mRNA_Ecto-sp13_S_contig6148.16837.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6148.16837.1
Unique NamemRNA_Ecto-sp13_S_contig6148.16837.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6148.16837.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 1.130e-88
Identity = 151/162 (93.21%), Postives = 152/162 (93.83%), Query Frame = 1 
Query:    1 AFASSSGGALPEDPSDRPLTGAKPPPAAPTAATGDSEXXXXXGGGKGAWVPPSEFPPGEEDGPVRRGDGGDALVKKASAGSVVDAAGQEKDSAGDETVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLETSKLWVRVCYRGREDGWVLTANKRGPT 486
            AFASSSGGALPEDP+DRPLTGAKPPPAA TAATGDSE     GGGKGAWVPPSEFPPGEEDGPV  GDGGD LVKKASAGSVVDAAGQEKDSAGDE VSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLETSKLWVRVCYRGREDGWVLTANKRGPT
Sbjct:  624 AFASSSGGALPEDPADRPLTGAKPPPAASTAATGDSEDRPLTGGGKGAWVPPSEFPPGEEDGPVGSGDGGDVLVKKASAGSVVDAAGQEKDSAGDEAVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLETSKLWVRVCYRGREDGWVLTANKRGPT 785
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BLAST of mRNA_Ecto-sp13_S_contig6148.16837.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 8.930e-85
Identity = 145/162 (89.51%), Postives = 148/162 (91.36%), Query Frame = 1 
Query:    1 AFASSSGGALPEDPSDRPLTGAKPPPAAPTAATGDSEXXXXXGGGKGAWVPPSEFPPGEEDGPVRRGDGGDALVKKASAGSVVDAAGQEKDSAGDETVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLETSKLWVRVCYRGREDGWVLTANKRGPT 486
            AFA++ GGALPEDPSDRPLTGAKPPPAAPTAATG SE     GGGKGAWVPPSEFPPG+EDGPV RGDGGDALVKKASA SVVDA GQ  DSAGDE VSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLE SKLWVRVCYRGREDGWVLTANKRGPT
Sbjct:  985 AFAANGGGALPEDPSDRPLTGAKPPPAAPTAATGASEDRPLTGGGKGAWVPPSEFPPGQEDGPVSRGDGGDALVKKASAESVVDAPGQGNDSAGDEAVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLEASKLWVRVCYRGREDGWVLTANKRGPT 1146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6148.16837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4T0_9PHAE1.130e-8893.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7L6_ECTSI8.930e-8589.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6148contigEcto-sp13_S_contig6148:48..1301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size489
Hectar predicted targeting categoryother localisation
Exons3
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.8828309-CDS-Ecto-sp13_S_contig6148:49..1301681463856.8828309-CDS-Ecto-sp13_S_contig6148:49..130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6148 50..130 -
1681463856.8931768-CDS-Ecto-sp13_S_contig6148:532..6171681463856.8931768-CDS-Ecto-sp13_S_contig6148:532..617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6148 533..617 -
1681463856.904517-CDS-Ecto-sp13_S_contig6148:981..13011681463856.904517-CDS-Ecto-sp13_S_contig6148:981..1301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6148 982..1301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6148.16837.1prot_Ecto-sp13_S_contig6148.16837.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6148 50..1301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6148.16837.1

