mRNA_Ecto-sp13_S_contig61519.16847.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61519.16847.1
Unique NamemRNA_Ecto-sp13_S_contig61519.16847.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61519.16847.1 vs. uniprot
Match: D7FXB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB2_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 4.510e-36
Identity = 72/78 (92.31%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 RGVVAVLDDGHEMDPCSCDLVKASTKYLHQRLLVVLVSPPLPGIITKHRHASGSSASHGGGRSDSGEREGEHGDEDSS 234
            RGVVAVLDDGHEMDP SCDLVKASTKYLHQRLLVVLVSPPLPGIITKHRH SGS ASHGGGRSDSG   GEHGDEDSS
Sbjct:  187 RGVVAVLDDGHEMDPYSCDLVKASTKYLHQRLLVVLVSPPLPGIITKHRHTSGSCASHGGGRSDSGGHVGEHGDEDSS 264
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BLAST of mRNA_Ecto-sp13_S_contig61519.16847.1 vs. uniprot
Match: A0A835YQ74_9STRA (Guanylate cyclase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ74_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 9.630e-6
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:    7 VVAVLDDGHEMDPCSCDLVKASTKYLHQRLLVVLVSPPLP---GIITKHRHASGSSASHGGGRSDS 195
            ++ V+D  H+MDP S DL+KA+ KYL +R+L ++ +PPLP   G   + R    S  SH  GR  S
Sbjct: 1204 LLVVMDGAHQMDPQSGDLLKATLKYLGERVLFIVTTPPLPPRAGPALRSRRRRSSGPSHRAGRDSS 1269
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61519.16847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXB2_ECTSI4.510e-3692.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQ74_9STRA9.630e-642.42Guanylate cyclase domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61519contigEcto-sp13_S_contig61519:208..811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size237
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463857.6494792-CDS-Ecto-sp13_S_contig61519:207..2731681463857.6494792-CDS-Ecto-sp13_S_contig61519:207..273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61519 208..273 +
1681463857.6586745-CDS-Ecto-sp13_S_contig61519:641..8091681463857.6586745-CDS-Ecto-sp13_S_contig61519:641..809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61519 642..809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61519.16847.1prot_Ecto-sp13_S_contig61519.16847.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61519 208..809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61519.16847.1

>prot_Ecto-sp13_S_contig61519.16847.1 ID=prot_Ecto-sp13_S_contig61519.16847.1|Name=mRNA_Ecto-sp13_S_contig61519.16847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
RGVVAVLDDGHEMDPCSCDLVKASTKYLHQRLLVVLVSPPLPGIITKHRH
ASGSSASHGGGRSDSGEREGEHGDEDSS
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mRNA from alignment at Ecto-sp13_S_contig61519:208..811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61519.16847.1 ID=mRNA_Ecto-sp13_S_contig61519.16847.1|Name=mRNA_Ecto-sp13_S_contig61519.16847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=604bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61519:208..811+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGCGTCGTCGCTGTTCTGGACGACGGCCACGAGATGGACCCTTGCAG
CTGCGACCTCGTTAAGGTAAGCATTTTCTTTTCCCGATGCCCCGATGGTC
AGGTAGCCTTAACCGCAAAAAACGGCCATCCTCACTCGCGCATTGACAGA
GTCCAGTGTGTTGCCGCCGGTGTAACTCAAAAGGCGCCACCTTGCAGCCA
GTGCCCCCGTAGCTGCCATATATTCAACATCTCAACAGCTCCACACCGGA
ATCAATGTCGCACAACGATCGTGTTGCCGTACGTCTGGAGCTCTCTCCCA
CCGGAGTCTCACCCCCAACTACCCTGAACTATCTCTTTGTACCCGAGCCG
GTCGGCCAAGGTTAGGTCTACAGAACGCTTGCATCAAATGAAAACGAATC
CTCCCAATGCTGGTGCGTGATCGATCGCACGCAGGCGTCCACCAAGTATC
TTCACCAGCGGCTTCTAGTGGTCCTTGTTAGCCCTCCGCTGCCGGGGATC
ATCACCAAGCATCGCCACGCTTCCGGAAGTAGTGCGTCTCACGGAGGAGG
AAGAAGCGACAGTGGCGAACGCGAGGGTGAACATGGAGACGAAGACAGCA
GCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61519:208..811+

>mRNA_Ecto-sp13_S_contig61519.16847.1 ID=mRNA_Ecto-sp13_S_contig61519.16847.1|Name=mRNA_Ecto-sp13_S_contig61519.16847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61519:208..811+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGCGTCGTCGCTGTTCTGGACGACGGCCACGAGATGGACCCTTGCAG
CTGCGACCTCGTTAAGGCGTCCACCAAGTATCTTCACCAGCGGCTTCTAG
TGGTCCTTGTTAGCCCTCCGCTGCCGGGGATCATCACCAAGCATCGCCAC
GCTTCCGGAAGTAGTGCGTCTCACGGAGGAGGAAGAAGCGACAGTGGCGA
ACGCGAGGGTGAACATGGAGACGAAGACAGCAGC
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