mRNA_Ecto-sp13_S_contig6146.16836.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6146.16836.1
Unique NamemRNA_Ecto-sp13_S_contig6146.16836.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: D8LDD4_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD4_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 5.740e-91
Identity = 149/160 (93.12%), Postives = 151/160 (94.38%), Query Frame = 1
Query:    4 DMVLLEIGGKDVTGAMFDLVMDALVAAPAGEPIDLVFRDPSAAPAXXXXXXXXXX----IGVPCELTVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK 471
            DM+LLEIGGKDVT AMFDLVMD LVAAPAG PIDLVFRDPSAA  XXXXXXXXXX    +GVPCELTVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK
Sbjct:  101 DMILLEIGGKDVTSAMFDLVMDTLVAAPAGVPIDLVFRDPSAAAXXXXXXXXXXXPAVAMGVPCELTVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK 260          
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A836CP36_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP36_9STRA)

HSP 1 Score: 143 bits (361), Expect = 7.190e-40
Identity = 78/162 (48.15%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    7 MVLLEIGGKDVTGAMFDLVMDALVAAPAGEPIDLVFR---DPSAAPAXXXXXXXXXXIGVPCELTV-----GGVTLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPK 468
            MVL+ + G D T   FD +MD L+ A   +PI L F    D    P              PCEL V       + LKA+ GDNLRK L+AGKV +Y+ +  MTNCNG GQCGTCV +VV  +GW PRS++EA KLKGRP+S RL+CQT+++GDA I  +P K
Sbjct:   85 MVLVSLNGIDCTTKDFDTIMDMLIGATDSQPIQLSFSLEVDDEQIPQPIKTG--------PCELHVLLPKGETMVLKARNGDNLRKVLMAGKVSIYEGLAVMTNCNGAGQCGTCVTKVV-GQGWSPRSDYEANKLKGRPQSHRLACQTLVEGDAVITVRPAK 237          
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A7S3YA98_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA98_HETAK)

HSP 1 Score: 117 bits (292), Expect = 2.720e-29
Identity = 72/168 (42.86%), Postives = 88/168 (52.38%), Query Frame = 1
Query:    7 MVLLEIGGKDVTGAMFDLVMDALVAAPAGEPIDLVFRDPSAA----PAXXXXXXXXXXIGVPCE-----LTVGGV---TLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDP-RSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK 471
            M LL + G+D T   FD VMD L+AA     + L    P        A          +  P E     + + G     L  + G NLRK LLA  VEVY  + K+TNCNGGGQCGTC V+VV  EG  P RSEWE GKL+GRP S RL+C   + G  ++  KP KK
Sbjct:   96 MRLLAVNGQDCTSCTFDEVMDKLIAADGEVQVTLQSSSPKQTLVVPDAIQPLEAPKEKVEPPPEGPFEVIVLNGEEKRVLTIQAGANLRKELLANGVEVYAGMAKLTNCNGGGQCGTCAVEVVAGEGLGPARSEWEEGKLRGRPGSHRLACMNTVAGPVSVRVKPSKK 263          
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A4D9D0U6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0U6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.070e-26
Identity = 53/94 (56.38%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  208 LKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEA-----GKLKGRPESQRLSCQTVIQ-GDATIVTKPPKK 471
            ++AK G NLRKTL A K++VYD++GKMTNCNG GQCGTCVV+V     W  RSE+EA     GK  G  +  RL+CQT ++ G+AT+V +PPKK
Sbjct:   88 IEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPS-WGLRSEYEADKILKGKKIGEGQEYRLACQTTVERGEATVVVRPPKK 180          
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A7S1XJK9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJK9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.530e-24
Identity = 67/174 (38.51%), Postives = 92/174 (52.87%), Query Frame = 1
Query:    7 MVLLEIGGKDVTGAMFDLVMDALVAAP--------------AGEPIDLVFRDPSAA----PAXXXXXXXXXXIGVPCELTVGGVT-LKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVV-EAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQG--DATIVTKP 462
            M LLE+ G+DV  A FD  MDAL+ AP              A E ++     P+A     PA           G P  + V G T +  + G+ LR  L   KV+VYD++GK+TNCNG GQCGTC V V+ E +    R++ E  KL  +P++ RL+CQ V++G  +  I TKP
Sbjct:  110 MALLEVAGQDVGAATFDEAMDALIGAPSVVELVLQGEAPAPAAEQVEPEEEVPAAVAEDVPAPAADDAEDVDDGRPASVVVDGSTKITVERGEILRNALRGSKVDVYDLMGKVTNCNGAGQCGTCAVAVLGETDALSERTDAELRKLGKKPDNWRLACQVVVEGGGELEIQTKP 283          
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A098TL89_9CYAN (Iron ABC transporter substrate-binding protein n=1 Tax=Neosynechococcus sphagnicola sy1 TaxID=1497020 RepID=A0A098TL89_9CYAN)

