mRNA_Ecto-sp13_S_contig6167.16865.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6167.16865.1
Unique NamemRNA_Ecto-sp13_S_contig6167.16865.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6167.16865.1 vs. uniprot
Match: D7G216_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G216_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 4.080e-28
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 ATGWAGVGISEMGGMEGADIVFYETATGDLTDAHSLVAGTPVVDECTQDWTLLSAEV 171
            ATGWAGVGISEMGGMEGADIVFYETATG+LTDA+SLVAGTPVVDECTQDWTLLSAEV
Sbjct:   62 ATGWAGVGISEMGGMEGADIVFYETATGNLTDAYSLVAGTPVVDECTQDWTLLSAEV 118
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BLAST of mRNA_Ecto-sp13_S_contig6167.16865.1 vs. uniprot
Match: D7FP38_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP38_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 9.800e-28
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 ATGWAGVGISEMGGMEGADIVFYETATGDLTDAHSLVAGTPVVDECTQDWTLLSAEV 171
            ATGWAGVGISEMGGMEGADIV+YETATG++TDAHSLVAGTPVVDECTQDWTLLSA+V
Sbjct:   74 ATGWAGVGISEMGGMEGADIVYYETATGNVTDAHSLVAGTPVVDECTQDWTLLSADV 130
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BLAST of mRNA_Ecto-sp13_S_contig6167.16865.1 vs. uniprot
Match: D7FP37_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP37_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.090e-25
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 ATGWAGVGISEMGGMEGADIVFYETATGDLTDAHSLVAGTPVVDECTQDWTLLSAE 168
            A+GWAGVGISEMGGMEGADIV+YE ATG++TDAHSLVAG PVVDECTQDWTLLSA+
Sbjct:   74 ASGWAGVGISEMGGMEGADIVYYEIATGNVTDAHSLVAGAPVVDECTQDWTLLSAD 129
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BLAST of mRNA_Ecto-sp13_S_contig6167.16865.1 vs. uniprot
Match: D8LD47_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD47_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.920e-24
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 ATGWAGVGISEMGGMEGADIVFYETATGDLTDAHSLVAGTPVVDECTQDWTLLSAE 168
            ATGWAG+G+SEMGGMEGADIV+YET TG++TDAH++VAGTPV DECTQDWTL+SAE
Sbjct:   73 ATGWAGLGVSEMGGMEGADIVYYETWTGNVTDAHAIVAGTPVTDECTQDWTLVSAE 128
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BLAST of mRNA_Ecto-sp13_S_contig6167.16865.1 vs. uniprot
Match: D7FSK3_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK3_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.070e-9
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 ATGWAGVGISEMGGMEGADIVFYETAT 81
            ATGWAGVGISEMGGMEGADIVFYETA+
Sbjct:   75 ATGWAGVGISEMGGMEGADIVFYETAS 101
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BLAST of mRNA_Ecto-sp13_S_contig6167.16865.1 vs. uniprot
Match: A0A1Z5JSD8_FISSO (DOMON domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSD8_FISSO)

HSP 1 Score: 56.6 bits (135), Expect = 6.740e-8
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 ATGWAGVGISEMGGMEGADIVFYETATGD-LTDAHSLVAGTPVVDECTQDWTLLSA 165
            ATGW G G+SE GGMEGAD++ +ETAT D L DAH      PV D+C  +W L  A
Sbjct:   81 ATGWVGFGLSENGGMEGADMMIFETATPDKLMDAHVKDERVPVPDKC-HNWHLEEA 135
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BLAST of mRNA_Ecto-sp13_S_contig6167.16865.1 vs. uniprot
Match: A0A1Z5KKV0_FISSO (DOMON domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKV0_FISSO)

HSP 1 Score: 54.7 bits (130), Expect = 3.230e-7
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    1 ATGWAGVGISEMGGMEGADIVFYETATGD-LTDAHSLVAGTPVVDECTQDWTL 156
            ATGW G G+SE GGM GAD+  +ETA  D + DAH L    P+ D C QDW L
Sbjct:   98 ATGWLGFGLSENGGMRGADLFLFETAQPDQVRDAHVLDELQPITD-CRQDWEL 149
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BLAST of mRNA_Ecto-sp13_S_contig6167.16865.1 vs. uniprot
Match: A0A6H5K5H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H3_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.170e-6
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 ATGWAGVGISEMGGMEGADIVFYET 75
            ATGWAG+G+SEMGGMEG DIV+YET
Sbjct:   73 ATGWAGLGVSEMGGMEGGDIVYYET 97
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BLAST of mRNA_Ecto-sp13_S_contig6167.16865.1 vs. uniprot
Match: A0A7S2UP52_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UP52_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.600e-5
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    1 ATGWAGVGISEMGGMEGADIVFYETATGDLTDAHSLVAGTPVVDECTQDWTLLSAE 168
            +TGW G GISE GGM GAD+V + +    LTDAH      P+ D+C Q+W L+ ++
Sbjct:   82 STGWVGFGISENGGMRGADVVLF-SGRETLTDAHITDTLYPLPDKC-QNWKLVYSQ 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6167.16865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G216_ECTSI4.080e-2896.49DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D7FP38_ECTSI9.800e-2892.98DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D7FP37_ECTSI1.090e-2587.50DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LD47_ECTSI1.920e-2482.14DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FSK3_ECTSI4.070e-996.30DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A1Z5JSD8_FISSO6.740e-855.36DOMON domain-containing protein n=2 Tax=Fistulifer... [more]
A0A1Z5KKV0_FISSO3.230e-754.72DOMON domain-containing protein n=1 Tax=Fistulifer... [more]
A0A6H5K5H3_9PHAE5.170e-684.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UP52_9STRA2.600e-546.43Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6167contigEcto-sp13_S_contig6167:6746..8125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score114.0
Seed ortholog evalue2.3e-23
Seed eggNOG ortholog2880.D7G216
Model size175
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.octopamine biosynthetic process
EggNOG OGsKOG3568@1,KOG3568@2759
Ec32 ortholog descriptionDOMON domain
Ec32 orthologEc-04_000270.1
Cds size171
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463859.1620438-CDS-Ecto-sp13_S_contig6167:6745..68231681463859.1620438-CDS-Ecto-sp13_S_contig6167:6745..6823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6167 6746..6823 +
1681463859.1762843-CDS-Ecto-sp13_S_contig6167:8030..81231681463859.1762843-CDS-Ecto-sp13_S_contig6167:8030..8123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6167 8031..8123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6167.16865.1prot_Ecto-sp13_S_contig6167.16865.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6167 6746..8123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6167.16865.1

