mRNA_Ecto-sp13_S_contig6146.16835.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6146.16835.1
Unique NamemRNA_Ecto-sp13_S_contig6146.16835.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6146.16835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6146contigEcto-sp13_S_contig6146:2940..3654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size715
Hectar predicted targeting categoryother localisation
Exons1
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.723393-UTR-Ecto-sp13_S_contig6146:2939..30371681463856.723393-UTR-Ecto-sp13_S_contig6146:2939..3037Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6146 2940..3037 +
1681463856.743701-UTR-Ecto-sp13_S_contig6146:3592..36541681463856.743701-UTR-Ecto-sp13_S_contig6146:3592..3654Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6146 3593..3654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.7330112-CDS-Ecto-sp13_S_contig6146:3037..35921681463856.7330112-CDS-Ecto-sp13_S_contig6146:3037..3592Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6146 3038..3592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6146.16835.1prot_Ecto-sp13_S_contig6146.16835.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6146 3038..3592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6146.16835.1

>prot_Ecto-sp13_S_contig6146.16835.1 ID=prot_Ecto-sp13_S_contig6146.16835.1|Name=mRNA_Ecto-sp13_S_contig6146.16835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MLTHDLDRFPTRLLGNKSREKIPPYPDKTSAPQCSGFTRSAWYPGFASPS
LRTRHAEAHFHASTPCHEVGLSTLHKGQLTPELLAPATPCRQRARTLIRQ
NHCSINPVYENHESVRSVAHTCLPPRPNFVDQRRRQAHCRRNPAVTAHEL
WMALSVRALVRRPLNIAVPPSNHKNAVIILPHSP*
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mRNA from alignment at Ecto-sp13_S_contig6146:2940..3654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6146.16835.1 ID=mRNA_Ecto-sp13_S_contig6146.16835.1|Name=mRNA_Ecto-sp13_S_contig6146.16835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=715bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6146:2940..3654+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATACTTTTCCCCCTGCGGTTCTTGCTTGCCTTAGTGTTTATCGCGAGAA
GGGTTCAGCCATCCCTTTCCCTCCTCGACCGTAAAGCCGAAGTTAAGCAT
GCTTACTCACGACCTAGATCGCTTTCCTACAAGGTTGCTGGGAAACAAAT
CCCGGGAAAAAATCCCTCCGTACCCGGATAAAACAAGCGCCCCACAATGT
AGCGGTTTCACGAGGAGTGCCTGGTACCCGGGTTTCGCATCGCCCTCACT
GCGAACACGACACGCAGAAGCGCATTTCCACGCTTCAACTCCATGCCATG
AGGTAGGCCTCTCGACTCTGCACAAGGGGCAACTAACTCCCGAATTGCTT
GCTCCTGCTACCCCCTGCCGTCAACGTGCCCGAACTCTTATTCGTCAAAA
CCATTGCTCAATCAATCCTGTATATGAGAACCACGAGAGCGTGCGGTCGG
TCGCGCATACATGCTTGCCTCCCAGACCGAACTTCGTCGATCAACGCCGC
CGTCAAGCACACTGTAGACGCAATCCCGCCGTCACTGCTCACGAGCTCTG
GATGGCCCTCTCTGTGCGTGCCCTTGTCCGTCGCCCTCTCAATATAGCGG
TGCCGCCATCGAATCACAAAAACGCAGTGATCATTCTACCGCACTCTCCA
TAAGCTCCAAAAATCTTGTAAACCACAAACAAACAGCCCATAAACTTTGG
AGCTCCCCCACGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6146:2940..3654+

>mRNA_Ecto-sp13_S_contig6146.16835.1 ID=mRNA_Ecto-sp13_S_contig6146.16835.1|Name=mRNA_Ecto-sp13_S_contig6146.16835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6146:2940..3654+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTACTCACGACCTAGATCGCTTTCCTACAAGGTTGCTGGGAAACAA
ATCCCGGGAAAAAATCCCTCCGTACCCGGATAAAACAAGCGCCCCACAAT
GTAGCGGTTTCACGAGGAGTGCCTGGTACCCGGGTTTCGCATCGCCCTCA
CTGCGAACACGACACGCAGAAGCGCATTTCCACGCTTCAACTCCATGCCA
TGAGGTAGGCCTCTCGACTCTGCACAAGGGGCAACTAACTCCCGAATTGC
TTGCTCCTGCTACCCCCTGCCGTCAACGTGCCCGAACTCTTATTCGTCAA
AACCATTGCTCAATCAATCCTGTATATGAGAACCACGAGAGCGTGCGGTC
GGTCGCGCATACATGCTTGCCTCCCAGACCGAACTTCGTCGATCAACGCC
GCCGTCAAGCACACTGTAGACGCAATCCCGCCGTCACTGCTCACGAGCTC
TGGATGGCCCTCTCTGTGCGTGCCCTTGTCCGTCGCCCTCTCAATATAGC
GGTGCCGCCATCGAATCACAAAAACGCAGTGATCATTCTACCGCACTCTC
CATAA
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