HSP 1 Score: 98.6 bits (244), Expect = 5.990e-24
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1
Query:  199 GVTLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVE-AEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKP 462
            G  + A  G NLR   L   V++Y  VGKMTNC G GQCGTCVV++VE AE   PRS++E  KLK +P++ RL+CQ V+QG  T+ TKP
Sbjct:   10 GREVVAADGANLRLQALENGVDIYTFVGKMTNCGGYGQCGTCVVEIVEGAENLSPRSDFETRKLKKKPDTYRLACQVVVQGPVTVKTKP 98          
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A0C1US26_9CYAN (Iron ABC transporter substrate-binding protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A0C1US26_9CYAN)

HSP 1 Score: 95.1 bits (235), Expect = 1.490e-22
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 1
Query:  214 AKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVE-AEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK 471
            A  G NLR   +   +++Y +VGKM NC G GQCGTCVV++ E +E   PR++ E  KL+ RPE+ RL+CQT++ GD T+ TKP KK
Sbjct:   15 AADGANLRYKAMENDIDIYTLVGKMMNCGGYGQCGTCVVEITEGSENLSPRTQVEERKLRKRPENCRLACQTLVNGDITVKTKPKKK 101          
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: K9ZKA7_ANACC (Ferredoxin n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) TaxID=272123 RepID=K9ZKA7_ANACC)

HSP 1 Score: 94.4 bits (233), Expect = 2.740e-22
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  223 GDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEA-EGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKP 462
            G NLR   +   +++Y ++GKMTNC G GQCGTC+VQVVE  E   PR+++E  K K +P++ RL+CQT++ G  ++VTKP
Sbjct:   18 GANLRLKAMENNIDIYTLIGKMTNCGGAGQCGTCIVQVVEGLENLSPRTDFENRKFKKKPDNYRLACQTLVNGPVSVVTKP 98          
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: A0A8J5XJU3_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJU3_DIALT)

HSP 1 Score: 98.2 bits (243), Expect = 5.460e-22
Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  223 GDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKP 462
            G  LR  LL  KV+VY MVGKMTNC G GQCGTCVV +    G  PR+  E  KLKG+P S RL+CQTV+ GD T+ TKP
Sbjct:  191 GAILRTELLKAKVDVYTMVGKMTNCGGAGQCGTCVVDI-SGGGCSPRTAVEEAKLKGKPASYRLACQTVLTGDTTVATKP 269          
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Match: L8LWY8_9CYAN (Ferredoxin n=2 Tax=Xenococcus sp. PCC 7305 TaxID=102125 RepID=L8LWY8_9CYAN)

