mRNA_Ecto-sp13_S_contig6156.16852.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6156.16852.1
Unique NamemRNA_Ecto-sp13_S_contig6156.16852.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6156.16852.1 vs. uniprot
Match: A0A6H5L791_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L791_9PHAE)

HSP 1 Score: 494 bits (1271), Expect = 5.890e-172
Identity = 239/252 (94.84%), Postives = 241/252 (95.63%), Query Frame = 3 
Query:    3 EGQWAQHEWRQMMVRTRLSRRRLYDCLISVLDEKDHDFGDIRRVLERGMKNGAVSLMKDQQGGASADQAVDFHGWSTRSARCIVRCIIEDLTLGQDFLHRTGQYDLGRAALAQGLREFGNVSDRWHVDSPDPRGRRREFADGVTPARFAEREYGKGRKRNTENTPRWVKPEGGWDGRRSDESQARWWEKQKRLSFVVGKPRPPPCIRNAVEEFCMLGVSPPLRVQKAASNPGILTIEPEDVQAWLERNPRVL 758
            EGQWAQ+EWR M+VRTRLSRRRLYDCLISVLDEKDHDFGDIRRVLE GMKNGAVSLMKDQQGG SADQAVDFHGWSTRSARCIVRCIIEDLTLGQDFLHRTGQYDLGR ALAQGLREFGNVSDRWHVDSPDPRGRRREFADGVTPARFAEREYGKGRKRN E    WVKPEGGWDGR SDESQARWWEKQKRLS VVGKPRPPPCIRNAVEEFCMLGVSPPLRVQKAASNPGILTIEPEDVQAWLERNPRVL
Sbjct:  153 EGQWAQYEWRAMLVRTRLSRRRLYDCLISVLDEKDHDFGDIRRVLETGMKNGAVSLMKDQQGGTSADQAVDFHGWSTRSARCIVRCIIEDLTLGQDFLHRTGQYDLGRVALAQGLREFGNVSDRWHVDSPDPRGRRREFADGVTPARFAEREYGKGRKRNPEKKSHWVKPEGGWDGRGSDESQARWWEKQKRLSLVVGKPRPPPCIRNAVEEFCMLGVSPPLRVQKAASNPGILTIEPEDVQAWLERNPRVL 404
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BLAST of mRNA_Ecto-sp13_S_contig6156.16852.1 vs. uniprot
Match: D7FZA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA3_ECTSI)

HSP 1 Score: 499 bits (1284), Expect = 1.740e-166
Identity = 240/252 (95.24%), Postives = 245/252 (97.22%), Query Frame = 3 
Query:    3 EGQWAQHEWRQMMVRTRLSRRRLYDCLISVLDEKDHDFGDIRRVLERGMKNGAVSLMKDQQGGASADQAVDFHGWSTRSARCIVRCIIEDLTLGQDFLHRTGQYDLGRAALAQGLREFGNVSDRWHVDSPDPRGRRREFADGVTPARFAEREYGKGRKRNTENTPRWVKPEGGWDGRRSDESQARWWEKQKRLSFVVGKPRPPPCIRNAVEEFCMLGVSPPLRVQKAASNPGILTIEPEDVQAWLERNPRVL 758
            EGQWAQHEWRQM+VRTRLSRRRLYDCLISVLDEKDHDFGDIRRVLERGM+NGAVSLMKDQQGG SADQAVDFHGWSTRSA CIVRCIIEDLTLGQDFLHRTGQYDLGRAALAQGLREFGNVSDRWHVDSPDPRGRRREFADGVTPARFAEREYGKGRKRN E+TPRWVKPEGGWDG  SDESQARWWEKQKRLS VVG+PRPPPCIRNAVEEFCMLGVSPPLRVQKAASNPGILTIEPEDVQAWL RNPR+L
Sbjct:  702 EGQWAQHEWRQMLVRTRLSRRRLYDCLISVLDEKDHDFGDIRRVLERGMRNGAVSLMKDQQGGTSADQAVDFHGWSTRSAGCIVRCIIEDLTLGQDFLHRTGQYDLGRAALAQGLREFGNVSDRWHVDSPDPRGRRREFADGVTPARFAEREYGKGRKRNPESTPRWVKPEGGWDGCGSDESQARWWEKQKRLSLVVGRPRPPPCIRNAVEEFCMLGVSPPLRVQKAASNPGILTIEPEDVQAWLGRNPRIL 953
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6156.16852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L791_9PHAE5.890e-17294.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZA3_ECTSI1.740e-16695.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6156contigEcto-sp13_S_contig6156:5165..7761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score477.2
Seed ortholog evalue4.4e-132
Seed eggNOG ortholog2880.D7FZA3
Model size1120
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size726
