prot_Ecto-sp13_S_contig61648.16863.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig61648.16863.1
Unique Nameprot_Ecto-sp13_S_contig61648.16863.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length52
Homology
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: D7G6W1_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.630e-23
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0
Query:    1 MFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDVKN 51
            MFEVLETSWGTLQ SLDSALTLDDIIQAHKAYM+GILARAMLNEESTDVKN
Sbjct:  724 MFEVLETSWGTLQKSLDSALTLDDIIQAHKAYMKGILARAMLNEESTDVKN 774          
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: A0A7S2MB43_9STRA (Spindle pole body component n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MB43_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.910e-8
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    1 MFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDV 49
            MFEVLE SW TLQ  L++A  LD++I AH  Y+E I+ +A+L+E++ +V
Sbjct:  492 MFEVLEESWTTLQKQLNAAENLDEVIGAHNEYLEAIIQKALLDEDTKEV 540          
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: UPI000C781862 (gamma-tubulin complex component 3 homolog n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C781862)

HSP 1 Score: 54.7 bits (130), Expect = 2.600e-7
Identity = 21/50 (42.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    2 FEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDVKN 51
            FEV+E  W TL   +D+A TL+D+IQAH+ ++  I++RA+L+  + +++N
Sbjct:  444 FEVMECGWDTLVKQIDTAETLEDVIQAHEEFLSTIISRALLDHRTIEIRN 493          
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: T1JNK7_STRMM (Gamma-tubulin complex component n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JNK7_STRMM)

HSP 1 Score: 52.8 bits (125), Expect = 1.250e-6
Identity = 23/48 (47.92%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    2 FEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDV 49
            FEV+E SW  L+  + SA  LD+II AH+ ++E I+ARA+L++ES ++
Sbjct:  678 FEVMECSWDVLERKVKSAEDLDEIIAAHEEFLETIMARALLDDESKEL 725          
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: UPI000BA7F955 (gamma-tubulin complex component 3 homolog isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7F955)

HSP 1 Score: 52.8 bits (125), Expect = 1.250e-6
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 0
Query:    2 FEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDV 49
            FEV+E SW  LQ  + SA  LD +I AH+A+++ I+ RA+L+E+S DV
Sbjct:  760 FEVMECSWAELQQKVVSADDLDQLIAAHEAFLDCIITRALLDEQSKDV 807          
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: UPI0006B0BEDF (gamma-tubulin complex component 3 homolog n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0BEDF)

HSP 1 Score: 52.8 bits (125), Expect = 1.250e-6
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 0
Query:    2 FEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDV 49
            FEV+E SW  LQ  + SA  LD +I AH+ +++ I+ R++L+EES DV
Sbjct:  769 FEVMECSWAELQQKVMSAEDLDQVIAAHEEFLDSIMTRSLLDEESKDV 816          
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: A0A5B7JT24_PORTR (Gamma-tubulin complex component n=2 Tax=Heterotremata TaxID=116706 RepID=A0A5B7JT24_PORTR)

HSP 1 Score: 50.1 bits (118), Expect = 4.980e-6
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    2 FEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDVK 50
            FEVLE +W  L N L +A +LDD+I AH  +++ I+A A+L+ ES +V+
Sbjct:   68 FEVLECAWHDLMNLLKTAQSLDDVIAAHNHFLKRIVAGALLDAESKEVR 116          
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: A0A7S3H0B4_9STRA (Spindle pole body component n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H0B4_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.510e-6
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    1 MFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAML 42
            MFEVLETSW  LQ ++  A  +DD+I AH AY+  +L RA+L
Sbjct:   14 MFEVLETSWVKLQETIGRARCVDDVITAHDAYLSEVLDRALL 55          
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: A0A1J3G054_NOCCA (Gamma-tubulin complex component n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G054_NOCCA)

HSP 1 Score: 50.8 bits (120), Expect = 5.960e-6
Identity = 19/50 (38.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:    1 MFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDVK 50
            MFEVLE SW      +++A  LDD++ AH+ Y+  I+ +++L E+S  ++
Sbjct:  371 MFEVLEVSWSNFSKEMEAAKDLDDLLAAHEKYLNAIVGKSLLGEQSQTIR 420          
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: A0A0R3WLP9_HYDTA (Gamma-tubulin complex component n=2 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WLP9_HYDTA)

HSP 1 Score: 50.8 bits (120), Expect = 5.980e-6
Identity = 20/49 (40.82%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    2 FEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDVK 50
            FE LE +W  L   L+SA  LD++I+AHKA++  +++R +L++ S D++
Sbjct:  551 FEALECAWVALGTKLNSANDLDEVIEAHKAFLSNVISRCLLDQNSRDLR 599          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W1_ECTSI3.630e-2396.08Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
A0A7S2MB43_9STRA2.910e-851.02Spindle pole body component n=2 Tax=Dictyocha spec... [more]
UPI000C7818622.600e-742.00gamma-tubulin complex component 3 homolog n=1 Tax=... [more]
T1JNK7_STRMM1.250e-647.92Gamma-tubulin complex component n=1 Tax=Strigamia ... [more]
UPI000BA7F9551.250e-650.00gamma-tubulin complex component 3 homolog isoform ... [more]
UPI0006B0BEDF1.250e-647.92gamma-tubulin complex component 3 homolog n=1 Tax=... [more]
A0A5B7JT24_PORTR4.980e-646.94Gamma-tubulin complex component n=2 Tax=Heterotrem... [more]
A0A7S3H0B4_9STRA5.510e-654.76Spindle pole body component n=1 Tax=Spumella elong... [more]
A0A1J3G054_NOCCA5.960e-638.00Gamma-tubulin complex component n=1 Tax=Noccaea ca... [more]
A0A0R3WLP9_HYDTA5.980e-640.82Gamma-tubulin complex component n=2 Tax=Hydatigena... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042241Gamma-tubulin complex, C-terminal domain superfamilyGENE3D1.20.120.1900coord: 1..50
e-value: 1.6E-10
score: 42.7
IPR040457Gamma tubulin complex component, C-terminalPFAMPF04130GCP_C_terminalcoord: 1..45
e-value: 3.1E-9
score: 36.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61648contigEcto-sp13_S_contig61648:436..591 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61648.16863.1mRNA_Ecto-sp13_S_contig61648.16863.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig61648 427..591 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig61648.16863.1 ID=prot_Ecto-sp13_S_contig61648.16863.1|Name=mRNA_Ecto-sp13_S_contig61648.16863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
MFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDVK
N*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042241GCP_C_sf
IPR040457GCP_C