HSP 1 Score: 93.6 bits (231), Expect = 7.890e-22
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  223 GDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEA-EGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVTKPPKK 471
            G NLR+  L  K+++Y + GK+TNC G GQCGTCVV++VE  E   PR+ +E  KLK +P+S RL+CQ  + G  T+ TKP  K
Sbjct:   23 GANLRERALENKIDIYTLKGKLTNCGGYGQCGTCVVEIVEGMENLSPRTAFEQRKLKKKPDSYRLACQATVNGSVTVATKPKLK 106          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6146.16836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDD4_ECTSI5.740e-9193.13PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CP36_9STRA7.190e-4048.152Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S3YA98_HETAK2.720e-2942.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D0U6_9STRA2.070e-2656.382Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S1XJK9_9STRA4.530e-2438.51Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A098TL89_9CYAN5.990e-2453.93Iron ABC transporter substrate-binding protein n=1... [more]
A0A0C1US26_9CYAN1.490e-2250.57Iron ABC transporter substrate-binding protein n=4... [more]
K9ZKA7_ANACC2.740e-2249.38Ferredoxin n=1 Tax=Anabaena cylindrica (strain ATC... [more]
A0A8J5XJU3_DIALT5.460e-2260.00Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
L8LWY8_9CYAN7.890e-2250.00Ferredoxin n=2 Tax=Xenococcus sp. PCC 7305 TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6146contigEcto-sp13_S_contig6146:4490..6008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score272.7
Seed ortholog evalue1.1e-70
Seed eggNOG ortholog2880.D8LDD4
Model size474
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Domain present in PSD-95, Dlg, and ZO-1/2.
EggNOG OGs2DJ3Z@1,2S5ZV@2759
Cds size468
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.7767787-CDS-Ecto-sp13_S_contig6146:4489..45731681463856.7767787-CDS-Ecto-sp13_S_contig6146:4489..4573Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6146 4490..4573 -
1681463856.790271-CDS-Ecto-sp13_S_contig6146:5264..53691681463856.790271-CDS-Ecto-sp13_S_contig6146:5264..5369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6146 5265..5369 -
1681463856.7999063-CDS-Ecto-sp13_S_contig6146:5723..60021681463856.7999063-CDS-Ecto-sp13_S_contig6146:5723..6002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6146 5724..6002 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.8099132-UTR-Ecto-sp13_S_contig6146:6002..60081681463856.8099132-UTR-Ecto-sp13_S_contig6146:6002..6008Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6146 6003..6008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6146.16836.1prot_Ecto-sp13_S_contig6146.16836.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6146 4490..6002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6146.16836.1

