mRNA_Ecto-sp13_S_contig61648.16863.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61648.16863.1
Unique NamemRNA_Ecto-sp13_S_contig61648.16863.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: D7G6W1_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 5.300e-25
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    1 NYVMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDVKN 162
            NY+MFEVLETSWGTLQ SLDSALTLDDIIQAHKAYM+GILARAMLNEESTDVKN
Sbjct:  721 NYMMFEVLETSWGTLQKSLDSALTLDDIIQAHKAYMKGILARAMLNEESTDVKN 774
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BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: A0A7S2MB43_9STRA (Spindle pole body component n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MB43_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.150e-10
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 NYVMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDV 156
            NY+MFEVLE SW TLQ  L++A  LD++I AH  Y+E I+ +A+L+E++ +V
Sbjct:  489 NYMMFEVLEESWTTLQKQLNAAENLDEVIGAHNEYLEAIIQKALLDEDTKEV 540
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BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: UPI000C781862 (gamma-tubulin complex component 3 homolog n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C781862)

HSP 1 Score: 58.2 bits (139), Expect = 1.770e-8
Identity = 22/53 (41.51%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 YVMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDVKN 162
            Y+ FEV+E  W TL   +D+A TL+D+IQAH+ ++  I++RA+L+  + +++N
Sbjct:  441 YITFEVMECGWDTLVKQIDTAETLEDVIQAHEEFLSTIISRALLDHRTIEIRN 493
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BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: A0A6G0WYN0_9STRA (Spindle pole body component n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYN0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.780e-8
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 NYVMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEES 147
            NY+MFEVLETSW TL   L+ A  LD +I+AH AY++ I A A + +E+
Sbjct:  636 NYMMFEVLETSWHTLVKELNQATNLDGLIEAHAAYLQRIKANAFITDEN 684
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BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: A0A1W0A3C8_9STRA (Gamma-tubulin complex component n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3C8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.240e-8
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 NYVMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEES 147
            NY+MFEVLETSW TL  S+ SA  LD++I++H AY+  I   A L +ES
Sbjct:  913 NYMMFEVLETSWHTLIKSIRSATDLDELIESHNAYLYTIKKNAFLMDES 961
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BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: T1JNK7_STRMM (Gamma-tubulin complex component n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JNK7_STRMM)

HSP 1 Score: 56.2 bits (134), Expect = 8.500e-8
Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    4 YVMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDV 156
            Y+ FEV+E SW  L+  + SA  LD+II AH+ ++E I+ARA+L++ES ++
Sbjct:  675 YITFEVMECSWDVLERKVKSAEDLDEIIAAHEEFLETIMARALLDDESKEL 725
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BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: UPI000BA7F955 (gamma-tubulin complex component 3 homolog isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7F955)

HSP 1 Score: 56.2 bits (134), Expect = 8.510e-8
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 YVMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDV 156
            Y+ FEV+E SW  LQ  + SA  LD +I AH+A+++ I+ RA+L+E+S DV
Sbjct:  757 YITFEVMECSWAELQQKVVSADDLDQLIAAHEAFLDCIITRALLDEQSKDV 807
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BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: UPI0006B0BEDF (gamma-tubulin complex component 3 homolog n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0BEDF)

HSP 1 Score: 56.2 bits (134), Expect = 8.510e-8
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 YVMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDV 156
            Y+ FEV+E SW  LQ  + SA  LD +I AH+ +++ I+ R++L+EES DV
Sbjct:  766 YIAFEVMECSWAELQQKVMSAEDLDQVIAAHEEFLDSIMTRSLLDEESKDV 816
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BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: A0A8K1FH84_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FH84_PYTOL)

