617.16867.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig617:982..4322- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGATGCGCTGGACTATTTCAGAGGGAGAAGAGAGCGAGGGAGAGAGAG
CGAGAGCGAAGGATGGCGCCAAACACGGACATGGGCGACGAAGGAGAGGT
TGCGGAGGTCCTCCTTGGGAAGGCGAGTGCCATCTTCGTGTGGACGTTTC
CATGGCGAGGAAGTTCGCCGACCACGACAAACAGGCTTGTGCTATTCCAC
AAAGGAGACGAGACGTTCGGGGGGCGGCGGGGTAGAGAAGGAGCCATTGA
CGACGAAGATCTTATTGTTTAATACCCGGGTAAGGTTTGTTCGTCTTGTA
TATACCATTGCGCTAATAATAATCCGGCGTCGGGCACGTACTGACTGA
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