mRNA_Ecto-sp13_S_contig6145.16833.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6145.16833.1
Unique NamemRNA_Ecto-sp13_S_contig6145.16833.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6145.16833.1 vs. uniprot
Match: A0A6H5KQA2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA2_9PHAE)

HSP 1 Score: 879 bits (2272), Expect = 0.000e+0
Identity = 508/519 (97.88%), Postives = 509/519 (98.07%), Query Frame = 1 
Query:   61 MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGARDQDGTGPAGTRTGERGEGL-SAPGNTRDDEYIYPDTGGVDDXXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPDTPSIHAGFVGANGVLKPAGFNDWKQ---QDICEAFVKIWELLQSQATAXXXXXXXXXXXXXXXXSTNAQCSSCGLVHSVGDGSLETHLMLALPDDSSDSAITLQGLLDDSTAPREMSDSHCTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGYGGKDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKAFVAGRSDTWVCADDADTTEVSWSDVSKVNPTIMVLERSRGGGVAATHGTDVTAFWSAAVAAAREQASGPAGQAVRTQFEGGPARQ 1605
            MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGARDQDGTGPAGTRT +      SAPGNTRDDEYIYPDTGGVDDXXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPDTPSIHAGFVGANGVLKPAGFNDWKQ   QDICEAFVKIWELLQSQATAXXXXXXXXXXXXXXXXSTNAQCSSCGLVHSVGDGSLETHLMLALPDDSSDSAITLQGLLDDSTAPREMSDSHCTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGYGGKDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKAFVAGRSDTWVCADDADTTEVSWSDVSKVNPTIMVLERSRGGGVAATHGTDVTAFWSAAVAAAREQASGPAGQAVRTQFEGGPARQ
Sbjct:    1 MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGARDQDGTGPAGTRTDDDSASPESAPGNTRDDEYIYPDTGGVDDXXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPDTPSIHAGFVGANGVLKPAGFNDWKQASRQDICEAFVKIWELLQSQATAXXXXXXXXXXXXXXXXSTNAQCSSCGLVHSVGDGSLETHLMLALPDDSSDSAITLQGLLDDSTAPREMSDSHCTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGYGGKDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKAFVAGRSDTWVCADDADTTEVSWSDVSKVNPTIMVLERSRGGGVAATHGTDVTAFWSAAVAAAREQASGPAGQAVRTQFEGGPARQ 519
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6145.16833.1 vs. uniprot
Match: D8LFQ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ3_ECTSI)

HSP 1 Score: 632 bits (1630), Expect = 1.640e-213
Identity = 378/516 (73.26%), Postives = 391/516 (75.78%), Query Frame = 1 
Query:   61 MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGARDQDGTGPAGTRTGERGEGL-SAPGNTRDDEYIYPDTGGVDDXXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPDTPSIHAGFVGANGVLKPAGFNDWKQQDICEAFVKIWELLQSQATAXXXXXXXXXXXXXXXXSTNAQCSSCGLVHSVGDGSLETHLMLALPDDSSDSAITLQGLLDDSTAPREMSDSHCTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGYGGKDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKAFVAGRSDTWVCADDADTTEVSWSDVSKVNPTIMVLERSRGGGVAATHGTDVTAFWSAAVAAAREQASGPAGQAVRTQFEGGPARQ 1605
            MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGA DQDGTGPAGTRT +      SAPGNTRDD+YIYPDTGGVD XXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEP TPSIHAGFVGANG+LKPAGF  W+QQD+ EAF KIWELLQSQATA                STNA                                                                       PATLVV++NRTGWIDG GG+GGKD R VQFD+ ASLL+RSASGTT+ Q YDVRGIGVHIGPSLNAGHYKAFVAGR+DTWVCADDADTTEVSW DV KVNPTIMVLER  GGG AATHGTDV AFWSAAVAAAR QASG  GQ   +    GP  Q
Sbjct:    1 MASNTLKRRRSRLSLPSGPRGRSIEVEFMPPPPRRPRTHDGAHDQDGTGPAGTRTDDDSASPESAPGNTRDDDYIYPDTGGVDXXXXXDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXSGEHVPARHGLTNGGSTCWLNTLIQVASSPRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPCTPSIHAGFVGANGILKPAGFKAWEQQDLGEAFFKIWELLQSQATATETPLPPPLAATTMTTSTNA-----------------------------------------------------------------------PATLVVMINRTGWIDGTGGHGGKDGRAVQFDRVASLLLRSASGTTRTQRYDVRGIGVHIGPSLNAGHYKAFVAGRNDTWVCADDADTTEVSWRDVRKVNPTIMVLERQHGGGAAATHGTDVPAFWSAAVAAARGQASGSGGQVPSSNDALGPPNQ 445
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6145.16833.1 vs. uniprot
Match: A0A7S1U5Y3_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5Y3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.090e-6
Identity = 32/110 (29.09%), Postives = 59/110 (53.64%), Query Frame = 1 
Query: 1084 CTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGYGG-KDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKAFVAGRSDTWVCADDADTTEV 1410
            C  C +L  +++   + +APA L + + R  +  G G +GG K  R + + +  ++ +       +   Y ++G+ VH+G S+N GHY A+V G ++ W   DD+ T +V
Sbjct:  240 CGGCNKLVRARKQITVFRAPAVLCIQLKRFSFGFGGGFFGGGKITRFIPYPEVLTVDITGGRARREAVRYRLQGVVVHVGQSVNVGHYFAYVRGANNLWYLKDDSSTQQV 349
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6145.16833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KQA2_9PHAE0.000e+097.88USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFQ3_ECTSI1.640e-21373.26Ubiquitin carboxyl-terminal hydrolase family prote... [more]
A0A7S1U5Y3_9STRA1.090e-629.09Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6145contigEcto-sp13_S_contig6145:837..5683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score72.8
Seed ortholog evalue5.5e-10
Seed eggNOG ortholog5786.XP_003291691.1
Model size1609
KEGG koko:K11855
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.Belongs to the peptidase C19 family
EggNOG OGs3X8SQ@554915,KOG1865@1,KOG1865@2759
EC3.4.19.12
Cds size1608
COG Functional cat.O
