prot_Ecto-sp13_S_contig6145.16833.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6145.16833.1
Unique Nameprot_Ecto-sp13_S_contig6145.16833.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length536
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6145.16833.1 vs. uniprot
Match: A0A6H5KQA2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA2_9PHAE)

HSP 1 Score: 879 bits (2272), Expect = 0.000e+0
Identity = 508/519 (97.88%), Postives = 509/519 (98.07%), Query Frame = 0 
Query:   21 MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGARDQDGTGPAGTRTGERGEGL-SAPGNTRDDEYIYPDTGGVDDXXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPDTPSIHAGFVGANGVLKPAGFNDWKQ---QDICEAFVKIWELLQSQATAXXXXXXXXXXXXXXXXSTNAQCSSCGLVHSVGDGSLETHLMLALPDDSSDSAITLQGLLDDSTAPREMSDSHCTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGYGGKDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKAFVAGRSDTWVCADDADTTEVSWSDVSKVNPTIMVLERSRGGGVAATHGTDVTAFWSAAVAAAREQASGPAGQAVRTQFEGGPARQ 535
            MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGARDQDGTGPAGTRT +      SAPGNTRDDEYIYPDTGGVDDXXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPDTPSIHAGFVGANGVLKPAGFNDWKQ   QDICEAFVKIWELLQSQATAXXXXXXXXXXXXXXXXSTNAQCSSCGLVHSVGDGSLETHLMLALPDDSSDSAITLQGLLDDSTAPREMSDSHCTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGYGGKDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKAFVAGRSDTWVCADDADTTEVSWSDVSKVNPTIMVLERSRGGGVAATHGTDVTAFWSAAVAAAREQASGPAGQAVRTQFEGGPARQ
Sbjct:    1 MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGARDQDGTGPAGTRTDDDSASPESAPGNTRDDEYIYPDTGGVDDXXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPDTPSIHAGFVGANGVLKPAGFNDWKQASRQDICEAFVKIWELLQSQATAXXXXXXXXXXXXXXXXSTNAQCSSCGLVHSVGDGSLETHLMLALPDDSSDSAITLQGLLDDSTAPREMSDSHCTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGYGGKDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKAFVAGRSDTWVCADDADTTEVSWSDVSKVNPTIMVLERSRGGGVAATHGTDVTAFWSAAVAAAREQASGPAGQAVRTQFEGGPARQ 519
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BLAST of mRNA_Ecto-sp13_S_contig6145.16833.1 vs. uniprot
Match: D8LFQ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ3_ECTSI)

HSP 1 Score: 632 bits (1630), Expect = 1.640e-213
Identity = 378/516 (73.26%), Postives = 391/516 (75.78%), Query Frame = 0 
Query:   21 MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGARDQDGTGPAGTRTGERGEGL-SAPGNTRDDEYIYPDTGGVDDXXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPDTPSIHAGFVGANGVLKPAGFNDWKQQDICEAFVKIWELLQSQATAXXXXXXXXXXXXXXXXSTNAQCSSCGLVHSVGDGSLETHLMLALPDDSSDSAITLQGLLDDSTAPREMSDSHCTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGYGGKDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKAFVAGRSDTWVCADDADTTEVSWSDVSKVNPTIMVLERSRGGGVAATHGTDVTAFWSAAVAAAREQASGPAGQAVRTQFEGGPARQ 535
            MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGA DQDGTGPAGTRT +      SAPGNTRDD+YIYPDTGGVD XXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEP TPSIHAGFVGANG+LKPAGF  W+QQD+ EAF KIWELLQSQATA                STNA                                                                       PATLVV++NRTGWIDG GG+GGKD R VQFD+ ASLL+RSASGTT+ Q YDVRGIGVHIGPSLNAGHYKAFVAGR+DTWVCADDADTTEVSW DV KVNPTIMVLER  GGG AATHGTDV AFWSAAVAAAR QASG  GQ   +    GP  Q
Sbjct:    1 MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGAHDQDGTGPAGTRTDDDSASPESAPGNTRDDDYIYPDTGGVDXXXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPCTPSIHAGFVGANGILKPAGFKAWEQQDLGEAFFKIWELLQSQATATETPLPPPLAATTMTTSTNA-----------------------------------------------------------------------PATLVVMINRTGWIDGTGGHGGKDGRAVQFDRVASLLLRSASGTTRTQRYDVRGIGVHIGPSLNAGHYKAFVAGRNDTWVCADDADTTEVSWRDVRKVNPTIMVLERQHGGGAAATHGTDVPAFWSAAVAAARGQASGSGGQVPSSNDALGPPNQ 445
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BLAST of mRNA_Ecto-sp13_S_contig6145.16833.1 vs. uniprot
Match: A0A7S1U5Y3_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5Y3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.090e-6
Identity = 32/110 (29.09%), Postives = 59/110 (53.64%), Query Frame = 0 
Query:  362 CTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGYGG-KDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKAFVAGRSDTWVCADDADTTEV 470
            C  C +L  +++   + +APA L + + R  +  G G +GG K  R + + +  ++ +       +   Y ++G+ VH+G S+N GHY A+V G ++ W   DD+ T +V
Sbjct:  240 CGGCNKLVRARKQITVFRAPAVLCIQLKRFSFGFGGGFFGGGKITRFIPYPEVLTVDITGGRARREAVRYRLQGVVVHVGQSVNVGHYFAYVRGANNLWYLKDDSSTQQV 349
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6145.16833.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KQA2_9PHAE0.000e+097.88USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFQ3_ECTSI1.640e-21373.26Ubiquitin carboxyl-terminal hydrolase family prote... [more]
A0A7S1U5Y3_9STRA1.090e-629.09Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 181..480
e-value: 5.5E-15
score: 55.6
NoneNo IPR availableGENE3D3.90.70.10coord: 173..487
e-value: 5.1E-31
score: 110.0
NoneNo IPR availablePANTHERPTHR24006FAMILY NOT NAMEDcoord: 139..487
NoneNo IPR availablePANTHERPTHR24006:SF661UBIQUITIN SPECIFIC PEPTIDASE 45coord: 139..487
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 180..488
score: 19.675
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 180..487

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6145contigEcto-sp13_S_contig6145:837..5683 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6145.16833.1mRNA_Ecto-sp13_S_contig6145.16833.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6145 837..5683 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6145.16833.1 ID=prot_Ecto-sp13_S_contig6145.16833.1|Name=mRNA_Ecto-sp13_S_contig6145.16833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=536bp
GHRRQISHTCHQPPHPRRRGMASNTLKRRRSRLSLPSGPRGRSIEVEFMP
PPPRRPRTHDGARDQDGTGPAGTRTGERGEGLSAPGNTRDDEYIYPDTGG
VDDDDDDDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDARSNEN
ASSGGAAEASASQGSSSSRGASGEHVPARHGLTNGGSTCWLNTLIQVASS
PRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPDTPSIHA
GFVGANGVLKPAGFNDWKQQDICEAFVKIWELLQSQATATGTPLPPPLTA
TTMTTSTNAQCSSCGLVHSVGDGSLETHLMLALPDDSSDSAITLQGLLDD
STAPREMSDSHCTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGY
GGKDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKA
FVAGRSDTWVCADDADTTEVSWSDVSKVNPTIMVLERSRGGGVAATHGTD
VTAFWSAAVAAAREQASGPAGQAVRTQFEGGPARQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf