mRNA_Ecto-sp13_S_contig6148.16838.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6148.16838.1
Unique NamemRNA_Ecto-sp13_S_contig6148.16838.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6148.16838.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.890e-63
Identity = 115/131 (87.79%), Postives = 116/131 (88.55%), Query Frame = 1 
Query:   16 RPLTGAKTDGGSGGNGAWVPPSEFPPGHSEAPAA-ATPAGVEGSNVGPAAAEGVAPEFLATSGPLKIRDEADPFSMELGVTEKGHIVRVLERSGLWARVSYRGREDGWMLTANKRGPILVPSEDQASAARE 405
            RPLTGAKTDGGSGGNGAW PPSEFPPGHSE PA  A PA VEGS VGPAAAEGV PEFLATSG     DEADPFSMELGVTEKGHIVRVLE+SGLWARVSYRGREDGWMLTANKRGP LVP EDQASAARE
Sbjct:  319 RPLTGAKTDGGSGGNGAWAPPSEFPPGHSEEPAPPAPPARVEGSKVGPAAAEGVGPEFLATSG-----DEADPFSMELGVTEKGHIVRVLEKSGLWARVSYRGREDGWMLTANKRGPTLVPPEDQASAARE 444
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BLAST of mRNA_Ecto-sp13_S_contig6148.16838.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 4.640e-44
Identity = 103/217 (47.47%), Postives = 109/217 (50.23%), Query Frame = 1 
Query:   19 PLTGAKTDGGSGGNGAWVPPSEFPPGHSEAPAAATPAGVEGSNVGPAAAEGVAPEFLATSGPL----------------------------------------------------------------------------------------KIRDEADPFSMELGVTEKGHIVRVLERSGLWARVSYRGREDGWMLTANKRGPILVPSEDQASAARE 405
            PLTGAK DGGSGGNGAW PPSEFPPGHS+A      AGVEGS VGPAAAEGV PEFLATSGPL                                                                                        K+R+EADPFSM+LG   KG IV+VLE S LW RV YRGREDGW+LTANKRGP LVPSEDQASAA E
Sbjct:  763 PLTGAKADGGSGGNGAWAPPSEFPPGHSKAXXXXA-AGVEGSKVGPAAAEGVGPEFLATSGPLTGAKQTPTAPEVSGPGAAAGEDRPLTGGGKGAWVPPSEFPPGHEGGAPSXXXXXXXXXXXXXXXXXXXXXXAGDEAVSAEFFTALGFVKVREEADPFSMDLGSVRKGDIVKVLETSKLWVRVCYRGREDGWVLTANKRGPTLVPSEDQASAAGE 978
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6148.16838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4T0_9PHAE1.890e-6387.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7L6_ECTSI4.640e-4447.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6148contigEcto-sp13_S_contig6148:2908..3862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size406
Hectar predicted targeting categoryother localisation
Exons3
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.9337473-CDS-Ecto-sp13_S_contig6148:2907..30271681463856.9337473-CDS-Ecto-sp13_S_contig6148:2907..3027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6148 2908..3027 -
1681463856.944841-CDS-Ecto-sp13_S_contig6148:3328..34131681463856.944841-CDS-Ecto-sp13_S_contig6148:3328..3413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6148 3329..3413 -
