mRNA_Ecto-sp13_S_contig6145.16834.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6145.16834.1 vs. uniprot
Match: A0A6H5KRJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ5_9PHAE) HSP 1 Score: 776 bits (2005), Expect = 2.650e-273 Identity = 397/409 (97.07%), Postives = 399/409 (97.56%), Query Frame = 3
Query: 147 ALSPAQADAMKSLEHNAAWFLRVEDREVTPAEKQEARRLLENPRELHGLRNEALDDPRVYRGTRSAEDLDRHQLRNLVGAALLPENGLSKILGFFRGDLRALEIACKEAELQGPVRLSKFLGERGVDVPVNLNHPAFAGDPAAWTRPILLKQGMCLQYQKRAFYHESPTTTTGKASAAASKVSSFQGGPAGHGNRLGASCVKVEADRAGSSASAIPHCAALSQLRPELRKVAGVVERSFARSFLRHFTATPGVGVFRGGDITQAGCGRDTVRELASVGGRKAFVYWGRHQSRTIGDPDALESVARGDLELYKACTNGEAVTDAHVGEMMLDILMEAIEIHAGANGGPTDNDIRRSDELEEARDQGLPRIHEDAGRVGKELRGKHVRTREDCRAGGKYIRRAVSVSGRPR 1373
ALSPAQADAMKSLEHNAAWFLRVEDREVTPAEKQEARRLLENPRELHGLRNEALDDPRVYRGTRSAEDLDRHQLRNLVGAALLPENGLSKILGFFRGDLRALEIACKEAELQGPVRLSKFLGERGVDVPVNLNHPAFAGDPAAWTRPILLKQGMCLQYQKRAFYHESPTTTTGKASAAASKVSSFQGGPAGHGNRLGASCVKVEADRAGSSASAIPHCAALSQLRPELRKVAGVVERSFARSFLRHFTATPGVGVFRGGDITQAGCGRDTVRELASVGGRKAFVYWGRHQSRTIGDPDALES ARGDLELYKACTNGEAVTDAHVGEMMLDILMEAIEIHAGANGGPTD+DIRRSDELEEARDQGLPRIHEDAGRVGKELRGKHVRTREDCRAGG R S+ R R
Sbjct: 50 ALSPAQADAMKSLEHNAAWFLRVEDREVTPAEKQEARRLLENPRELHGLRNEALDDPRVYRGTRSAEDLDRHQLRNLVGAALLPENGLSKILGFFRGDLRALEIACKEAELQGPVRLSKFLGERGVDVPVNLNHPAFAGDPAAWTRPILLKQGMCLQYQKRAFYHESPTTTTGKASAAASKVSSFQGGPAGHGNRLGASCVKVEADRAGSSASAIPHCAALSQLRPELRKVAGVVERSFARSFLRHFTATPGVGVFRGGDITQAGCGRDTVRELASVGGRKAFVYWGRHQSRTIGDPDALESAARGDLELYKACTNGEAVTDAHVGEMMLDILMEAIEIHAGANGGPTDDDIRRSDELEEARDQGLPRIHEDAGRVGKELRGKHVRTREDCRAGGNP--REASIKKRRR 456
BLAST of mRNA_Ecto-sp13_S_contig6145.16834.1 vs. uniprot
Match: A0A6H5JH26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH26_9PHAE) HSP 1 Score: 282 bits (721), Expect = 5.300e-85 Identity = 190/365 (52.05%), Postives = 211/365 (57.81%), Query Frame = 3
Query: 246 QEARRLLENPRELHGLRNEALDDPRVYRGTRSAEDLDRHQLRNLVGAALLPENGLSKILGFFRGDLRALEIACKEAELQGPVRLSKFLGERGVDVPVNLNHPAFAGDPAAWTRPILLKQGMCLQYQKRAFYHESPTTTTGKASAAASKVSSFQGGPAGHGNRLGASCVKVEADRAGSSASAIPHCAALSQLRPELRKVAGVVERSFARSFLRHFTATPGVGVFRGGDITQAGCGRDTVRELASVGGRKAFVYWGRHQSRTIGDPDALES---VARGDLELYKACTNGEAVTDAHVGEMMLDILMEAIEIHAGANGGPTDNDIRRSDELEEARDQGLPRIHEDAGRVGKELRGKHVRTREDCRAGG 1331