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6145.16833.1prot_Ecto-sp13_S_contig6145.16833.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6145 837..5683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.5669968-CDS-Ecto-sp13_S_contig6145:836..10161681463856.5669968-CDS-Ecto-sp13_S_contig6145:836..1016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 837..1016 +
1681463856.5792398-CDS-Ecto-sp13_S_contig6145:1320..13861681463856.5792398-CDS-Ecto-sp13_S_contig6145:1320..1386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 1321..1386 +
1681463856.5886304-CDS-Ecto-sp13_S_contig6145:1792..19271681463856.5886304-CDS-Ecto-sp13_S_contig6145:1792..1927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 1793..1927 +
1681463856.5977445-CDS-Ecto-sp13_S_contig6145:2231..23751681463856.5977445-CDS-Ecto-sp13_S_contig6145:2231..2375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 2232..2375 +
1681463856.606811-CDS-Ecto-sp13_S_contig6145:2738..28491681463856.606811-CDS-Ecto-sp13_S_contig6145:2738..2849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 2739..2849 +
1681463856.6159093-CDS-Ecto-sp13_S_contig6145:3111..31861681463856.6159093-CDS-Ecto-sp13_S_contig6145:3111..3186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 3112..3186 +
1681463856.6250424-CDS-Ecto-sp13_S_contig6145:3426..35221681463856.6250424-CDS-Ecto-sp13_S_contig6145:3426..3522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 3427..3522 +
1681463856.6341443-CDS-Ecto-sp13_S_contig6145:3717..38341681463856.6341443-CDS-Ecto-sp13_S_contig6145:3717..3834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 3718..3834 +
1681463856.6460686-CDS-Ecto-sp13_S_contig6145:4115..43281681463856.6460686-CDS-Ecto-sp13_S_contig6145:4115..4328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 4116..4328 +
1681463856.6650913-CDS-Ecto-sp13_S_contig6145:4773..49371681463856.6650913-CDS-Ecto-sp13_S_contig6145:4773..4937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 4774..4937 +
1681463856.678314-CDS-Ecto-sp13_S_contig6145:5134..52401681463856.678314-CDS-Ecto-sp13_S_contig6145:5134..5240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 5135..5240 +
1681463856.6916392-CDS-Ecto-sp13_S_contig6145:5482..56831681463856.6916392-CDS-Ecto-sp13_S_contig6145:5482..5683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6145 5483..5683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6145.16833.1

>prot_Ecto-sp13_S_contig6145.16833.1 ID=prot_Ecto-sp13_S_contig6145.16833.1|Name=mRNA_Ecto-sp13_S_contig6145.16833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=536bp
GHRRQISHTCHQPPHPRRRGMASNTLKRRRSRLSLPSGPRGRSIEVEFMP
PPPRRPRTHDGARDQDGTGPAGTRTGERGEGLSAPGNTRDDEYIYPDTGG
