mRNA_Ecto-sp13_S_contig6149.16840.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6149.16840.1
Unique NamemRNA_Ecto-sp13_S_contig6149.16840.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6149.16840.1 vs. uniprot
Match: A0A6H5KT28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT28_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 1.550e-104
Identity = 174/245 (71.02%), Postives = 178/245 (72.65%), Query Frame = 1 
Query:    1 IDKEAAQTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVNTRFQKFCLDPLLTANVPPTAGTVLPAKIKSLRSSASPLGIVKTPCALETPAVSIEKTVGRFALCPTQAHRGTGNYAYVNVVREVAAATSHFRVLALSATPGSDIKV 735
            IDKEAA+TWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACY+IMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVV                                                                   +AHRGTGNYAYVNV+REVAAATSHFRVLALSATPGSDIKV
Sbjct:   98 IDKEAAKTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYNIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVV-----------------------------------------------------------------VDEAHRGTGNYAYVNVIREVAAATSHFRVLALSATPGSDIKV 277
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BLAST of mRNA_Ecto-sp13_S_contig6149.16840.1 vs. uniprot
Match: D7FP48_ECTSI (DEAD box helicase similar to CG7922-PA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP48_ECTSI)

HSP 1 Score: 324 bits (830), Expect = 4.280e-98
Identity = 171/244 (70.08%), Postives = 176/244 (72.13%), Query Frame = 1 
Query:    1 IDKEAAQTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVNTRFQKFCLDPLLTANVPPTAGTVLPAKIKSLRSSASPLGIVKTPCALETPAVSIEKTVGRFALCPTQAHRGTGNYAYVNVVREVAAATSHFRVLALSATPGSDIK 732
            ID+EAAQTWIYPVNYPIRQYQLQIVTQALF+NTLVALPTGLGKTLIAAVVMYNYYRWFP GKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVV                                                                   +AHRGTGNYAYVNV+REVAAAT+HFRVLALSATPGSDIK
Sbjct:  102 IDEEAAQTWIYPVNYPIRQYQLQIVTQALFQNTLVALPTGLGKTLIAAVVMYNYYRWFPRGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVV-----------------------------------------------------------------VDEAHRGTGNYAYVNVIREVAAATAHFRVLALSATPGSDIK 280
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BLAST of mRNA_Ecto-sp13_S_contig6149.16840.1 vs. uniprot
Match: A0A397EJI9_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EJI9_9STRA)

HSP 1 Score: 249 bits (635), Expect = 3.480e-79
Identity = 135/248 (54.44%), Postives = 167/248 (67.34%), Query Frame = 1 
Query:    1 IDKEAAQTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVNTRFQKFCLD--PLLTANVPPTAGTVLPAKIKSLRSSASPLGIVKTPCALETPAVSIEKTVGRFA-LCPTQAHRGTGNYAYVNVVREVAAATSHFRVLALSATPGSDIKV 735
            ID++ A  WIYP NYP+R YQ  I   AL +NTLV LPTGLGKTLIAAVVM+N+YRWFP GK+VF+APTKPLV+QQI AC+D+M +P+ D AELQG+V P KR QLW  +RVFFCTPQS+ NDI+   CD   FVCVV+ + Q  C D  P+  +++    G V PAK K L   A+      TP +L+         V  F  +   +AHR TGNYAYV V++ +AA  S FRVLALSATPG+   V