>prot_Ecto-sp13_S_contig6148.16837.1 ID=prot_Ecto-sp13_S_contig6148.16837.1|Name=mRNA_Ecto-sp13_S_contig6148.16837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
AFASSSGGALPEDPSDRPLTGAKPPPAAPTAATGDSEDRPLTGGGKGAWV
PPSEFPPGEEDGPVRRGDGGDALVKKASAGSVVDAAGQEKDSAGDETVSS
EYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLETSKLWVRVCYRGRED
GWVLTANKRGPT
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mRNA from alignment at Ecto-sp13_S_contig6148:48..1301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6148.16837.1 ID=mRNA_Ecto-sp13_S_contig6148.16837.1|Name=mRNA_Ecto-sp13_S_contig6148.16837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1254bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6148:48..1301- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCGCATCAAGTAGCGGCGGGGCTCTACCGGAGGATCCGTCCGATAG
ACCCCTGACGGGCGCCAAGCCACCTCCCGCCGCGCCTACGGCGGCGACAG
GAGACAGCGAGGATCGGCCGTTGACTGGCGGCGGGAAGGGTGCGTGGGTA
CCGCCGAGCGAGTTCCCGCCGGGCGAAGAAGATGGACCTGTTCGCCGTGG
CGACGGCGGGGACGCTCTCGTCAAGAAGGCATCGGCAGGAAGTGTCGTCG
ACGCAGCGGGGCAGGAGAAGGATTCGGCTGGGGATGAGACTGTGTCTTCG
GAGTACATGACGGCGTTGGGGTGAGTTTGATGTTCGACGTGTTCACTTTT
GTTCTACCGGTCATGCCGGTAGCAGTCCGTACGTCCAGACGAAAGCGTTG
TGGTTGAAGGGAGGGGACCGTGGGGGGGAAAGTCAGGCCAGTCTCCTGGC
ATGGAGGGTGAGATCGTACGGTATTTTGCATCAAAACCCCCCCGTCAGCC
TTCCTCTTTTGTTTTTTGGGTGTATGTGTAGGACTTGTCCCCCGTGACCT
TTCATCGATACCACCGAACGAGATTGTTCTGCAGGCCGAAGTCCAATTTC
GGCGTGGCGCAGGGAGCTGTTTTGACTTGCGCCTCACCCTGCCTAGATGT
ACCCCCTGATTTTGCTAATAACACTCACAACAAGGTTCGTGAAAGTACGG
GAAGAGGCGGACCCTTTCTCGATGGACCTGGGGAGCGTGAAGAAAGGAGA
CATCGTCAAGGTGCTGGAGGTACGTGCCAGGAGCATGAAGACCCCATATG
GTGGAGCTGTCGTTGTGCGGAAGTGTACCTAGTGCTGTTGGGTTTGTTCC
TTTCCCCCGGGTAGTGTTGGCTGTGTGGCGCGCGTGTTTTGTGGCGTCTG
GCGTGTTTTGGGCTCACGGTCGTCGTGCCTATTTTTGGGCGTTGGACCTT
GTCGCAAGACGGCGATTTGTCCTGGTGGGGTTTGGTGTGGTGGGACGATG
TTCGGTGGCTGATGCGAGCGAAGCGCTTGCGATGGTAATGTCGAGTGTAG
CAGCGCGCACGGCAAGAGGGTGAGGTATCCATCATATCCAAGGATGAGCA
TAGGCGCATTCATCGCCATTATCTCTACTCTTTGATGTAATGTGCTCTGT
TGCTGCTGCTGCTCTGTGCAGACGTCCAAGCTGTGGGTGCGTGTGTGCTA
CCGCGGTCGAGAGGACGGCTGGGTCCTCACCGCCAATAAGCGAGGCCCGA
CCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6148:48..1301-

>mRNA_Ecto-sp13_S_contig6148.16837.1 ID=mRNA_Ecto-sp13_S_contig6148.16837.1|Name=mRNA_Ecto-sp13_S_contig6148.16837.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6148:48..1301- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCGCATCAAGTAGCGGCGGGGCTCTACCGGAGGATCCGTCCGATAG
ACCCCTGACGGGCGCCAAGCCACCTCCCGCCGCGCCTACGGCGGCGACAG
GAGACAGCGAGGATCGGCCGTTGACTGGCGGCGGGAAGGGTGCGTGGGTA
CCGCCGAGCGAGTTCCCGCCGGGCGAAGAAGATGGACCTGTTCGCCGTGG
CGACGGCGGGGACGCTCTCGTCAAGAAGGCATCGGCAGGAAGTGTCGTCG
ACGCAGCGGGGCAGGAGAAGGATTCGGCTGGGGATGAGACTGTGTCTTCG
GAGTACATGACGGCGTTGGGGTTCGTGAAAGTACGGGAAGAGGCGGACCC
TTTCTCGATGGACCTGGGGAGCGTGAAGAAAGGAGACATCGTCAAGGTGC
TGGAGACGTCCAAGCTGTGGGTGCGTGTGTGCTACCGCGGTCGAGAGGAC
GGCTGGGTCCTCACCGCCAATAAGCGAGGCCCGACC
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