prot_Ecto-sp13_S_contig616.16856.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig616.16856.1
Unique Nameprot_Ecto-sp13_S_contig616.16856.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length304
Homology
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BLAST of mRNA_Ecto-sp13_S_contig616.16856.1 vs. uniprot
Match: D7FL35_ECTSI (Similar to Rho GTPase activating protein 24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL35_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 2.240e-77
Identity = 246/305 (80.66%), Postives = 248/305 (81.31%), Query Frame = 0 
Query:    1 LSRPRSSSSIPSPNQLAALEREVEICSARVARTAGYVRFSVAAKAGGSXXXXXXXXXXXXXXFAAVDEXXXXXXXXXXXXXXXXXXXGPDGGGSADATERAIDRDVEKTRATDSPXXXXXXXXXXXXXXXXXXXXXXXEVVACRKSGA-TGRAIDKNGSAPADHPARLRRATTDKTVATAKSAWEKAGEGNGAAAGGVKRRGAGKAAQHLSTSARISPGIQALMANYDAAASYSRPVTPGMKTPLSTTPAKPAGSAAPSKTAACGGGXXXXXXXTSAGAASPEDCESFPAAAAKDAATPTSAVPQ 304
            LSRP SSSSIPSPNQLAALEREVEICSARVARTAGYVRFSVAAKAGGSXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXX                            XXXXXXXXXXXXXXXXXXXXXX EVVA  KSGA TGRA DKNGSAPADHPA LRRA T KTVA AKSAWEKAGEG+ AAAGGVK RGAGK AQHLST ARISPGIQALMANYDAAA   RPVTPGMKTPLSTTPAKPAGSAAPSKTAACGG XXXXXX TSAGAASP+D E FPA AAKDAATPT AVPQ
Sbjct:  682 LSRPWSSSSIPSPNQLAALEREVEICSARVARTAGYVRFSVAAKAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVVAGGKSGAATGRATDKNGSAPADHPAPLRRAATGKTVAAAKSAWEKAGEGSAAAAGGVKSRGAGKVAQHLSTLARISPGIQALMANYDAAA---RPVTPGMKTPLSTTPAKPAGSAAPSKTAACGGXXXXXXXATSAGAASPDDREVFPAGAAKDAATPTPAVPQ 981
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BLAST of mRNA_Ecto-sp13_S_contig616.16856.1 vs. uniprot
Match: A0A6H5JEV0_9PHAE (Rho-GAP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV0_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 1.550e-64
Identity = 144/167 (86.23%), Postives = 147/167 (88.02%), Query Frame = 0 
Query:  139 EVVACRKSGA-TGRAIDKNGSAPADHPARLRRATTDKTVATAKSAWEKAGEGNGAAAGGVKRRGAGKAAQHLSTSARISPGIQALMANYDAAASYSRPVTPGMKTPLSTTPAKPAGSAAPSKTAACGGGXXXXXXXTSAGAASPEDCESFPAAAAKDAATPTSAVPQ 304
            EVVACRKSGA TGRA DKNG APADHPA LRRA+T K+VA  KSAWEKAGEGNGAAAGGVK RGAGKAAQHLSTSARISPGIQALMANYDAAASYSRPVTPG+KT LSTTPAKPAGSAAPSKT      XXXXXXX SAGAASPED E F A AAKDAATPTSAVPQ
Sbjct:  761 EVVACRKSGAATGRATDKNGPAPADHPAPLRRASTGKSVAAVKSAWEKAGEGNGAAAGGVKSRGAGKAAQHLSTSARISPGIQALMANYDAAASYSRPVTPGIKTTLSTTPAKPAGSAAPSKTXXXXXXXXXXXXXXSAGAASPEDREVFTAVAAKDAATPTSAVPQ 927
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig616.16856.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL35_ECTSI2.240e-7780.66Similar to Rho GTPase activating protein 24 n=1 Ta... [more]
A0A6H5JEV0_9PHAE1.550e-6486.23Rho-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig616contigEcto-sp13_S_contig616:18190..19101 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig616.16856.1mRNA_Ecto-sp13_S_contig616.16856.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig616 18190..19103 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig616.16856.1 ID=prot_Ecto-sp13_S_contig616.16856.1|Name=mRNA_Ecto-sp13_S_contig616.16856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
LSRPRSSSSIPSPNQLAALEREVEICSARVARTAGYVRFSVAAKAGGSGG
GSGSGSRSGSSVFAAVDEDEEEMDRPPSPPSSGSTGCGPDGGGSADATER
AIDRDVEKTRATDSPTPHNVNVNGSGSGSGNGSGSGNGEVVACRKSGATG
RAIDKNGSAPADHPARLRRATTDKTVATAKSAWEKAGEGNGAAAGGVKRR
GAGKAAQHLSTSARISPGIQALMANYDAAASYSRPVTPGMKTPLSTTPAK
PAGSAAPSKTAACGGGGSGGRGATSAGAASPEDCESFPAAAAKDAATPTS
AVPQ
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