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463857.9809544-UTR-Ecto-sp13_S_contig6156:5164..55231681463857.9809544-UTR-Ecto-sp13_S_contig6156:5164..5523Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6156 5165..5523 -
1681463858.0274677-UTR-Ecto-sp13_S_contig6156:7726..77611681463858.0274677-UTR-Ecto-sp13_S_contig6156:7726..7761Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6156 7727..7761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463857.9927018-CDS-Ecto-sp13_S_contig6156:5523..61051681463857.9927018-CDS-Ecto-sp13_S_contig6156:5523..6105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6156 5524..6105 -
1681463858.006342-CDS-Ecto-sp13_S_contig6156:6685..68001681463858.006342-CDS-Ecto-sp13_S_contig6156:6685..6800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6156 6686..6800 -
1681463858.0172496-CDS-Ecto-sp13_S_contig6156:7697..77261681463858.0172496-CDS-Ecto-sp13_S_contig6156:7697..7726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6156 7698..7726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6156.16852.1prot_Ecto-sp13_S_contig6156.16852.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6156 5524..7726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6156.16852.1

>prot_Ecto-sp13_S_contig6156.16852.1 ID=prot_Ecto-sp13_S_contig6156.16852.1|Name=mRNA_Ecto-sp13_S_contig6156.16852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MMVRTRLSRRRLYDCLISVLDEKDHDFGDIRRVLERGMKNGAVSLMKDQQ
GGASADQAVDFHGWSTRSARCIVRCIIEDLTLGQDFLHRTGQYDLGRAAL
AQGLREFGNVSDRWHVDSPDPRGRRREFADGVTPARFAEREYGKGRKRNT
ENTPRWVKPEGGWDGRRSDESQARWWEKQKRLSFVVGKPRPPPCIRNAVE
EFCMLGVSPPLRVQKAASNPGILTIEPEDVQAWLERNPRVL*
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mRNA from alignment at Ecto-sp13_S_contig6156:5165..7761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6156.16852.1 ID=mRNA_Ecto-sp13_S_contig6156.16852.1|Name=mRNA_Ecto-sp13_S_contig6156.16852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6156:5165..7761- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGGGGCAGTGGGCCCAGCACGAGTGGCGACAGATGATGGTCAGAACA
AGACTCTCCAGGAGGTGAACTATTTGAAGCAATTTTGATGAAGGTCGTCG
TCACGATGTTGTGTGTTCCTCTCTACGTGGACGTCGAAAAGAGAGAACGA
GTGGTGGATGTACGAGGCATACCGCACACACAACGACAAAAAGAGTGGAA
ATGAAAATTCTTGGGAGAGGAGGTAACAAAACTGCTGTACAAGTCTAGTG
AGCCGGGGTCGGCGCGATTGTTGCAAAGCGAACGACGAACGAGGTCTACC
GTAGGATGTAAAACATGTCTTGATTGCTCCTTGAGAAGACGTGGGAAAGT
AACCAGACCACTTGTTGTGTAACCCGCGCTACGACTTGTTCATGCTTTGA
TTTTGAGGGGGAAAATGAGATGCCGGCAAAAAAACGATTTGGGTCCTGGG
CTTTGCTGTTGAGCTTCGGATGACATGACTTCTCTTACTGGAGCATTCGA
AGGCTTGCCGAAGTCAACCAGGCCTCGCCTTGCCGACACCTGTCGAGGTT
CATCTTTCGTCTTTGCCACGAGGGTCAGGTTGCACGAAAAACAGCTCGTC
TTCGCGGACTATGACTGTTGAATGCGAAAGTGATGCGTACGCGGCTCTTC
ACCATCAAAAGCTTTGCTCTCTTCATACGTCTCGTCGTCTCCTCCTACAA
CCTGTAGACCACGAAACAAGCCGTATGCGCTGCTTCACCGGAGTGTTTCC
CATTCGGGAAGGTCTTGGTGTGACGTCATGCCTTAGAATATTACCTCCAG
CTGTGTCCTCTGTGGACCCTCGTTATCATTTATTGGACGCTCCTTGTGCT
