prot_Ecto-sp13_S_contig6151.16845.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6151.16845.1
Unique Nameprot_Ecto-sp13_S_contig6151.16845.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length328
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6151.16845.1 vs. uniprot
Match: A0A6H5JDM9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM9_9PHAE)

HSP 1 Score: 453 bits (1165), Expect = 1.720e-151
Identity = 260/270 (96.30%), Postives = 265/270 (98.15%), Query Frame = 0 
Query:   25 MDNEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQNRGKRAAQARTSAKNQEVTQTTVHRLAEGLLDHIVPQGPTYALRSSSNIKGEWRLSDAESFRTLVPAMKAADPSEGSGSKHRLDLRDDTIAPSDTETAHFSHSHMMASLVQAKGNPEVSIVHGTLNVGGAATKSGVDTLFEGLFFHKYGHMSAVVGASGDELKVVWTPPASXXXXXXXXXXXXXXXXXXXXXXXXXPSPPKVEPLEDNSVGSGGSDRLTSGINEADEG 294
            MDNEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQ+RGKRAAQARTSAKNQEVT+TTVHRLAEGLLDHIVPQGPTYALRSSSNIKGEWRLSDAESFRT+VPAMKAADPSEGSGSKHRLDLRD+TIAPSDTETAHFSHSHMMASLVQAKGNPEVSIVHGTLNVGGAATKSGVDTLFEGLFFHK+GHMSAVVGASGDELKVVWTPPASXXXXXXXXXXXXXXXXXXXXXXXXX    KVEPLEDNSVGSGG DRLTSGINEADEG
Sbjct:    1 MDNEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQDRGKRAAQARTSAKNQEVTRTTVHRLAEGLLDHIVPQGPTYALRSSSNIKGEWRLSDAESFRTVVPAMKAADPSEGSGSKHRLDLRDETIAPSDTETAHFSHSHMMASLVQAKGNPEVSIVHGTLNVGGAATKSGVDTLFEGLFFHKFGHMSAVVGASGDELKVVWTPPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVEPLEDNSVGSGGGDRLTSGINEADEG 270
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6151.16845.1 vs. uniprot
Match: D8LPM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM4_ECTSI)

HSP 1 Score: 429 bits (1103), Expect = 1.130e-142
Identity = 255/274 (93.07%), Postives = 259/274 (94.53%), Query Frame = 0 
Query:   25 MDNEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQNRGKRAAQARTSAKNQEVTQTTVHRLAEGLLDHIVPQGPTYALRSSSNIKGEWRLSDAESFRTLVPAMKAADPSEGSGSKHRLDLRDDTIAPSDTETAHFSHSHMMASLVQAKGNPEVSIVHGTLNVGGAATKS-GVDTLFEGLFFHKYGHMSAVVGASGDELKVVWTPPASXXXXXXXXXXXXXXXXXXXXXXXXXPSPPKVEPLEDNSVGSGGS-DRLTSGINEADEGGE 296
            MDNEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQNRGKRAAQARTSAKNQEVT+TTVHRLAEGLLDHIVPQGPTYALRSSS IKGEWRLSDAESFRT+VPAMKAADPSEGSGSKHRLDLRD+TIAPSDTETAH SHS MMASLVQAKGNPEVSIVHGTLNVG AATKS GVDTLFEGLFFHKYGHMSAVVGASGDELKVVWTP   XXXXXXXXXXXXXXXXXXXXXXXXX     VEPLEDNSVGSGG  DRLTSGINEAD+GGE
Sbjct:    1 MDNEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQNRGKRAAQARTSAKNQEVTRTTVHRLAEGLLDHIVPQGPTYALRSSSEIKGEWRLSDAESFRTVVPAMKAADPSEGSGSKHRLDLRDETIAPSDTETAHSSHSRMMASLVQAKGNPEVSIVHGTLNVGDAATKSSGVDTLFEGLFFHKYGHMSAVVGASGDELKVVWTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPLEDNSVGSGGGGDRLTSGINEADKGGE 274
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6151.16845.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDM9_9PHAE1.720e-15196.30RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LPM4_ECTSI1.130e-14293.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 62..328
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..43
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 44..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6151contigEcto-sp13_S_contig6151:1288..7204 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6151.16845.1mRNA_Ecto-sp13_S_contig6151.16845.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6151 1288..7204 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6151.16845.1 ID=prot_Ecto-sp13_S_contig6151.16845.1|Name=mRNA_Ecto-sp13_S_contig6151.16845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=328bp
GGRVIVLSRCHITALPTTEGGQERMDNEFGDDDGLRQARSRRRFQTGLVI
FLLFFFMDARTPQETQNRGKRAAQARTSAKNQEVTQTTVHRLAEGLLDHI
VPQGPTYALRSSSNIKGEWRLSDAESFRTLVPAMKAADPSEGSGSKHRLD
LRDDTIAPSDTETAHFSHSHMMASLVQAKGNPEVSIVHGTLNVGGAATKS
GVDTLFEGLFFHKYGHMSAVVGASGDELKVVWTPPASSSIAAASPGVAAG
EAVPPSAAAAAAPSPPKVEPLEDNSVGSGGSDRLTSGINEADEGGESSNS
IATGPVVSAASSSGGSSSSSSSSSGDAD
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