>prot_Ecto-sp13_S_contig6146.16836.1 ID=prot_Ecto-sp13_S_contig6146.16836.1|Name=mRNA_Ecto-sp13_S_contig6146.16836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
MVLLEIGGKDVTGAMFDLVMDALVAAPAGEPIDLVFRDPSAAPAPAEAPA
PAVAIGVPCELTVGGVTLKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGG
GQCGTCVVQVVEAEGWDPRSEWEAGKLKGRPESQRLSCQTVIQGDATIVT
KPPKK*
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mRNA from alignment at Ecto-sp13_S_contig6146:4490..6008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6146.16836.1 ID=mRNA_Ecto-sp13_S_contig6146.16836.1|Name=mRNA_Ecto-sp13_S_contig6146.16836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6146:4490..6008- (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGACATGGTCCTGTTGGAGATCGGCGGGAAAGACGTCACGGGCGCGAT GTTCGACCTCGTGATGGACGCCCTCGTCGCGGCGCCGGCGGGGGAACCCA TCGATCTCGTCTTCCGCGACCCCTCAGCGGCGCCGGCGCCGGCAGAAGCA CCCGCACCGGCCGTGGCGATAGGAGTTCCCTGCGAGCTCACGGTCGGAGG CGTTACTCTGAAGGCCAAGACGGGGGATAACTTGCGCAAGACGCTCCTCG CGGGGAAGGTGGAGGTGTACGACATGGTCGGGAAGGTCGGTGTCTTTTGC CGCAGATCGGGATGGATGCACTCACAACAATTTCGAACATGTTTGAGTGT AGTATTTTTCGAGGCGTGCAAGGGTTTGTTCACTCCCGAGGCGGCGTTTG CGTGAAAAACGGTGCCTCTGCCGGTGCCGCAGATAATGCCAATAGGGTTT GCCTCATTTGCTCCTTGCTTCTGTGCGAGCAAGATGGAGGAACCGTGAAA ACGGTTGAATTAACAACACATCAACATGAAACGAGCAGCAGCGGCAGCAA CAACAACGGGGAGAAGACCATACACACGCAATAATCTAATCAACAACTAA GATGCCGTGCGTGCTGTTTCCGTGTGAATTTGTTACCAGATGACGAACTG TAACGGAGGGGGTCAGTGCGGCACTTGCGTTGTGCAGGTGGTCGAAGCCG AAGGCTGGGATCCCAGGAGCGAATGGGAAGCCGGAAAGCTCAAGGTGCAG CCAAGTCTTGTAGTACGGCCGCACGTTGCGCTAATAAGAAAACTGCGCAC CCCCTTTCCCCGCTCTCTCTACTTCGTAGGTTTGAGATTGAGATATGCCA GGGTGGCGAGAATGTCGAACTGAACGTTGAGTGGAAGAAAGTCGAAGGAC GATTTGCGAATCGGTACCCTGGTGTTGATGTGTTTGTTTGTCCCATTTAC TCTGCGTATGCATTTGTTTGACGCATCAGCCGGAGGATGCACTCGATAGA AAACGCACATGTTGTAGATGGAAGCGGTGGCAAATCTGACTATTTAGTTG CGATTTTGACTTCCTTACCAGCCTGGCCTGGCCTTCCAAAACACGCCACC CAACCCTTTACGACGGAACCTTCAACGGCTTGAGCCATTTGGCGAAGAGG AACTGGCACACGGGTGTTTCGTTCCCATTTGAGGCGCCCGGCTGAGGCAA GCGAAAAACAAGTGCTCTCGCCCCTCCACGCCCCGGCTTTCCTATACGAT CGTTCTTGCAACTTGTTCCGCTCTATCCGGTCCCAATCCGTTGGTTGTAT CCGAATCCGTTCCGTCCCGCGCCAATCCGTTCCGTCCCGTCCCGTCCGGT CCCAACCCATCCCGTCCCGTCCCATCACCCCTCTTTTCGGCGCGCCGCTC GATGCCCGCTCCTCGACCGTTTTTTTTTTTGACAGGGTCGACCGGAATCC CAGCGGCTGTCCTGCCAGACAGTTATCCAGGGGGACGCCACTATCGTCAC GAAGCCCCCAAAGAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6146:4490..6008-

>mRNA_Ecto-sp13_S_contig6146.16836.1 ID=mRNA_Ecto-sp13_S_contig6146.16836.1|Name=mRNA_Ecto-sp13_S_contig6146.16836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6146:4490..6008- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCTGTTGGAGATCGGCGGGAAAGACGTCACGGGCGCGATGTTCGA
CCTCGTGATGGACGCCCTCGTCGCGGCGCCGGCGGGGGAACCCATCGATC
TCGTCTTCCGCGACCCCTCAGCGGCGCCGGCGCCGGCAGAAGCACCCGCA
CCGGCCGTGGCGATAGGAGTTCCCTGCGAGCTCACGGTCGGAGGCGTTAC
TCTGAAGGCCAAGACGGGGGATAACTTGCGCAAGACGCTCCTCGCGGGGA
AGGTGGAGGTGTACGACATGGTCGGGAAGATGACGAACTGTAACGGAGGG
GGTCAGTGCGGCACTTGCGTTGTGCAGGTGGTCGAAGCCGAAGGCTGGGA
TCCCAGGAGCGAATGGGAAGCCGGAAAGCTCAAGGGTCGACCGGAATCCC
AGCGGCTGTCCTGCCAGACAGTTATCCAGGGGGACGCCACTATCGTCACG
AAGCCCCCAAAGAAGTAG
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