GGTGCTCCACCCTACATTGTCGTGTACGTCTACCTCCTTTGATGATATCC
GGGCTACCGTACACCTCCTATTTATTGGCCTTTTCGATATTTTTTGTTGT
TGTTCGGACAGACGGTTGTACGACTGCTTGATTTCGGTGCTGGATGAGAA
GGATCACGACTTCGGCGACATCCGACGGGTGCTGGAGAGAGGCATGAAGA
ACGGCGCCGTGTCGTTGATGAAAGACGTGAGGAGGAAGAGGAGCAGGAGG
AGCAGGATAGGATCAATTGATTTTCATGGCGTTCACAGGGATAGTAGATG
GCTGTACAGTAGTGGTGTGTCTTCATGTGGTTGTTTTGGTGGTTGCATGG
AGGAAATCTTGGGGGTCAGTCTCGGAGATGTGGATACCTTGGAAATGCTT
GTAGACGTCCGAACAGAACCCGATTCTTGTTGTAACTACAAGTAGTTGCA
GCAGAGGAAGGAGTTCGAGAGGAAAGACCCTCATCGTACGTGTAGTGGCC
GGTTCTAGCGTGCGGCCGATTTCGCCGCCTCCGTACGCCCCAATTCGAAT
CGAATCGAATGATGAAGCACGGCTGGCATTTTTGTCGTTTTGTGGCAGCG
GCTGCCCGATTGCGGTACATTTCATATGCATGTCCGCAGCTACAGAGCAG
CACGTGAGCGGGGGACGTTTCCGTTGCGCATTTGGTGAGTCGTGATGCGG
CTCCTGGCGAGCAGCTGCTACACTGTGGTTTTCCTTGACCTCTTGCGTAG
GAGTGACCCCCTCCCCCCCCCCCTTCCCGCACTGCGTGGCCCCTAATTAC
CTGCAGCAACAAGGTGGCGCGTCGGCGGATCAGGCGGTGGACTTCCACGG
CTGGTCCACGCGAAGCGCTCGGTGCATTGTCCGCTGCATCATCGAAGACC
TCACCCTCGGCCAGGACTTCCTCCATCGAACCGGCCAGTACGACCTTGGT
AGAGCGGCCCTCGCCCAGGGCCTGCGGGAGTTCGGCAACGTCAGCGATAG
GTGGCACGTTGACAGTCCCGACCCCAGGGGTAGGCGGCGGGAGTTCGCCG
ACGGTGTGACCCCGGCCCGGTTCGCGGAACGAGAGTACGGTAAAGGCCGG
AAACGGAATACCGAGAACACTCCTCGTTGGGTGAAACCCGAGGGAGGCTG
GGACGGACGTAGGTCCGACGAGAGTCAGGCCAGGTGGTGGGAGAAGCAGA
AGCGCTTGTCCTTCGTTGTGGGGAAGCCTAGACCGCCCCCGTGCATCCGT
AACGCGGTGGAGGAGTTCTGCATGCTGGGGGTGTCCCCGCCCCTGAGAGT
GCAGAAGGCGGCGTCCAACCCCGGGATCTTGACTATCGAGCCGGAGGACG
TGCAGGCGTGGTTGGAGCGAAATCCGCGCGTCTTGTAATTTTTTATTATA
GTTGTGTTTTTACTCGTCGGCGGCGGTGTCTTCGCAAACTGGTGTGGTGG
TGTGTTCGTCATGGACGTGGCAACCGAGAATATGCAGCTGCGATGTGGAC
AATCAGACCAATCATGGTGCTGCCAGAAGATTTTTTTGAAGGGAGGTTTG
GAAGATAAACCCACCTGTGTGTCTCGTGTGCTTGGTCGAAGATTTGGACT
TGGACTTGCGTGCCTGAGGGCAACGAGTATCCTGTATGCTGGATGCTTCC
GTACGAGCGCTCTACCGGTTGAAGACTTTGGAATGCATAGCGGGAATTTC
TTGAAGAAGTGCTGCTGATGGCTGATGGTCGCCGGCGTACCAGTGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6156:5165..7761-

>mRNA_Ecto-sp13_S_contig6156.16852.1 ID=mRNA_Ecto-sp13_S_contig6156.16852.1|Name=mRNA_Ecto-sp13_S_contig6156.16852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6156:5165..7761- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGTCAGAACAAGACTCTCCAGGAGACGGTTGTACGACTGCTTGAT
TTCGGTGCTGGATGAGAAGGATCACGACTTCGGCGACATCCGACGGGTGC
TGGAGAGAGGCATGAAGAACGGCGCCGTGTCGTTGATGAAAGACCAACAA
GGTGGCGCGTCGGCGGATCAGGCGGTGGACTTCCACGGCTGGTCCACGCG
AAGCGCTCGGTGCATTGTCCGCTGCATCATCGAAGACCTCACCCTCGGCC
AGGACTTCCTCCATCGAACCGGCCAGTACGACCTTGGTAGAGCGGCCCTC
GCCCAGGGCCTGCGGGAGTTCGGCAACGTCAGCGATAGGTGGCACGTTGA
CAGTCCCGACCCCAGGGGTAGGCGGCGGGAGTTCGCCGACGGTGTGACCC
CGGCCCGGTTCGCGGAACGAGAGTACGGTAAAGGCCGGAAACGGAATACC
GAGAACACTCCTCGTTGGGTGAAACCCGAGGGAGGCTGGGACGGACGTAG
GTCCGACGAGAGTCAGGCCAGGTGGTGGGAGAAGCAGAAGCGCTTGTCCT
TCGTTGTGGGGAAGCCTAGACCGCCCCCGTGCATCCGTAACGCGGTGGAG
GAGTTCTGCATGCTGGGGGTGTCCCCGCCCCTGAGAGTGCAGAAGGCGGC
GTCCAACCCCGGGATCTTGACTATCGAGCCGGAGGACGTGCAGGCGTGGT
TGGAGCGAAATCCGCGCGTCTTGTAA
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