VDDDDDDDMHVAVGQPAGPIQGRAAEEAARQEELARVLAESRRDARSNEN
ASSGGAAEASASQGSSSSRGASGEHVPARHGLTNGGSTCWLNTLIQVASS
PRTTLGRMLMELSRCDWDDAMKEGLSALWQMVDATGKVTSAEPDTPSIHA
GFVGANGVLKPAGFNDWKQQDICEAFVKIWELLQSQATATGTPLPPPLTA
TTMTTSTNAQCSSCGLVHSVGDGSLETHLMLALPDDSSDSAITLQGLLDD
STAPREMSDSHCTSCTQLTSSQQVTFMNKAPATLVVIVNRTGWIDGAGGY
GGKDNRTVQFDQTASLLVRSASGTTQRQVYDVRGIGVHIGPSLNAGHYKA
FVAGRSDTWVCADDADTTEVSWSDVSKVNPTIMVLERSRGGGVAATHGTD
VTAFWSAAVAAAREQASGPAGQAVRTQFEGGPARQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig6145:837..5683+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6145.16833.1 ID=mRNA_Ecto-sp13_S_contig6145.16833.1|Name=mRNA_Ecto-sp13_S_contig6145.16833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4847bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6145:837..5683+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGACATCGTCGTCAGATATCTCACACGTGTCACCAGCCCCCGCATCCCCG
ACGACGCGGGATGGCGTCGAACACGTTGAAGAGGCGCCGGTCAAGGTTGT
CCCTGCCATCGGGACCGCGTGGACGTTCGATCGAGGTCGAATTCATGCCA
CCCCCGCCGAGGCGACCGCGAACCCACGATGTAAGTTTGCAATTTTAACC
GACAATTCACATGTATGTGTCGGTGGAGGCGAAAGTGTACAGGTAATTGC
CCTCTTTCCTGTCATATGCGATGAGCGTTTGCGCCGGGCGGGCAAATTGC
GCCTTTTCTTTCAAAGCAAGGTTTCGCCACCACACATCGCTTTGTGAGGC
GTGGGTGTGCGAGTCACTCTTGGCCATTGATCTCGTACGCGCCCGACGTC
TCTCTCTCTCTCTCTCTCTCTGTGTGTGTTTTTATTCTGGCATTCTACAC
CTGTCGTGGCTCTTCGCCCCCCGTTGACGACCAGGGAGCCCGCGATCAGG
ACGGCACCGGGCCGGCGGGAACTCGCACCGGTGAGAGAGGAGAGGGTCTG
GTTTGTTTTGAGTTTTGGCGGTCATCGAGGGCACGACACGCAGAGGGTCA
GAGTGTTTCCAGCACGTGTGGCCAAATGCTGGCACGTGTCCCCTTCTCGT
TTAGCTTACAGGCACAGGGGTCGATATTTTCGACAGATACCCCGCAAATG
AGTGCTGGCCGCCCTTGGGCTTTGGCAAGCTAAAGGCTAGCTTAACTGTT
ATGTGCAATCACAACACAAGGGAGATGAAGGGAGGCAGAGAAGTCTCACC
GTGGACAGAAGCCCTAATCATGCACTCCATGTCTCGCGCTGTAGTGGTGC
TTGTGTTCCTTGCTCCCTCAACCCCACTCCCTCACCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCG
CCCGAGTCCGCCCCCGGGAACACGCGTGACGACGAATACATCTACCCGGA
CACGGGCGGCGTAGACGACGACGACGACGACGACATGCACGTGGCCGTCG
GGCAGCCAGCCGGTCCGATCCAGGGCCGAGCCGCCGAAGAGGTACTCGTA
TTTAGTTCGAATCGACCAGGGAATACGCCGCCATGTATACTACCACGGCG
CGAAGCCCGAGTGTCTCTTTCTTGAATGTTGCGCTTGCGCGTGCGCCGTT
GTGGAAGGGATGGTTAGTACGGCCAAGATGAGTGCTAGTACTCGAAGCCG
AGTCTCCGTGTCCGTCAGGGACTATCTCGTTGCGCAAGAGACCACACTAC
GGCTGTCTACCGTTCGTTCAAAGGCCGCGTTCTCCATCTCTTGTTGCTCG
TGCACCAAACTATCTTCCCCGTTGTTGGTTCGATGCGCCCCCCAGGCTGC
GCGGCAGGAAGAGCTCGCTCGGGTGTTGGCGGAGAGCAGGAGGGATGCGC
GGAGCAACGAGAATGCATCCTCCGGGGGCGCAGCGGAAGCCTCGGCCAGC
CAGGGCTCCTCCTCCAGCCGCGGGGCGAGTGGTGAACATGTGAGCACCGC
GTTTTTCGATAAGGTATGGTATCCGCCGCACCGCTGTTGTGTGTTTGTAC
TTCTACCGGGTGTCGTTCTCCTGACAACACGCACACACACACACACGCTT
CCCCTTGGTCGAGTTTGACCTTTGCGGGTACCTCCTCAGGTGTGCATGTT
TTTGTAGAGGTGGCGTGGATGTTACTCAAGAACACACACACGCACGTCCT