1681463856.956964-CDS-Ecto-sp13_S_contig6148:3662..38621681463856.956964-CDS-Ecto-sp13_S_contig6148:3662..3862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6148 3663..3862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6148.16838.1prot_Ecto-sp13_S_contig6148.16838.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6148 2908..3862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6148.16838.1

>prot_Ecto-sp13_S_contig6148.16838.1 ID=prot_Ecto-sp13_S_contig6148.16838.1|Name=mRNA_Ecto-sp13_S_contig6148.16838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
PDDDDRPLTGAKTDGGSGGNGAWVPPSEFPPGHSEAPAAATPAGVEGSNV
GPAAAEGVAPEFLATSGPLKIRDEADPFSMELGVTEKGHIVRVLERSGLW
ARVSYRGREDGWMLTANKRGPILVPSEDQASAARE
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mRNA from alignment at Ecto-sp13_S_contig6148:2908..3862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6148.16838.1 ID=mRNA_Ecto-sp13_S_contig6148.16838.1|Name=mRNA_Ecto-sp13_S_contig6148.16838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=955bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6148:2908..3862- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGACGATGACGATCGTCCGCTGACAGGCGCGAAAACGGATGGCGGCAG
CGGTGGAAACGGGGCGTGGGTACCGCCGAGCGAGTTCCCGCCGGGTCACA
GTGAAGCGCCGGCGGCGGCGACGCCGGCGGGGGTGGAAGGCTCGAACGTC
GGGCCTGCAGCCGCAGAGGGCGTGGCTCCGGAGTTTTTGGCGACGTCGGG
GTGAGCTAGCTTGGATGTAATCAAGAGACGCGTGTTGGTTTGTGCAGAGG
TTGTTGTTCTGCAGCGACAAACGGGCCGTCGTGTCGCGAGGACGCCCGCG
AACGGGTCGCGCAATAGTACACGATGCGCGGTGTTGTGTTTTTTGGTGCT
TGGGTCTATTCATCGTGTCGTCCCTTCTGGACTGCTCTTCGATCGCCTGA
TCGCGGCCTTGTTTTCATTGTCGTTTTCTTGTTCGCCCCCTCCCCCCAGG
CCGCTCAAGATCAGGGACGAAGCGGATCCGTTCTCGATGGAGCTAGGCGT
GACCGAAAAGGGGCACATCGTCCGGGTCCTAGAGGTGAGAAATCAGCGCG
GCCAACGGCGGTTTGATTTGCCGCCCAATTGTGCGGGCTAAGATGACACG
CTCAAGCCACCGTTGCACGGGCTGGACCTCTTCTGGGCATTGAAGGAGCG
ACAACCCCACCCCGCCCCCCGGTCATCGACCCTGAAGTTTGGTCAGTCGA
TCCCAGGGAGTTGCAGTTCCCGCCGATACCTGTCGAAGTCTTTCCCTAGA
ACTACCGTTCAGATCCTTGTGCTCTGCTCCATGTAACGCTTGGCACCGAT
TTTGCGGCGTGGTGCGCTTGGTCTCTTGGTCCCAGAGATCTGGCTTGTGG
GCGCGGGTGTCGTACCGCGGTCGAGAGGACGGCTGGATGCTCACCGCCAA
CAAGCGAGGCCCCATCCTGGTCCCTTCGGAAGACCAAGCCTCGGCCGCAA
GGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6148:2908..3862-

>mRNA_Ecto-sp13_S_contig6148.16838.1 ID=mRNA_Ecto-sp13_S_contig6148.16838.1|Name=mRNA_Ecto-sp13_S_contig6148.16838.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6148:2908..3862- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGACGATGACGATCGTCCGCTGACAGGCGCGAAAACGGATGGCGGCAG
CGGTGGAAACGGGGCGTGGGTACCGCCGAGCGAGTTCCCGCCGGGTCACA
GTGAAGCGCCGGCGGCGGCGACGCCGGCGGGGGTGGAAGGCTCGAACGTC
GGGCCTGCAGCCGCAGAGGGCGTGGCTCCGGAGTTTTTGGCGACGTCGGG
GCCGCTCAAGATCAGGGACGAAGCGGATCCGTTCTCGATGGAGCTAGGCG
TGACCGAAAAGGGGCACATCGTCCGGGTCCTAGAGAGATCTGGCTTGTGG
GCGCGGGTGTCGTACCGCGGTCGAGAGGACGGCTGGATGCTCACCGCCAA
CAAGCGAGGCCCCATCCTGGTCCCTTCGGAAGACCAAGCCTCGGCCGCAA
GGGAG
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