mRNA_Ecto-sp13_S_contig6162.16859.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6162.16859.1
Unique NamemRNA_Ecto-sp13_S_contig6162.16859.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6162.16859.1 vs. uniprot
Match: A0A6H5JDY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY6_9PHAE)

HSP 1 Score: 355 bits (911), Expect = 1.910e-120
Identity = 176/208 (84.62%), Postives = 185/208 (88.94%), Query Frame = 1 
Query:   79 MEERKRRAAGANLQIAGCQIPGFQSPGCPSDEDELLYADEEDAGPDTLANAIFSRLFCVAFDRCVYPPAWIYEDELDSMLGAQPPLSDHNPPGESRARSTSGDNDSGEAAAEDTKPLYDVILEDDNDDNTKTVAMRPGNPWRALMVAPPPSPLAQSPRRRWSDDHAARVASTALMGDLDEWPLTAQAPPSDPHRRRSEPENRRSAVVI 702
            M ER+RR AGANLQIAGCQIPGFQSP CP DEDELL+ADEEDAGPDT ANAIFSRLFCVAFDRCV+PPAWIYEDELDS  GA PPLSDHNPPGES  RSTS D + GEAAAEDTKPLYDVILEDDNDDNTKT+AMRPGNPWR  MVAPPPSPLAQSPRR+ SDDHAAR AS+ALMGDLDEWPLT QAPPSDPHRRR EP +R  AV +
Sbjct:    1 MVERERRTAGANLQIAGCQIPGFQSPCCPCDEDELLHADEEDAGPDTRANAIFSRLFCVAFDRCVFPPAWIYEDELDSKPGAPPPLSDHNPPGESHTRSTSDDKNGGEAAAEDTKPLYDVILEDDNDDNTKTMAMRPGNPWRP-MVAPPPSPLAQSPRRQRSDDHAARDASSALMGDLDEWPLTVQAPPSDPHRRRPEPHDRLLAVAM 207
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BLAST of mRNA_Ecto-sp13_S_contig6162.16859.1 vs. uniprot
Match: D8LCL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL0_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 2.350e-55
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:   79 MEERKRRAAGANLQIAGCQIPGFQSPGCPSDEDELLYADEEDAGPDTLANAIFSRLFCVAFDRCVYPPAWIYEDELDSMLGAQPPLSDHNPP 354
            M ER+RRAAGANLQIAGCQIPGFQSPGCPSDEDELLYADEEDAGPDTLANAIFSRLFCVAFDRCVYPPAWIYEDELDS  GA PPLSDHNPP
Sbjct:    1 MVERQRRAAGANLQIAGCQIPGFQSPGCPSDEDELLYADEEDAGPDTLANAIFSRLFCVAFDRCVYPPAWIYEDELDSTPGALPPLSDHNPP 92
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BLAST of mRNA_Ecto-sp13_S_contig6162.16859.1 vs. uniprot
Match: A0A6H5JZ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ42_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.310e-18
Identity = 87/236 (36.86%), Postives = 106/236 (44.92%), Query Frame = 1 
Query:  184 LYADEEDAGPDTLANAIFSRLFCVAFDR-CVYPPAWIYEDELDSMLGAQPPLSDHNPPGESRARSTSGDNDSGEAAAEDTKPLYDVILEDDNDDNTKTVAMRPGNPWRALMVAPPPS-----------PLAQSPRRRWSDDHAARVASTALMGDLDEWPLTAQAPPSDPHRRRSEPENRRSAVVICSSRSDXXXXXXXXXXXXXXXXXXEDPKIMRGAPWQGDDYLPGDMAGGVGG 855
            + A + DA  DT  NA+  RL    F+R  V P A I+    D+   A   + D        A    G +DS   A E  K  +DV L D   D+TK  A R GN    L V PP             P + SP RR SD    RVAST LMGDL   PLT QAPP++ HR+R E    +  VV      D                  EDP +MR  PW+ DD+L GD+ GGV G
Sbjct:    1 MLAGQVDADADTAGNAVKRRLVFGDFNRKIVDPSARIHVGGPDATAAAAVLVRDLELSDAGPAPKKLGTSDSELRAVEGAKSWWDVDLGDGGGDSTKKGA-RGGN-LSPLTVTPPXXXXXXXXXXLSLPPSLSPVRRMSDAGVVRVASTTLMGDLKLSPLTVQAPPNNRHRQRCELYAAKRPVVEVH---DSSIVSPAGSSSSSNKIGGEDPNVMRQPPWREDDWLAGDLLGGVRG 231