QEARRLLENPRELHGLRNEALD PR YRGTRSAEDLDRHQLRNLVGAA LP+NGL KILGFF GDLRALE AC EAELQG V LSKF+G+RGVD PV + PAFAGDPAAWT PI L+ G E+ TT S + +G P+G RL L RK G G+ RGG G G + V + R A + T P + S + R L++ACTNG VTD VGEMMLD L E IEIHA ANGGPT N IRR DELEEARDQGL +I E AGRVG+E+RGKHVRTR+DC AGG
Sbjct: 2 QEARRLLENPRELHGLRNEALDHPRGYRGTRSAEDLDRHQLRNLVGAATLPDNGLVKILGFFLGDLRALESACAEAELQGLVELSKFVGDRGVDAPVVHDIPAFAGDPAAWTAPIPLEAGDVHPVT------EARVLTTMNPSP---PPNHREGVPSGQ-QRL-----------------------VLGGWAGRARKTTG--------------------GILRGG-----GGGSERVLGVRDPPLRCAV-------TATPPIPSSSRSGRALVRARSFLHRACTNGGTVTDTRVGEMMLDFLGEEIEIHAAANGGPTVNGIRRCDELEEARDQGLLQIREVAGRVGREVRGKHVRTRDDCAAGG 301
BLAST of mRNA_Ecto-sp13_S_contig6145.16834.1 vs. uniprot
Match: A0A6H5L2V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V6_9PHAE) HSP 1 Score: 270 bits (690), Expect = 1.620e-80 Identity = 183/373 (49.06%), Postives = 205/373 (54.96%), Query Frame = 3
Query: 246 QEARRLLENPRELHGLRNEALDDPRVYRGTRSAEDLDRHQLRNLVGAALLPENGLSKILGFFRGDLRALEIACKEAELQGPVRLSKFLGERGVDVPVNLNHPA--FAGD-PAAWTRPILLKQGMCLQYQKRAFYHESPTTTTGKASAAASKVSSFQGGPAGHGNRLGASCVKVEADRAGSSASAIPHCAALSQLRPELRKVAGVVERSFARSFLRHFTATPGVGVFRGGDIT--------QAGCGRDTVRELASVGGRKAFVYWGRHQSRTIGDPDALESVARGDLELYKACTNGEAVTDAHVGEMMLDILMEAIEIHAGANGGPTDNDIRRSDELEEARDQGLPRIHEDAGRVGKELRGKHVRTREDCRAGG 1331
QEARRLLENPRELHGLRN+ALD PRVYRG RSAEDLDRHQLRNLVGAA LP+NGL KILGFF GDLRALE AC EAELQGPV SKF+G+RGV+ PV + PA G ++W KQG+CL DR IP L AG + F PG + G D+ +AG G E S G HQS+ + D ALES ARGDLEL++ACTNG VTD V EMMLD L EAIE HA ANGGPT N IRR DELE+ARDQGL +I AGRVG+E+RGKHVR R+D AGG
Sbjct: 2 QEARRLLENPRELHGLRNDALDHPRVYRGIRSAEDLDRHQLRNLVGAATLPDNGLVKILGFFLGDLRALESACAEAELQGPVEGSKFVGDRGVNAPVVHDLPATRLPGQLRSSW------KQGLCLH---------------------------------------------AVGDRGHRGLVPIP-----------LHLHAGCPQSFFV----------PGRPILDGRDVAGRLGHLPGRAGAGFGWEAEGVSSTGAA-------HQSKALRDAKALESAARGDLELHRACTNGGTVTDTRVVEMMLDFLGEAIEFHASANGGPTVNGIRRCDELEKARDQGLLQIRGVAGRVGREVRGKHVRARDDRAAGG 295
BLAST of mRNA_Ecto-sp13_S_contig6145.16834.1 vs. uniprot