CATGGATGGGTCTCGCTCGTCAACCATGCCAGCTTACACCCCCATAATGT
GGTTGGTCACGCAAACAACGTTTCTTGACTCCGCGTGGCGTCGATTGGTT
ATTCCGTTGTTTGCCTGTTTCGCCTACTTTCCTTTGTTTTGGGCCCACAC
AGGTGCCGGCGAGACATGGGCTCACGAACGGCGGTTCGACCTGTTGGCTG
AACACCCTCATCCAAGTCGCGTCCAGCCCGCGCACGACCCTCGGCAGGAT
GCTGATGGAGCTGGTAAGGTTTTCGTGTCCCGGTTGTTCAGAGACAAAAG
TTGTAGCTCCAACCGGTGGAGGGCGCGTCGAGCACGAGCGAACGCGTTCA
ACCCAACGCGCTAGGTTCGACGTGATGCGAGAAATAGCGAGGTCGCCCTG
TGGGCAGCCTCTTGATAAAAGGGTTAGTATATATCGCGGCCGAGGAGAGC
CCGGTTGGCCAGATTCGTTCGGCGATCTCGGCCCCTCTGCTGCCCATGTG
CCCCACGTGCCCTGCTCAACGACAGTCCCGGTGCGATTGGGACGACGCCA
TGAAGGAGGGGCTCTCGGCACTCTGGCAGATGGTCGACGCCACTGGGAAG
GTACGGCTACATTTCGCACAATGCGAGTAGATTGTGTGAATTGGCAAACG
AGTTTGCTCCACTGTCTGGCTATCTTTTTTAATTCTCCGAGGCAACCGTG
GCTGGACGTAAAAAAAAACTTTAATGCGTGCGTGCTCCATTCATGCTGGA
TAATAGGAGTGTTGGTGCGGGTGGAGTAACGTCCACTTGGTGTTCCCATC
GGTGAAGATTTATCCTAAACGACAAGGATCCCGTCCGCAGGTGACCTCGG
CGGAGCCAGACACGCCCTCCATCCACGCTGGTTTCGTTGGGGCGAACGGA
GTCCTGAAGCCGGCGGGGTTCAACGATTGGAAGCAGGCAAGTCGTGTTGA
GCCTCGACCCTGTCCTTTGCGTATGTAGAAGTGGATGGCGCTGAACCGAG
CGCCAATATGTCGCGATGTTTAGGTGAAGCCATGATGCCCGGTGGCGGTG
CTCCATCGGGTCTGAGTGACGCGTCCCCACCGCCATCCCTTGCACCCCTC
CCTGTGCCCGCGATTTGGATAAAACGAACAGCAAGACATATGCGAGGCGT
TCGTCAAAATCTGGGAGCTGCTTCAGTCCCAGGCGACTGCGACGGGGACC
CCGCTGCCCCCCCCTCTGACAGCCACGACCATGACGACGTCAACTAACGT
GAGTTTGATGAAAGAAGCACCCGATCGCGCAGACCTTGCGAGAGACGGGG
GGAGGGTCGAACCTAGAGAGCAGGGTCATGCTTTCGGTGTCCTCTAAACA
TGAGTCCCATTTTGTCATTTATGAGTTGACTCCAACAACCCAGCAGCGCG
CGTGTATACGGGGCAGCACGCACACGCGAGTCACGATCGTATGCGAGCAG
AGCAAACCTCTGGGCTCGGAAGCGGGGACCCTCACGGCCGTAGTTGAACG
AGTCGTCAAATTGGTGCTCAAACGCGCAGGCACAATGCTCCTCGTGCGGC
TTGGTGCACTCGGTGGGAGACGGGAGCCTGGAGACGCACCTGATGCTGGC
TCTCCCCGACGATAGCAGCGACTCCGCGATCACCCTTCAGGGGCTGCTCG
ACGATTCGACGGCGCCCCGGGAGATGTCTGACTCGCATTGTACCAGCTGT
ACGCAGCTCACGTCGTCGCAGCAAGTCACGTTCATGAACAAGGTATCATA
TGTACGAGGGAGACCGTCGGCATAGTCGTAGACAGCCAGCCACTGCGAGC
CATCGTCGACGTTGCGAGTATTCGAATGCGTGGTGGCACGCGAAGAAAAA
CCCCGAAAAATAATATCAGATCGATGGCCGCTGCTGGTGCCGCGCTGCGG
CTGAAACTGTTTTGGTGTGGTGCGGGCTTGTGGCTCGTTCACCTGTACAT
TTTCATGTGCGTGCCTGCTGCGCGGGCATGCAGGTCTCGTCTACGTGTCT
GACATGTGCTGAGCTCGGTACATGTGTACAGCTCGAGCGGCAATCCAGAC
GCAAACAATGCAGAGAGAAAAACGCTCAACGACGAAACACCCCCCTGCCC
CCAAGAACGTATTTCCTTGTTTCACCCTTATGACCCATCGCCATTCTCTC
GCCGCCGCGTCGTTCCGCGACCCCGACATCCACCCAGGCACCTGCAACAT
TGGTGGTGATAGTCAACCGAACGGGGTGGATAGACGGCGCCGGGGGCTAC
GGCGGCAAGGACAACCGAACGGTCCAGTTTGACCAGACGGCTTCGCTCCT
CGTGCGGAGCGCTTCCGGAACCACGCAGAGGCAGGTCTACGACGTCCGGG
GGTGAGTTGGTAGCATCACGAGAGGAAAGGGGTCGGGAAATGGGAAGGGG
GAGGAGGGGGTTCGTTCGACCGACTTCCCACCCCCCACCCCTGCAGCGAA
TGCAGGCATTCCGCTCGATAACGTTGTACTTGTGTGGGTATAGTTCGATG