Sbjct:   14 IDRDLATQWIYPSNYPVRAYQQSISRAALLQNTLVCLPTGLGKTLIAAVVMFNFYRWFPRGKIVFMAPTKPLVSQQIQACHDVMPIPQSDMAELQGNVAPAKRKQLWATKRVFFCTPQSLQNDIERGNCDVRSFVCVVSQQIQA-CHDVMPIPQSDMAELQGNVAPAKRKQLW--ATKRVFFCTPQSLQNDIERGNCDVRSFVCVVVDEAHRATGNYAYVVVIKAIAAKVSGFRVLALSATPGAKFDV 258
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BLAST of mRNA_Ecto-sp13_S_contig6149.16840.1 vs. uniprot
Match: A0A418AL25_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AL25_9STRA)

HSP 1 Score: 222 bits (565), Expect = 2.600e-69
Identity = 118/245 (48.16%), Postives = 140/245 (57.14%), Query Frame = 1 
Query:    1 IDKEAAQTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVNTRFQKFCLDPLLTANVPPTAGTVLPAKIKSLRSSASPLGIVKTPCALETPAVSIEKTVGRFALCPTQAHRGTGNYAYVNVVREVAAATSHFRVLALSATPGSDIKV 735
            ID++ A  WIYP NYP+R YQ  I   AL++NTLV LPTGLGKTLIAAVVMYN++RWFP GK+VF+APTKPLV+QQI AC+D+M +P+ D AELQG+V P KR  LW  +RVFFCTPQSM NDI+   CD   FVCVV                                                                   +AHR TGNYAYV V++ +AA  S FRVLALSATPG+   V
Sbjct:   23 IDRDLATQWIYPSNYPVRAYQQSISRAALYQNTLVCLPTGLGKTLIAAVVMYNFHRWFPRGKIVFMAPTKPLVSQQIQACHDVMPIPQHDMAELQGNVAPSKRKALWATKRVFFCTPQSMQNDIERGNCDVRSFVCVV-----------------------------------------------------------------VDEAHRATGNYAYVTVIKAIAAKISGFRVLALSATPGAKFDV 202
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BLAST of mRNA_Ecto-sp13_S_contig6149.16840.1 vs. uniprot
Match: A0A1V9Z2F6_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2F6_9STRA)

HSP 1 Score: 221 bits (563), Expect = 4.180e-63
Identity = 120/245 (48.98%), Postives = 139/245 (56.73%), Query Frame = 1 
Query:    1 IDKEAAQTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVNTRFQKFCLDPLLTANVPPTAGTVLPAKIKSLRSSASPLGIVKTPCALETPAVSIEKTVGRFALCPTQAHRGTGNYAYVNVVREVAAATSHFRVLALSATPGSDIKV 735
            ID++ A  WIYP NYP+R YQ  I   ALF NTLV LPTGLGKTLIAAVVMYNYYRWFP GK+VF+APTKPLV+QQI AC+++M     D AELQG+V P +R QLW E+RVFFCTPQSM ND++   CD  +FVCVV                                                                   +AHR TGNYAYV VV+ +AA  S FRVLALSATPG+   V
Sbjct:  168 IDRDLATQWIYPSNYPVRTYQQTITRAALFHNTLVCLPTGLGKTLIAAVVMYNYYRWFPTGKIVFMAPTKPLVSQQIQACHNVMPFAHSDMAELQGNVAPTRRKQLWAEKRVFFCTPQSMQNDVELGNCDVTKFVCVV-----------------------------------------------------------------VDEAHRATGNYAYVMVVKAIAAKISGFRVLALSATPGAKFDV 347
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BLAST of mRNA_Ecto-sp13_S_contig6149.16840.1 vs. uniprot
Match: A0A3N0YYC0_ANAGA (Fanconi anemia group M protein n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0YYC0_ANAGA)

HSP 1 Score: 211 bits (538), Expect = 4.440e-63
Identity = 114/243 (46.91%), Postives = 133/243 (54.73%), Query Frame = 1 
Query:    4 DKEAAQTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVNTRFQKFCLDPLLTANVPPTAGTVLPAKIKSLRSSASPLGIVKTPCALETPAVSIEKTVGRFALCPTQAHRGTGNYAYVNVVREVAAATSHFRVLALSATPGSDIK 732
            D  A + WIYP NYP+RQYQLQI   AL +NTLV LPTGLGKT IAAV+MYNYYRWFP GK+VF+APTKPLVAQQI ACY +MG+P+Q  AEL GS    +R +LW  RRVFF TPQ M ND+    C  A+  CVV        +D                                                         +AH+ TGN+AY  VVRE+      FRVLALSATPG D+K
Sbjct:  156 DPSAGRVWIYPTNYPVRQYQLQICEAALLRNTLVCLPTGLGKTFIAAVLMYNYYRWFPAGKIVFMAPTKPLVAQQIQACYGVMGIPQQHMAELTGSTAAPQRRELWRSRRVFFLTPQVMVNDLSRNTCPAAQVKCVV--------ID---------------------------------------------------------EAHKATGNHAYCQVVRELCNQMQQFRVLALSATPGGDVK 333
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BLAST of mRNA_Ecto-sp13_S_contig6149.16840.1 vs. uniprot
Match: A0A6G0X567_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X567_9STRA)

HSP 1 Score: 223 bits (568), Expect = 6.190e-63
Identity = 119/245 (48.57%), Postives = 139/245 (56.73%), Query Frame = 1 
Query:    1 IDKEAAQTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVNTRFQKFCLDPLLTANVPPTAGTVLPAKIKSLRSSASPLGIVKTPCALETPAVSIEKTVGRFALCPTQAHRGTGNYAYVNVVREVAAATSHFRVLALSATPGSDIKV 735
            ID++ A  WIYP NYP+R YQ  I   ALF+NTLV LPTGLGKTLIAAVVMYN+YRWFP GK+VF+APTKPLV+QQI AC+D+M +P+ D AELQG+V P KR  LW  +RVFFCTPQS+ NDI+   CD   FVCVV                                                                   +AHR TGNYAYV  +R +AA  S FR+LALSATPGS   V
Sbjct:   26 IDRDLATQWIYPSNYPVRIYQQTIARAALFQNTLVCLPTGLGKTLIAAVVMYNFYRWFPRGKIVFMAPTKPLVSQQIQACHDVMPIPQHDMAELQGNVAPAKRKLLWSTKRVFFCTPQSLQNDIERGNCDVRSFVCVV-----------------------------------------------------------------VDEAHRATGNYAYVVAIRHIAAKISGFRILALSATPGSKFDV 205
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BLAST of mRNA_Ecto-sp13_S_contig6149.16840.1 vs. uniprot
Match: A0A3R7Y455_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7Y455_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.680e-62
Identity = 118/245 (48.16%), Postives = 140/245 (57.14%), Query Frame = 1 
Query:    1 IDKEAAQTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVNTRFQKFCLDPLLTANVPPTAGTVLPAKIKSLRSSASPLGIVKTPCALETPAVSIEKTVGRFALCPTQAHRGTGNYAYVNVVREVAAATSHFRVLALSATPGSDIKV 735
            ID++ A  WIYP NYP+R YQ  I   AL +NTLV LPTGLGKTLIAAVVM+N+YRWFP GK+VF+APTKPLV+QQI AC+D+M +P+ D AELQG+V P KR QLW  +RVFFCTPQS+ NDI+   CD   FVCVV                                                                   +AHR TGNYAYV V++ +AA  S FRVLALSATPG+   V
Sbjct:   14 IDRDLATQWIYPSNYPVRAYQQSISRAALLQNTLVCLPTGLGKTLIAAVVMFNFYRWFPRGKIVFMAPTKPLVSQQIQACHDVMPIPQSDMAELQGNVAPAKRKQLWATKRVFFCTPQSLQNDIERGNCDVRSFVCVV-----------------------------------------------------------------VDEAHRATGNYAYVVVIKAIAAKVSGFRVLALSATPGAKFDV 193
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BLAST of mRNA_Ecto-sp13_S_contig6149.16840.1 vs. uniprot
Match: A0A418BWH5_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BWH5_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.870e-62
Identity = 118/245 (48.16%), Postives = 140/245 (57.14%), Query Frame = 1 
Query:    1 IDKEAAQTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVNTRFQKFCLDPLLTANVPPTAGTVLPAKIKSLRSSASPLGIVKTPCALETPAVSIEKTVGRFALCPTQAHRGTGNYAYVNVVREVAAATSHFRVLALSATPGSDIKV 735
            ID++ A  WIYP NYP+R YQ  I   AL +NTLV LPTGLGKTLIAAVVM+N+YRWFP GK+VF+APTKPLV+QQI AC+D+M +P+ D AELQG+V P KR QLW  +RVFFCTPQS+ NDI+   CD   FVCVV                                                                   +AHR TGNYAYV V++ +AA  S FRVLALSATPG+   V
Sbjct:   14 IDRDLATQWIYPSNYPVRAYQQSISRAALLQNTLVCLPTGLGKTLIAAVVMFNFYRWFPRGKIVFMAPTKPLVSQQIQACHDVMPIPQSDMAELQGNVAPAKRKQLWATKRVFFCTPQSLQNDIERGNCDVRSFVCVV-----------------------------------------------------------------VDEAHRATGNYAYVVVIKAIAAKVSGFRVLALSATPGAKFDV 193
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BLAST of mRNA_Ecto-sp13_S_contig6149.16840.1 vs. uniprot
Match: A0A1V9ZRQ8_9STRA (DEAD/DEAH box RNA helicase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZRQ8_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.880e-62
Identity = 117/245 (47.76%), Postives = 141/245 (57.55%), Query Frame = 1 
Query:    1 IDKEAAQTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVVMYNYYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDPKKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVNTRFQKFCLDPLLTANVPPTAGTVLPAKIKSLRSSASPLGIVKTPCALETPAVSIEKTVGRFALCPTQAHRGTGNYAYVNVVREVAAATSHFRVLALSATPGSDIKV 735
            ID++ A  WIYP NYPIR YQ  I   ALF NTLV LPTGLGKTLIAAVV+YN+YRWFP+GK+VF+APTKPLV+QQI AC+D+M +P+ D A+LQG+V P +R QLW ++RVFFCTPQS+ NDI    C+ + FVC+V                                                                   +AHR  GNYAYV VV+ +AA  S FRVLALSATPGS   V
Sbjct:  145 IDRDLASNWIYPSNYPIRTYQQTITRAALFHNTLVCLPTGLGKTLIAAVVIYNFYRWFPQGKIVFMAPTKPLVSQQIQACHDVMPIPQADMAKLQGNVPPARRKQLWAQKRVFFCTPQSLQNDIDRGNCEVSSFVCIV-----------------------------------------------------------------VDEAHRAVGNYAYVMVVKAIAAKISGFRVLALSATPGSKFDV 324
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6149.16840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT28_9PHAE1.550e-10471.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP48_ECTSI4.280e-9870.08DEAD box helicase similar to CG7922-PA n=1 Tax=Ect... [more]
A0A397EJI9_9STRA3.480e-7954.44Helicase ATP-binding domain-containing protein (Fr... [more]
A0A418AL25_9STRA2.600e-6948.16Helicase ATP-binding domain-containing protein n=1... [more]
A0A1V9Z2F6_9STRA4.180e-6348.98DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna... [more]
A0A3N0YYC0_ANAGA4.440e-6346.91Fanconi anemia group M protein n=1 Tax=Anabarilius... [more]
A0A6G0X567_9STRA6.190e-6348.57Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A3R7Y455_9STRA2.680e-6248.16Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A418BWH5_9STRA2.870e-6248.16Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A1V9ZRQ8_9STRA2.880e-6247.76DEAD/DEAH box RNA helicase (Fragment) n=1 Tax=Thra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6149contigEcto-sp13_S_contig6149:2341..4504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score325.5
Seed ortholog evalue2.3e-86
Seed eggNOG ortholog2880.D7FP48
Preferred nameFANCM
Model size765
KEGG koko:K10896
KEGG Pathwayko03460,map03460
KEGG ModuleM00413
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000280,GO:0000712,GO:0000724,GO:0000725,GO:0003674,GO:0003678,GO:0003682,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0031297,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0036297,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043240,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045003,GO:0045005,GO:0045132,GO:0045910,GO:0045934,GO:0045950,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071821,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1903046
Exons4
EggNOG free text desc.helicase activity
EggNOG OGsCOG1111@1,COG5141@1,KOG0354@2759,KOG0955@2759
Cds size765
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.9872315-CDS-Ecto-sp13_S_contig6149:2340..25101681463856.9872315-CDS-Ecto-sp13_S_contig6149:2340..2510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6149 2341..2510 +
1681463856.9981778-CDS-Ecto-sp13_S_contig6149:3277..35211681463856.9981778-CDS-Ecto-sp13_S_contig6149:3277..3521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6149 3278..3521 +
1681463857.0083916-CDS-Ecto-sp13_S_contig6149:4037..41461681463857.0083916-CDS-Ecto-sp13_S_contig6149:4037..4146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6149 4038..4146 +
1681463857.0193226-CDS-Ecto-sp13_S_contig6149:4262..45041681463857.0193226-CDS-Ecto-sp13_S_contig6149:4262..4504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6149 4263..4504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6149.16840.1prot_Ecto-sp13_S_contig6149.16840.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6149 2341..4504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6149.16840.1

>prot_Ecto-sp13_S_contig6149.16840.1 ID=prot_Ecto-sp13_S_contig6149.16840.1|Name=mRNA_Ecto-sp13_S_contig6149.16840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
IDKEAAQTWIYPVNYPIRQYQLQIVTQALFKNTLVALPTGLGKTLIAAVV
MYNYYRWFPEGKVVFLAPTKPLVAQQISACYDIMGVPEQDTAELQGSVDP
KKRAQLWDERRVFFCTPQSMANDIKHKRCDPARFVCVVNTRFQKFCLDPL
LTANVPPTAGTVLPAKIKSLRSSASPLGIVKTPCALETPAVSIEKTVGRF
ALCPTQAHRGTGNYAYVNVVREVAAATSHFRVLALSATPGSDIKVRLSSL
LLLRL
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mRNA from alignment at Ecto-sp13_S_contig6149:2341..4504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6149.16840.1 ID=mRNA_Ecto-sp13_S_contig6149.16840.1|Name=mRNA_Ecto-sp13_S_contig6149.16840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2164bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6149:2341..4504+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATAGACAAGGAGGCCGCGCAAACATGGATCTACCCTGTGAACTACCCCAT
CCGCCAGTACCAGCTGCAGATCGTGACCCAGGCCCTGTTCAAGAACACCC
TCGTGGCGCTGCCGACGGGCCTCGGCAAGACCCTGATCGCCGCCGTCGTC
ATGTACAACTACTACCGGTGGTGAGTGCGGAAGTCTGGCGGTTCCCCGGG
TTTGTCGTAATCTGCTACGAAGCCATGCACGCTGTTTGGCCCCTTACGTT
GTATCGACTTGCTGTCGGGGCAGATTCGTTCTTCTTGTCCTAATCTGTAG
AGGACCTCTGGGCATTTGCAGTGAGGGAGCCGTGGGTTAAGAACAAGCGC
GGCGATATGAGGGGCAACTTGTTTTGGTTGTTATCGCAGTTGGTGTTCGG
CTGAAGCAGGCATGATTCTCTAGTCGTTTGTTCGTCGAAGCGCGTGCTCG
AGGGCGGTGCTCGTCATTCCGATCTTTGGTATACGGCTGTTCCATGACTG
GAGACGAACCCGCGATACGCTAGATGCACTGAAATAACGTTGGCGCTGCG
GTGCGCTATGTCTGGTGTGTCGGCTGCACCCAAGACGAGTTTTCTCTCTT
CCGGACCGACCAAGAAGGCATGACATGCACCTGTTAAACCATCTCGAGCT
TCGCGGGCCATGGTCTATCAGATCAGGCCTTGCAACCGAGGCAAGCAGAG
ACGACCAGAACCCCAACCGCCTCCACAAGGGTACTTTCCCCTGTCTCTTG
AGGCTACGAGAATCCCTCACCAGTCAGTAACCAGCCGGTTTGCCTCCACT
CACTGTGAAGACGGCAGCACATCCCCTTCGACTGCTATGGTTATATCTCC
AAGGTGCAGTCTTTCTGTGCTTTTTTGTGTATGTTTTCTAAAGTGTCTAT
CGCCCCTAACCCCGTGTGCCACGAACGCTCGGGGTAGGTTTCCGGAGGGG
AAGGTCGTGTTCCTGGCCCCAACCAAGCCTCTCGTGGCGCAGCAGATCAG
CGCTTGCTACGACATCATGGGCGTCCCGGAGCAGGACACCGCAGAGCTCC
AGGGGTCGGTGGACCCGAAGAAGAGGGCCCAGCTGTGGGACGAGCGGAGG
GTCTTCTTCTGCACCCCGCAGAGCATGGCCAACGACATCAAGCACAAGCG
CTGCGACCCCGCGCGGTTTGTCTGCGTCGTCGTGGACGAAGTGAGAGGGG
GTTGCTCTCCTGTTGGCATGCCGTAGTCGTTTGGTACATTGACCTCGTAT
CCCTACAAAACCGGCACGGAGCACGCTGGGGGGAATTGGGGCATCACGTT
TGGTTGCTGTTTTTTTTTGCCTCCCTTCTCGTACGTTTCGTCGGCCCGAT
GAGCGTGAGGACATACGAAGTGAGTTTCTGAGAGGCCGGGGGGAGGAGAG
ATCGATGACAAAAGCAATTCGTCCGGACAAGACCCCGATAGTGCTTGATG
CCTGTGTGGGGTGCTCAACACCTCTGTCAGCTGCCCGTGCTTCGTCTGCC
CAGTGTACCGGTTGGTTCACGGTGCCGTATCGCGTAGAGAAACGTGAGCA
GGCAGTCACAGTACGTATCCTCTCTGTTCCCTCTGTATCTGAGAAGCCTT
GTACACAATTCCCTCGAACACCCACACACTTCCACTATCCAACGACCATA
ACGACCATAAAGTGCCCCTCCAAAAAAATTATCTAAAAATTATGTAGAAC
ACTCGATTTCAGAAATTCTGTTTGGACCCATTGCTGACGGCGAATGTCCC
CCCCACGGCGGGGACGGTCCTCCCTGCAAAAATTAAGTCCCTGCGGTCAT
CCGCTTGTGTGTTGGAACCGCTTTGTGCATTTTAAAAAACTTGTGCACTG
GAGACCCCTTTGTGTGTTGGAAACCCCCAATGTGTACATTGGAACCCCCT
TTGTGCATTGGAAACGCCTAAGCCCCCTTGGGCATTGTAAAAACCCCTTG
TGCACTGGAAACGCCTGCCGTGTCCATTGAAAAAACCGTCGGTCGGTTCG
CTTTGTGCCCGACGCAGGCGCATCGGGGCACCGGGAACTACGCGTACGTG
AACGTTGTCAGAGAAGTTGCCGCCGCGACGTCGCACTTCCGGGTGCTGGC
GTTGAGCGCGACTCCGGGAAGCGACATCAAGGTGCGCCTTTCGTCGTTGC
TGCTGTTGCGGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6149:2341..4504+

>mRNA_Ecto-sp13_S_contig6149.16840.1 ID=mRNA_Ecto-sp13_S_contig6149.16840.1|Name=mRNA_Ecto-sp13_S_contig6149.16840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6149:2341..4504+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATAGACAAGGAGGCCGCGCAAACATGGATCTACCCTGTGAACTACCCCAT
CCGCCAGTACCAGCTGCAGATCGTGACCCAGGCCCTGTTCAAGAACACCC
TCGTGGCGCTGCCGACGGGCCTCGGCAAGACCCTGATCGCCGCCGTCGTC
ATGTACAACTACTACCGGTGGTTTCCGGAGGGGAAGGTCGTGTTCCTGGC
CCCAACCAAGCCTCTCGTGGCGCAGCAGATCAGCGCTTGCTACGACATCA
TGGGCGTCCCGGAGCAGGACACCGCAGAGCTCCAGGGGTCGGTGGACCCG
AAGAAGAGGGCCCAGCTGTGGGACGAGCGGAGGGTCTTCTTCTGCACCCC
GCAGAGCATGGCCAACGACATCAAGCACAAGCGCTGCGACCCCGCGCGGT
TTGTCTGCGTCGTCAACACTCGATTTCAGAAATTCTGTTTGGACCCATTG
CTGACGGCGAATGTCCCCCCCACGGCGGGGACGGTCCTCCCTGCAAAAAT
TAAGTCCCTGCGGTCATCCGCTTCCCCCTTGGGCATTGTAAAAACCCCTT
GTGCACTGGAAACGCCTGCCGTGTCCATTGAAAAAACCGTCGGTCGGTTC
GCTTTGTGCCCGACGCAGGCGCATCGGGGCACCGGGAACTACGCGTACGT
GAACGTTGTCAGAGAAGTTGCCGCCGCGACGTCGCACTTCCGGGTGCTGG
CGTTGAGCGCGACTCCGGGAAGCGACATCAAGGTGCGCCTTTCGTCGTTG
CTGCTGTTGCGGCTG
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