HSP 1 Score: 55.5 bits (132), Expect = 1.590e-7
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 NYVMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDVKN 162
            NYVMFEVLETSW  L   L +A  LD++I +H+ Y+  I  +  +NE + D+ N
Sbjct:  773 NYVMFEVLETSWHKLVKDLKAAKDLDELISSHEDYLSTIREKGFMNESTRDLLN 826
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BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Match: A0A7S3V0N3_9STRA (Spindle pole body component n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V0N3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.070e-7
Identity = 23/45 (51.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 NYVMFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAML 135
            NY+MFEVLETSW  L ++L+SA  LD+I++AH  Y++ I+ +++L
Sbjct:  134 NYIMFEVLETSWERLVSTLNSAGDLDEIVKAHDEYLDNIIQKSLL 178
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61648.16863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6W1_ECTSI5.300e-2594.44Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
A0A7S2MB43_9STRA4.150e-1051.92Spindle pole body component n=2 Tax=Dictyocha spec... [more]
UPI000C7818621.770e-841.51gamma-tubulin complex component 3 homolog n=1 Tax=... [more]
A0A6G0WYN0_9STRA1.780e-853.06Spindle pole body component n=1 Tax=Aphanomyces eu... [more]
A0A1W0A3C8_9STRA6.240e-855.10Gamma-tubulin complex component n=1 Tax=Thraustoth... [more]
T1JNK7_STRMM8.500e-847.06Gamma-tubulin complex component n=1 Tax=Strigamia ... [more]
UPI000BA7F9558.510e-849.02gamma-tubulin complex component 3 homolog isoform ... [more]
UPI0006B0BEDF8.510e-847.06gamma-tubulin complex component 3 homolog n=1 Tax=... [more]
A0A8K1FH84_PYTOL1.590e-746.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3V0N3_9STRA2.070e-751.11Spindle pole body component n=1 Tax=Aplanochytrium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61648contigEcto-sp13_S_contig61648:427..591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score99.4
Seed ortholog evalue5.4e-19
Seed eggNOG ortholog2880.D7G6W1
Preferred nameTUBGCP3
Model size165
KEGG koko:K16570
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000922,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005824,GO:0005825,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007140,GO:0007163,GO:0007276,GO:0007338,GO:0008017,GO:0008092,GO:0008150,GO:0008275,GO:0008360,GO:0009566,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030863,GO:0030981,GO:0031023,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032501,GO:0032504,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0044703,GO:0044732,GO:0046785,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0061496,GO:0061497,GO:0065003,GO:0065007,GO:0065008,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0071957,GO:0071963,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903046,GO:1903047
Exons1
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2000@1,KOG2000@2759
Cds size156
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463858.9952056-UTR-Ecto-sp13_S_contig61648:426..4351681463858.9952056-UTR-Ecto-sp13_S_contig61648:426..435Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig61648 427..435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463859.0059586-CDS-Ecto-sp13_S_contig61648:435..5911681463859.0059586-CDS-Ecto-sp13_S_contig61648:435..591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61648 436..591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61648.16863.1prot_Ecto-sp13_S_contig61648.16863.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61648 436..591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61648.16863.1

>prot_Ecto-sp13_S_contig61648.16863.1 ID=prot_Ecto-sp13_S_contig61648.16863.1|Name=mRNA_Ecto-sp13_S_contig61648.16863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
MFEVLETSWGTLQNSLDSALTLDDIIQAHKAYMEGILARAMLNEESTDVK
N*
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mRNA from alignment at Ecto-sp13_S_contig61648:427..591+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61648.16863.1 ID=mRNA_Ecto-sp13_S_contig61648.16863.1|Name=mRNA_Ecto-sp13_S_contig61648.16863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61648:427..591+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACTACGTGATGTTCGAGGTGCTGGAGACTTCGTGGGGCACTCTGCAGAA
CAGCCTCGACTCCGCCCTCACCCTGGACGACATAATCCAAGCGCACAAGG
CCTACATGGAGGGCATCCTTGCCAGGGCTATGCTGAACGAAGAGAGCACG
GACGTGAAGAACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61648:427..591+

>mRNA_Ecto-sp13_S_contig61648.16863.1 ID=mRNA_Ecto-sp13_S_contig61648.16863.1|Name=mRNA_Ecto-sp13_S_contig61648.16863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61648:427..591+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGAGGTGCTGGAGACTTCGTGGGGCACTCTGCAGAACAGCCTCGA
CTCCGCCCTCACCCTGGACGACATAATCCAAGCGCACAAGGCCTACATGG
AGGGCATCCTTGCCAGGGCTATGCTGAACGAAGAGAGCACGGACGTGAAG
AACTAG
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