TGAAAAACGTGGACTTACGGAACGCGTCGTGTCGCGAACTCGAATCAGGA
TCGGGGTGCACATCGGACCCAGTCTCAACGCGGGCCACTACAAGGCGTTC
GTGGCGGGGCGAAGCGACACGTGGGTGTGCGCTGACGATGCGGACACCAC
GGAGGTGGGGACAAAACCGAAGCTTTTAAAGAGTTGATCCTGCAGCGGCG
TCGACCCCCGAAACCGCGGCTCGTCGTGCTACTGCGAAACAACTGTGTGT
GGGGTGGGGGATGGGGGTGGTGGGCAAGTAATGTATTGTGGTCTGTGCGT
GTAGAACAGAGAAAGGTAGAACGGGAGCATCGTCCGCCACCACTCCGACA
CTCCGACACTCTAGCAACACAACACAACACAACCCCGCCCGGTCAGGTGT
CGTGGAGCGACGTGAGCAAGGTGAACCCGACGATCATGGTCCTCGAGAGG
AGCCGCGGAGGCGGAGTCGCAGCCACCCACGGCACCGATGTGACCGCGTT
CTGGAGCGCGGCGGTCGCTGCCGCCAGAGAGCAGGCTTCGGGGCCAGCAG
GCCAGGCGGTGAGAACTCAGTTTGAGGGCGGGCCCGCGCGCCAATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6145:837..5683+

>mRNA_Ecto-sp13_S_contig6145.16833.1 ID=mRNA_Ecto-sp13_S_contig6145.16833.1|Name=mRNA_Ecto-sp13_S_contig6145.16833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1608bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6145:837..5683+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGACATCGTCGTCAGATATCTCACACGTGTCACCAGCCCCCGCATCCCCG
ACGACGCGGGATGGCGTCGAACACGTTGAAGAGGCGCCGGTCAAGGTTGT
CCCTGCCATCGGGACCGCGTGGACGTTCGATCGAGGTCGAATTCATGCCA
CCCCCGCCGAGGCGACCGCGAACCCACGATGGAGCCCGCGATCAGGACGG
CACCGGGCCGGCGGGAACTCGCACCGGTGAGAGAGGAGAGGGTCTGTCCG
CCCCCGGGAACACGCGTGACGACGAATACATCTACCCGGACACGGGCGGC
GTAGACGACGACGACGACGACGACATGCACGTGGCCGTCGGGCAGCCAGC
CGGTCCGATCCAGGGCCGAGCCGCCGAAGAGGCTGCGCGGCAGGAAGAGC
TCGCTCGGGTGTTGGCGGAGAGCAGGAGGGATGCGCGGAGCAACGAGAAT
GCATCCTCCGGGGGCGCAGCGGAAGCCTCGGCCAGCCAGGGCTCCTCCTC
CAGCCGCGGGGCGAGTGGTGAACATGTGCCGGCGAGACATGGGCTCACGA
ACGGCGGTTCGACCTGTTGGCTGAACACCCTCATCCAAGTCGCGTCCAGC
CCGCGCACGACCCTCGGCAGGATGCTGATGGAGCTGTCCCGGTGCGATTG
GGACGACGCCATGAAGGAGGGGCTCTCGGCACTCTGGCAGATGGTCGACG
CCACTGGGAAGGTGACCTCGGCGGAGCCAGACACGCCCTCCATCCACGCT
GGTTTCGTTGGGGCGAACGGAGTCCTGAAGCCGGCGGGGTTCAACGATTG
GAAGCAGCAAGACATATGCGAGGCGTTCGTCAAAATCTGGGAGCTGCTTC
AGTCCCAGGCGACTGCGACGGGGACCCCGCTGCCCCCCCCTCTGACAGCC
ACGACCATGACGACGTCAACTAACGCACAATGCTCCTCGTGCGGCTTGGT
GCACTCGGTGGGAGACGGGAGCCTGGAGACGCACCTGATGCTGGCTCTCC
CCGACGATAGCAGCGACTCCGCGATCACCCTTCAGGGGCTGCTCGACGAT
TCGACGGCGCCCCGGGAGATGTCTGACTCGCATTGTACCAGCTGTACGCA
GCTCACGTCGTCGCAGCAAGTCACGTTCATGAACAAGGCACCTGCAACAT
TGGTGGTGATAGTCAACCGAACGGGGTGGATAGACGGCGCCGGGGGCTAC
GGCGGCAAGGACAACCGAACGGTCCAGTTTGACCAGACGGCTTCGCTCCT
CGTGCGGAGCGCTTCCGGAACCACGCAGAGGCAGGTCTACGACGTCCGGG
GGATCGGGGTGCACATCGGACCCAGTCTCAACGCGGGCCACTACAAGGCG
TTCGTGGCGGGGCGAAGCGACACGTGGGTGTGCGCTGACGATGCGGACAC
CACGGAGGTGTCGTGGAGCGACGTGAGCAAGGTGAACCCGACGATCATGG
TCCTCGAGAGGAGCCGCGGAGGCGGAGTCGCAGCCACCCACGGCACCGAT
GTGACCGCGTTCTGGAGCGCGGCGGTCGCTGCCGCCAGAGAGCAGGCTTC
GGGGCCAGCAGGCCAGGCGGTGAGAACTCAGTTTGAGGGCGGGCCCGCGC
GCCAATAG
back to top