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6162.16859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDY6_9PHAE1.910e-12084.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCL0_ECTSI2.350e-5594.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ42_9PHAE1.310e-1836.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6162contigEcto-sp13_S_contig6162:6307..7877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1089
Hectar predicted targeting categoryother localisation
Exons2
Cds size786
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463858.6413648-UTR-Ecto-sp13_S_contig6162:6306..63841681463858.6413648-UTR-Ecto-sp13_S_contig6162:6306..6384Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6162 6307..6384 +
1681463858.672821-UTR-Ecto-sp13_S_contig6162:7652..78771681463858.672821-UTR-Ecto-sp13_S_contig6162:7652..7877Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6162 7653..7877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463858.6521337-CDS-Ecto-sp13_S_contig6162:6384..65721681463858.6521337-CDS-Ecto-sp13_S_contig6162:6384..6572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6162 6385..6572 +
1681463858.6624064-CDS-Ecto-sp13_S_contig6162:7054..76521681463858.6624064-CDS-Ecto-sp13_S_contig6162:7054..7652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6162 7055..7652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6162.16859.1prot_Ecto-sp13_S_contig6162.16859.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6162 6385..7652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6162.16859.1

>prot_Ecto-sp13_S_contig6162.16859.1 ID=prot_Ecto-sp13_S_contig6162.16859.1|Name=mRNA_Ecto-sp13_S_contig6162.16859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=262bp
MEERKRRAAGANLQIAGCQIPGFQSPGCPSDEDELLYADEEDAGPDTLAN
AIFSRLFCVAFDRCVYPPAWIYEDELDSMLGAQPPLSDHNPPGESRARST
SGDNDSGEAAAEDTKPLYDVILEDDNDDNTKTVAMRPGNPWRALMVAPPP
SPLAQSPRRRWSDDHAARVASTALMGDLDEWPLTAQAPPSDPHRRRSEPE
NRRSAVVICSSRSDRGSRSSRSSSSSSNGSNGEDPKIMRGAPWQGDDYLP
GDMAGGVGGTD*
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mRNA from alignment at Ecto-sp13_S_contig6162:6307..7877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6162.16859.1 ID=mRNA_Ecto-sp13_S_contig6162.16859.1|Name=mRNA_Ecto-sp13_S_contig6162.16859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1571bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6162:6307..7877+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCGCTTGCTTTAGCTGCCTACGACGTGAAGACTCGTCGTCGTGCCGTG
GATATCCCACGTGAAGCAGTCTGCAGTCATGGAAGAGAGGAAAAGGAGGG
