prot_Ecto-sp13_S_contig6158.16853.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6158.16853.1
Unique Nameprot_Ecto-sp13_S_contig6158.16853.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length324
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6158.16853.1 vs. uniprot
Match: D8LT98_ECTSI (Conserved C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT98_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 6.320e-119
Identity = 190/231 (82.25%), Postives = 197/231 (85.28%), Query Frame = 0 
Query:    1 MVLDSTRYAIERSARVLRGMNFWGKIRNAFSDDPEVPQQPAGNTLAGTATGNGGKGNDDPDTPAEGFICPDCRGLFPTSDALVAHYGSAHTIAGADXXXXXXXXXXXXXATPYGTAEGGDGVARRVPGFRRAGGEGAGPPGPQHWGEPGRAGGHAGSGGGEVVGGERPHGVRHAQGRAAGAELEAQEPDLCHESGAAGGDDGPVPCGYRRGGGAAGQGAEERLPLRGVGET 231
            MVLDSTRYAIERSAR+LRGM FWGKIRNAFSDDP+VPQQPAG+T AGTATG+GG GNDDPDTPAEGFICPDCRGLFPTSD LVAHYGSAHTIA                       EGGDGVA R+PGFRRAGGEGAG P PQHWGEPGRAGGHAG GGGEVVGGERPHGVR AQGRA+GAELEAQEPDLCHE GAAGG DGPVPCG+RRGGGAAGQGAEERLPLRGVGET
Sbjct:  125 MVLDSTRYAIERSARILRGMTFWGKIRNAFSDDPQVPQQPAGSTRAGTATGDGGNGNDDPDTPAEGFICPDCRGLFPTSDVLVAHYGSAHTIA-----------------------EGGDGVAGRLPGFRRAGGEGAGHPKPQHWGEPGRAGGHAGPGGGEVVGGERPHGVRDAQGRASGAELEAQEPDLCHEPGAAGGVDGPVPCGHRRGGGAAGQGAEERLPLRGVGET 332
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BLAST of mRNA_Ecto-sp13_S_contig6158.16853.1 vs. uniprot
Match: A0A6H5JRH3_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH3_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 4.090e-50
Identity = 91/114 (79.82%), Postives = 93/114 (81.58%), Query Frame = 0 
Query:    1 MVLDSTRYAIERSARVLRGMNFWGKIRNAFSDDPEVPQQPAGNTLAGTATGNGGKGNDDPDTPAEGFICPDCRGLFPTSDALVAHYGSAHTIAGADXXXXXXXXXXXXXATPYG 114
            MVLDSTRYAIERSARVLRGM FWGKIRNAFS+DPEVPQQPAGNT AGTATGNGG GN DPD PAEGFICPDCRGLFPTSDALVAH+G AHTIA AD             AT YG
Sbjct:  125 MVLDSTRYAIERSARVLRGMTFWGKIRNAFSNDPEVPQQPAGNTRAGTATGNGGNGNYDPDVPAEGFICPDCRGLFPTSDALVAHHGLAHTIASADDDEDARGWGAGGGATQYG 238
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BLAST of mRNA_Ecto-sp13_S_contig6158.16853.1 vs. uniprot
Match: A0A835YH57_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH57_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.160e-12
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 0 
Query:    1 MVLDSTRYAIERSARVLRGMNFWGKIRNAFSDDPEVPQQPAGNTLAGTATGNGGKGNDDPDTPAEGFICPDCRGLFPTSDALVAHYGSAH 90
            MV+DST+Y +++SARV+RGM  WG+++N FSD+P  P   A   ++ + + + G          EG+ICP+CR    ++D L+AH+ S H
Sbjct:   60 MVVDSTQYLLDKSARVIRGMTMWGRMQNFFSDEP-APVLAASTPISNSTSSSAGM---------EGYICPECRMRCASADDLLAHFASLH 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6158.16853.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LT98_ECTSI6.320e-11982.25Conserved C2H2 zinc finger protein n=1 Tax=Ectocar... [more]
A0A6H5JRH3_9PHAE4.090e-5079.82t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835YH57_9STRA7.160e-1240.00C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 69..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6158contigEcto-sp13_S_contig6158:919..4534 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6158.16853.1mRNA_Ecto-sp13_S_contig6158.16853.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6158 2..5448 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6158.16853.1 ID=prot_Ecto-sp13_S_contig6158.16853.1|Name=mRNA_Ecto-sp13_S_contig6158.16853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=324bp
MVLDSTRYAIERSARVLRGMNFWGKIRNAFSDDPEVPQQPAGNTLAGTAT
GNGGKGNDDPDTPAEGFICPDCRGLFPTSDALVAHYGSAHTIAGADDDDD
ARGWGGGGGATPYGTAEGGDGVARRVPGFRRAGGEGAGPPGPQHWGEPGR
AGGHAGSGGGEVVGGERPHGVRHAQGRAAGAELEAQEPDLCHESGAAGGD
DGPVPCGYRRGGGAAGQGAEERLPLRGVGETAWNHRLEERRHEEMARPDV
SRIPQGVRLEFRQEPRMAGRPAGKGDDHGLLLGQLGRGRLPLRPPQRHQH
QKRRNNPRGSHSGQRWRQHEQRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type