mRNA_Ecto-sp13_S_contig61516.16846.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61516.16846.1
Unique NamemRNA_Ecto-sp13_S_contig61516.16846.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig61516.16846.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 4.090e-37
Identity = 70/117 (59.83%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 MGGLAWDCIHINKNGFTYAPNGAGLTGLVDEAMFFHSIFKEKWEEETDLEKTLNKIIATQHVESQLQVFFISLAKPEYKFAVCRESVRSLNTDYIQRMVMTVARELASAHCDKGFDV 351
            MG L WD +H+NKNGF++APNG G TGLVDE  FF+ I+K +     ++E TL KI+ATQ+VE    +FF+S+ KPEYKF V RE+VRSL+TDYIQRM++ V R LA AH DK FDV
Sbjct:  625 MGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETAFFNPIYKHEGGVVKEVEPTLEKIVATQYVE----MFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDV 737          
BLAST of mRNA_Ecto-sp13_S_contig61516.16846.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 5.780e-36
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 MGGLAWDCIHINKNGFTYAPNGAGLTGLVDEAMFFHSIFKEKWEEETDLEKTLNKIIATQHVESQLQVFFISLAKPEYKFAVCRESVRSLNTDYIQRMVMTVARELASAHCDKGFDV 351
            MG LAWD +H+NKNGF++APNG G TGLVDE  FF+ I+K +     ++E  L KI+ATQ+VE    ++F+S+ KPEYKF V RE+VRSL+TD+IQRM++ V R LA AH DK FDV
Sbjct:  392 MGVLAWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGIVKEVEPILEKIVATQYVE----MYFVSVGKPEYKFVVWREAVRSLSTDFIQRMLIRVMRSLAMAHPDKAFDV 504          
BLAST of mRNA_Ecto-sp13_S_contig61516.16846.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 9.180e-36
Identity = 68/117 (58.12%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    1 MGGLAWDCIHINKNGFTYAPNGAGLTGLVDEAMFFHSIFKEKWEEETDLEKTLNKIIATQHVESQLQVFFISLAKPEYKFAVCRESVRSLNTDYIQRMVMTVARELASAHCDKGFDV 351
            MG L WD +H+NKNGF++APNG G TGLVDE  FF+ I+K +     ++E  L KI+ATQ+VE    +FF+S+ KPEYKF V RE+VRSL+TDYIQRM++   R LA AH DK FDV
Sbjct:  534 MGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGVVKEVEPILEKIVATQYVE----MFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDV 646          
BLAST of mRNA_Ecto-sp13_S_contig61516.16846.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.460e-33
Identity = 65/116 (56.03%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    4 GGLAWDCIHINKNGFTYAPNGAGLTGLVDEAMFFHSIFKEKWEEETDLEKTLNKIIATQHVESQLQVFFISLAKPEYKFAVCRESVRSLNTDYIQRMVMTVARELASAHCDKGFDV 351
            G L+WD  H++KNG  +AP    LTGLVDEA FF+ +++ K +E+  L K L KI+ATQ+VE     FF+SL  PEYKF V RE+VRSL+TDYIQRM+    R L+ AH DKGFDV
Sbjct:  153 GVLSWDLTHLSKNGLDFAPKEGRLTGLVDEATFFNPVYQGKVDEDGGLGKQLGKILATQYVE-----FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLSIAHRDKGFDV 263          
BLAST of mRNA_Ecto-sp13_S_contig61516.16846.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 4.560e-21
Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 MGGLAWDCIHINKNGFTYAPNGAGLTGLVDEAMFFHSIFK--EKWEEETDLEKTLNKIIATQHVESQLQVFFISLAKPEYKFAVCRESVRSLNTDYIQRMVMTVARELASAHCDKGFDV 351
            +G L WD +H+N+N F   PNG G+ GLVD   FF       +  +E   LEKTL   +ATQ++E    VF++S+  P+YKF V RE+VR L+   I RM+  +  +L  AH DK FDV
Sbjct:  380 LGILVWDLMHLNQNDFRVCPNGGGIEGLVDRDSFFRHPLDAVQGVDEHITLEKTLETFVATQYLE----VFWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEITNKLYEAHEDKKFDV 494          
BLAST of mRNA_Ecto-sp13_S_contig61516.16846.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.360e-19
Identity = 49/116 (42.24%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   10 LAWDCIHINKNGFTYAPNGAGLTGLVD-EAMFFHSIFKEKWEEET-DLEKTLNKIIATQHVESQLQVFFISLAKPEYKFAVCRESVRSLNTDYIQRMVMTVARELASAHCDKGFDV 351
            L WDC+H+N NGFT  PNG G++GLV  +++ +H +   +  ++T  LE TL   +ATQ++E    V+++S+  P+YKF V RE+VR L+   I RM+  +   L  AH DK  DV
Sbjct:  168 LCWDCMHLNTNGFTVRPNGGGISGLVSGDSVLYHPLEAVQGVDKTISLEDTLETFMATQYLE----VWWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEIMLRLYEAHPDKKIDV 279          
BLAST of mRNA_Ecto-sp13_S_contig61516.16846.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.240e-14
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    4 GGLAWDCIHINKNGFTYAPNGAGLTGLVDEAMFFHSIFKEKWEEETDLEKTLNKIIATQHVESQLQV 204
            G L+WD  H++KNGF +AP   G TGLVDEA FF+ +++ K +E+ DL+K L+KI+AT++VE    V
Sbjct:  212 GVLSWDLTHLSKNGFDFAPKEGGFTGLVDEATFFNPVYQRKVDEDGDLDKQLDKILATKYVERTFNV 278          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61516.16846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KVF4_9PHAE4.090e-3759.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5M0_9PHAE5.780e-3658.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI9.180e-3658.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5R1_ECTSI1.460e-3356.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFP1_9PHAE4.560e-2143.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.360e-1942.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM8_ECTSI2.240e-1450.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61516contigEcto-sp13_S_contig61516:159..790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size353
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463857.611377-CDS-Ecto-sp13_S_contig61516:158..3201681463857.611377-CDS-Ecto-sp13_S_contig61516:158..320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61516 159..320 -
1681463857.6223068-CDS-Ecto-sp13_S_contig61516:601..7901681463857.6223068-CDS-Ecto-sp13_S_contig61516:601..790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61516 602..790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61516.16846.1prot_Ecto-sp13_S_contig61516.16846.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61516 159..790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61516.16846.1

>prot_Ecto-sp13_S_contig61516.16846.1 ID=prot_Ecto-sp13_S_contig61516.16846.1|Name=mRNA_Ecto-sp13_S_contig61516.16846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MGGLAWDCIHINKNGFTYAPNGAGLTGLVDEAMFFHSIFKEKWEEETDLE
KTLNKIIATQHVESQLQVFFISLAKPEYKFAVCRESVRSLNTDYIQRMVM
TVARELASAHCDKGFDV
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mRNA from alignment at Ecto-sp13_S_contig61516:159..790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61516.16846.1 ID=mRNA_Ecto-sp13_S_contig61516.16846.1|Name=mRNA_Ecto-sp13_S_contig61516.16846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=632bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61516:159..790- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGGTCTGGCATGGGACTGCATCCACATCAACAAGAACGGCTTCAC CTACGCTCCGAACGGAGCGGGGTTGACGGGCCTCGTGGACGAAGCTATGT TCTTCCATTCCATTTTCAAGGAGAAATGGGAGGAGGAAACGGATTTGGAG AAGACTCTGAACAAGATCATCGCCACGCAACACGTTGAGGTGGTGTTTGA TTATTGGCTTCACCAGGTGTTCAAAGGTTAATTCGAAATTGCGGTGTGTT ACGGCGCGGCCGGCAAAGGCTCAACGTTGACTAGGAATCGTCGTCGTCAC GGTTTGCTCTCGGGATTTGTATCGGTGTCGACAGACGCGTGGCGCAGACA TCGAAGTTTCCCCACTTACCCCATCATCACCCTCGGCTCAACATCGCGGG AGGGACCATCGACCGTATCCCGTCTCTTCCCTTCTTACACCAGTGTTTTT TTTTTCGCTTCCATCCCCAGTCCCAACTACAGGTGTTCTTCATCAGCCTG GCCAAACCGGAGTACAAGTTCGCCGTGTGCCGCGAATCCGTCAGATCTCT CAACACGGACTACATCCAGCGAATGGTGATGACAGTTGCGCGCGAGCTGG CATCCGCTCACTGCGACAAGGGGTTCGATGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61516:159..790-

>mRNA_Ecto-sp13_S_contig61516.16846.1 ID=mRNA_Ecto-sp13_S_contig61516.16846.1|Name=mRNA_Ecto-sp13_S_contig61516.16846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61516:159..790- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGGTCTGGCATGGGACTGCATCCACATCAACAAGAACGGCTTCAC
CTACGCTCCGAACGGAGCGGGGTTGACGGGCCTCGTGGACGAAGCTATGT
TCTTCCATTCCATTTTCAAGGAGAAATGGGAGGAGGAAACGGATTTGGAG
AAGACTCTGAACAAGATCATCGCCACGCAACACGTTGAGTCCCAACTACA
GGTGTTCTTCATCAGCCTGGCCAAACCGGAGTACAAGTTCGCCGTGTGCC
GCGAATCCGTCAGATCTCTCAACACGGACTACATCCAGCGAATGGTGATG
ACAGTTGCGCGCGAGCTGGCATCCGCTCACTGCGACAAGGGGTTCGATGT
C
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