CGGCCGGTGCGAACCTACAGATCGCTGGCTGCCAAATCCCTGGCTTCCAG
AGCCCTGGCTGCCCAAGCGATGAAGACGAGCTCTTGTACGCTGATGAGGA
GGATGCCGGGCCTGATACTCTAGCCAACGCCATCTTCAGCCGCCTGTTTT
GCGTCGCGTTTGACAGGTGTGTTTGACATTTGCAAATCGAGACAGACAGG
AAACATATGGATATGCTTACGCACGCATTTGAGGCGACAGCTGCTGCTAA
TATGGTTCGGTTGTCCCCATCCGAGGCGCTTCCTAGCATGTCTCCGGGAA
GGGAGCTTTCAGAGAAGGGTGCTGAAGTGCCATTAGACATAATTGTTTAA
GTACATGCATTCTTGGACATGTCGGTGGACGTCGATGCACGCATGGATAC
GTCTCGGCAGGCGTATTCGTGAGCGTAATATGATCGTCTGTTGCTGTAGA
CGGATATATAACAATCAACACAGCCGCCGTGCATGTCTTTTCTTTCCAGA
GTATGGGATGCCAGTGTACTGTACGTCCATACAAAAAAGATAGGGTCCTC
GAACTGCCGCTGTTATGCAGCATTTGGGTTTATAAACAACGCACGCGAAT
GTCATCTCCTGAAGCAGATACCTTTCGTGTTTTCGAACACCGCGGCAGGT
GTGTTTATCCGCCGGCATGGATCTATGAAGACGAGCTAGACAGCATGCTT
GGGGCGCAACCGCCCCTTTCCGACCACAACCCGCCTGGTGAAAGTCGCGC
TCGAAGCACTAGCGGCGACAACGACAGCGGAGAAGCAGCAGCGGAGGACA
CCAAACCGTTGTACGACGTCATCCTCGAAGACGATAACGATGACAACACG
AAGACGGTGGCGATGAGGCCGGGCAACCCATGGCGCGCCCTCATGGTGGC
ACCACCACCATCACCTCTTGCTCAGTCTCCTCGTCGGCGATGGTCCGACG
ACCACGCCGCTCGCGTTGCCAGCACCGCGTTGATGGGGGACCTGGACGAA
TGGCCGCTCACGGCCCAGGCGCCGCCTAGCGACCCGCACCGTCGACGATC
TGAGCCGGAAAACAGGCGGTCGGCCGTCGTGATCTGTTCCAGTAGGAGCG
ACAGGGGCAGCAGAAGCAGCAGAAGCAGCAGCAGCAGCAGCAACGGTAGC
AACGGTGAGGATCCGAAGATAATGCGAGGGGCTCCTTGGCAGGGGGATGA
CTACCTGCCAGGGGACATGGCCGGTGGAGTCGGAGGAACAGATTGAACCC
GCACCGTTTCCTCCTTGGTCTTGATGGCCCAGCTCGCGGTTTGTGTGGTT
TAGCACTGCCACAGGTGGGCATGTGTGCTCTCTGCCTGCGTGTGGTTTTG
GATCGGGCGATTTACTGACAGCCCCGGGGTTGCTACGGAGAACTGTCGAC
ATGCATGCGGCAAAATTAGGTCCAGCTGGACACCGTCACGAAAGCGTGAG
GAGAAGGGAAGTAGCATAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6162:6307..7877+

>mRNA_Ecto-sp13_S_contig6162.16859.1 ID=mRNA_Ecto-sp13_S_contig6162.16859.1|Name=mRNA_Ecto-sp13_S_contig6162.16859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6162:6307..7877+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGAGAGGAAAAGGAGGGCGGCCGGTGCGAACCTACAGATCGCTGG
CTGCCAAATCCCTGGCTTCCAGAGCCCTGGCTGCCCAAGCGATGAAGACG
AGCTCTTGTACGCTGATGAGGAGGATGCCGGGCCTGATACTCTAGCCAAC
GCCATCTTCAGCCGCCTGTTTTGCGTCGCGTTTGACAGGTGTGTTTATCC
GCCGGCATGGATCTATGAAGACGAGCTAGACAGCATGCTTGGGGCGCAAC
CGCCCCTTTCCGACCACAACCCGCCTGGTGAAAGTCGCGCTCGAAGCACT
AGCGGCGACAACGACAGCGGAGAAGCAGCAGCGGAGGACACCAAACCGTT
GTACGACGTCATCCTCGAAGACGATAACGATGACAACACGAAGACGGTGG
CGATGAGGCCGGGCAACCCATGGCGCGCCCTCATGGTGGCACCACCACCA
TCACCTCTTGCTCAGTCTCCTCGTCGGCGATGGTCCGACGACCACGCCGC
TCGCGTTGCCAGCACCGCGTTGATGGGGGACCTGGACGAATGGCCGCTCA
CGGCCCAGGCGCCGCCTAGCGACCCGCACCGTCGACGATCTGAGCCGGAA
AACAGGCGGTCGGCCGTCGTGATCTGTTCCAGTAGGAGCGACAGGGGCAG
CAGAAGCAGCAGAAGCAGCAGCAGCAGCAGCAACGGTAGCAACGGTGAGG
ATCCGAAGATAATGCGAGGGGCTCCTTGGCAGGGGGATGACTACCTGCCA
GGGGACATGGCCGGTGGAGTCGGAGGAACAGATTGA
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