>prot_Ecto-sp13_S_contig6167.16865.1 ID=prot_Ecto-sp13_S_contig6167.16865.1|Name=mRNA_Ecto-sp13_S_contig6167.16865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
ATGWAGVGISEMGGMEGADIVFYETATGDLTDAHSLVAGTPVVDECTQDW
TLLSAEV
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mRNA from alignment at Ecto-sp13_S_contig6167:6746..8125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6167.16865.1 ID=mRNA_Ecto-sp13_S_contig6167.16865.1|Name=mRNA_Ecto-sp13_S_contig6167.16865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6167:6746..8125+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACCGGCTGGGCGGGCGTGGGCATCTCTGAGATGGGGGGGATGGAGGG
CGCTGACATTGTGTTTTACGAGACAGCTGTGAGTGCTTGCTCGTGACAGA
GAAGAATGGACGGTCGTTGTCGGGGGATAGGGAGCGAATCGCAAGAACTG
CGCAAGAACCGCGGCATTGATCTGCGTGTGTTTTTCTCACCACTCCAAGC
ACGACAGAAAGAGCAGTCAGTCGTCTGGATTGTCTGCAAGATGCTCGTTC
GTGTGATCGAAAGTTGCGCACGTTCGAGCTTCAAACCGCGGTTTCTGTGC
AATAAGATGCACCGTGCCTGGTAGCTCTACCGCATGGCGGGACGATCTCG
ATCCGAAACACGCGAGTGAGCGAGTATGTACAACATCGCCCCCCCCCGCA
CACCCATTCTCTGTAACTACTTCGTGGTATATCAGTTTCAACTGAGCAAA
AGGCTGCTGTACAATATTTAGGTATTCCCATCAATACAACTCAGCAGTAG
ACGATGTTGCATGCATGAGCGATTTCATAGCACGAAACTGTACCGGTTTC
AGTATACTTGATCACAAACTCGACGTAACAAGTGATAGAAGAAGTAGTCA
CAACTCGAACAACAATAGACGCGATAGCAACACATCAGGAGGATTATGGA
GAACGTTTCTACTGACCGGTGCGGTAGACTCCGCAGCGGTTCATACAAGG
TTTCGCAGTATTAATGGAACGAGCCCGCTGCCCTCGTCCAGTTCTCAGGA
ACGTCCGCGGGAAAATTCCATCACAAGATTTGAATGGTTCACGAAACGTT
TCCGGAACTGTTTTTTGTCTTGGAAAGGTATTTGGTTCCCGGGAAAGTTA
CAGAACGTATTCTCAACTACCACAAAGTCGTATCAGACCCAAAGCCACTG
ATGTCTTTTTGTTGTTACGCGCACCCGAGCAATAAAGCAGCGCTTTCTGC
GGATTAAGATGCAACGTGATCGATAGCTCTACCGCGTGGCAGACCGATCT
CGACCCGAAGCACACGGCGAGTGAGCATGCATACTCTGCGCAACATCCCA
CGCCCCCGGTCCCGCAGGATAGATAGGTCGGGACGCTTTAGAGCCACCTT
TGGCAAAGAAGGAAGGGATGATCGGCCATCAGTGATCGGTCCTGTGGCAA
CAATGCTCCGTCCTCTCAAGCAAGCGTGGCCAACGGCCCAACAGCTAATG
TAAGGCATCCAAACCGTGAGGAAGGCATCCAAGCCATGAGTACCCCCCCC
CCCCCCCCCCCCATTTTCCACGCGCGCGCGGCAAGACCGGGGACTTGACG
GACGCCCACTCCCTCGTGGCGGGCACGCCTGTCGTCGACGAGTGCACGCA
AGACTGGACCTTGCTGTCGGCGGAGGTAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6167:6746..8125+

>mRNA_Ecto-sp13_S_contig6167.16865.1 ID=mRNA_Ecto-sp13_S_contig6167.16865.1|Name=mRNA_Ecto-sp13_S_contig6167.16865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6167:6746..8125+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACCGGCTGGGCGGGCGTGGGCATCTCTGAGATGGGGGGGATGGAGGG
CGCTGACATTGTGTTTTACGAGACAGCTACCGGGGACTTGACGGACGCCC
ACTCCCTCGTGGCGGGCACGCCTGTCGTCGACGAGTGCACGCAAGACTGG
ACCTTGCTGTCGGCGGAGGTA
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