mRNA_Ecto-sp13_S_contig6148.16839.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6148.16839.1
Unique NamemRNA_Ecto-sp13_S_contig6148.16839.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6148.16839.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 2.420e-55
Identity = 97/101 (96.04%), Postives = 100/101 (99.01%), Query Frame = 2 
Query:   26 SRYMVCARQVTVREYPEFYAQDVGVVPEGGIVRVFEEKEEINEAKQTKDVWVRGQSPYTAAAAGSRTGLIEGWLLAFTTKRGSMVAEAPNALAAQHAFEKQ 328
            +RYMVCARQVTVREYPEFYAQDVGVVPEGGIVRVFEEKEEINEAKQTKDVWVRGQSP TAAAAGSRTGL+EGWLLAF+TKRGSMVAEAPNALAAQHAFEKQ
Sbjct:  360 NRYMVCARQVTVREYPEFYAQDVGVVPEGGIVRVFEEKEEINEAKQTKDVWVRGQSPNTAAAAGSRTGLVEGWLLAFSTKRGSMVAEAPNALAAQHAFEKQ 460
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6148.16839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7L6_ECTSI2.420e-5596.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6148contigEcto-sp13_S_contig6148:6812..7731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size345
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.8445246-CDS-Ecto-sp13_S_contig6148:6811..70141681463856.8445246-CDS-Ecto-sp13_S_contig6148:6811..7014Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6148 6812..7014 -
1681463856.8554633-CDS-Ecto-sp13_S_contig6148:7589..77311681463856.8554633-CDS-Ecto-sp13_S_contig6148:7589..7731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6148 7590..7731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6148.16839.1prot_Ecto-sp13_S_contig6148.16839.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6148 6812..7731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6148.16839.1

>prot_Ecto-sp13_S_contig6148.16839.1 ID=prot_Ecto-sp13_S_contig6148.16839.1|Name=mRNA_Ecto-sp13_S_contig6148.16839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MCSWADSYEQIYGVRQTSDRPRVPGVLRAGCRRRPGGGDSAGLRGERGDK
RGEADQRRLGPRTIALHGCCRRLPHGSHRRMAASLYHQAGVYGSRSAERA
GCPTRVRETGAANI*
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mRNA from alignment at Ecto-sp13_S_contig6148:6812..7731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6148.16839.1 ID=mRNA_Ecto-sp13_S_contig6148.16839.1|Name=mRNA_Ecto-sp13_S_contig6148.16839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=920bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6148:6812..7731- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTCATGGGCCGACTCCTATGAGCAGATATATGGTGTGCGCCAGAC
AAGTGACCGTCCGAGAGTACCCGGAGTTCTACGCGCAGGATGTCGGCGTC
GTCCCGGAGGGGGGGATAGTGCGGGTCTTCGAGGAGAAAGAGGTGGAGAA
ACCGAAGCTTGTTGCCGTTGCTTTGGTCGTTTGGGCTGTTTAGAGCAGTG
GCGGTTGTATTGTTACTGGTGATGTCGCTAGCCTTGACGGCACGGTGCTG
ATAGCGACCAAGATGTAGACGAGCAGAAAGCGTGTGGGTGCCGAAGACGG
CAGCTTTGAAGCCTTCTGGTCAAGAGCTCTCCGAAAAGATGTCGTTTCGT
TTCAGCATCCTCTTAGTCGTGGAGTAATCGAACTTTGAAAATCAGTCTAG
GCTGTGTGTATATCTTGCGTCCGCGGTCACTGCTGTCTGTACCCTAACCG
TGACGATTTGAAGGAGACGGCACCTTCCATCCCCTGGTATGGCCGTGTAC
CAGCGCACGCCTTTCACACCGTGTGGAACGCTCGCTTTCCCTTCCGCACG
GACGTTTGCACTTTTGATGCGCGCCCGTTCTTCGTTTTCATTGTGTTTTT
TTCAGGAGATGAACGTCGGTAATTTTTTCTGCAGATCAGTGTCACTTTTT
TTTCGGAGTTTATCGTCGTTTTTTTTTCAGCAGATAAACGTCGTTTTTGT
GTGTGTGCTTTTTTCAGGAGATAAACGAGGCGAAGCAGACCAAAGACGTT
TGGGTCCGCGGACAATCGCCTTACACGGCTGCTGCCGCCGGCTCCCGCAC
GGGTCTCATAGAAGGATGGCTGCTAGCCTTTACCACCAAGCGGGGGTCTA
TGGTAGCCGAAGCGCCGAACGCGCTGGCTGCCCAACACGCGTTCGAGAAA
CAGGTGCGGCCAATATATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6148:6812..7731-

>mRNA_Ecto-sp13_S_contig6148.16839.1 ID=mRNA_Ecto-sp13_S_contig6148.16839.1|Name=mRNA_Ecto-sp13_S_contig6148.16839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6148:6812..7731- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTCATGGGCCGACTCCTATGAGCAGATATATGGTGTGCGCCAGAC
AAGTGACCGTCCGAGAGTACCCGGAGTTCTACGCGCAGGATGTCGGCGTC
GTCCCGGAGGGGGGGATAGTGCGGGTCTTCGAGGAGAAAGAGGAGATAAA
CGAGGCGAAGCAGACCAAAGACGTTTGGGTCCGCGGACAATCGCCTTACA
CGGCTGCTGCCGCCGGCTCCCGCACGGGTCTCATAGAAGGATGGCTGCTA
GCCTTTACCACCAAGCGGGGGTCTATGGTAGCCGAAGCGCCGAACGCGCT
GGCTGCCCAACACGCGTTCGAGAAACAGGTGCGGCCAATATATAG
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