Match: A0A6H5K8J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J1_9PHAE) HSP 1 Score: 209 bits (533), Expect = 1.090e-58 Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = 3
Query: 171 AMKSLEHNAAWFLRVEDREVTPAEKQEARRLLENPRELHGLRNEALDDPRVYRGTRSAEDLDRHQLRNLVGAALLPENGLSKILGFFRGDLRALEIACKEAELQGPVRLSKFLGERGVDVPVNLNHPAFAGDPAAWTRPILLKQG 605
++ S + + + ++DR+VTPA QEARRLLENPRELHGLRNEALD PRVYRGTRS EDLDRHQLRNLVG A LP+NGL KILGFF GDLRALE AC EAELQGPV LSKF+G+RGV PV + PAFAGDPAAWT PILL+ G
Sbjct: 125 SLSSATRSGCFCVCIDDRKVTPAAMQEARRLLENPRELHGLRNEALDHPRVYRGTRSTEDLDRHQLRNLVGTATLPDNGLVKILGFFLGDLRALESACAEAELQGPVELSKFVGDRGVHAPVVHDLPAFAGDPAAWTAPILLEAG 269
BLAST of mRNA_Ecto-sp13_S_contig6145.16834.1 vs. uniprot
Match: A0A6H5KHK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK6_9PHAE) HSP 1 Score: 202 bits (513), Expect = 9.520e-56 Identity = 156/377 (41.38%), Postives = 187/377 (49.60%), Query Frame = 3
Query: 222 REVT-PAEKQEARRLLENPRELH---GLRNE--ALDDPRVYRGTRSAEDLDRHQLRNLVGAALLPENGLSKILGFFRGDLRALEIACKEAELQGPVRLSKFLGERGVDVPVNLNHPAFAGDPAAWTRPILLKQGMCLQYQKRAFYHESPTTTTGKASAAASKVSSFQGGPAGHGNRLGASCVKVEADRAGSSASAIPHCAALSQLRPELRKVAGVVERSFARSFLRHFTATPGVGVFRGGDITQAGCGRDTVRELASVGGRKAFVYWGRH-QSRTIGDPDALESVARGDLELYKACTNGEAVTDAHVGEMMLDILMEAIEIHAGANGGPTDNDIRRSDELEEARDQGLPRIHEDAGRVGKELRGKHVRTREDCRAGG 1331
R VT P + Q+ RR L P H G+R ALD PRVYRGTRS EDLDRHQ+RNLVGAA LP+NGL I+G F GDLRALE AC EAELQGP N + A W + + +F SP+T+T S+ S G P+ L A + P V+ELASVG RKAF G ++R P +LES ARGDLEL++ACTNG VTD VGE+MLD L +AIEI+A ANGGP IRR +EL+EARD+GL +I + AGR G+E+RGKHVRTR DC AGG
Sbjct: 17 RHVTAPEQPQQGRRPLACPGRCHTVSGVRPGVGALDHPRVYRGTRSVEDLDRHQIRNLVGAATLPDNGLVNIVGCFLGDLRALESACAEAELQGP------------------NSRRSSDSAAQWG----------IADTEDSF--RSPSTSTQDTP---SRFSCPAGLPSKDATLLAA------------------------------------------------WDTFP------------------VVQELASVGRRKAFRLLGPPTRARLSATPKSLESAARGDLELHRACTNGGTVTDTRVGEIMLDFLGDAIEIYAAANGGPKVKGIRRCEELDEARDRGLLQIRKVAGRAGREVRGKHVRTRNDCAAGG 294
BLAST of mRNA_Ecto-sp13_S_contig6145.16834.1 vs. uniprot
Match: A0A6H5JA12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA12_9PHAE) HSP 1 Score: 174 bits (441), Expect = 1.370e-44 Identity = 152/407 (37.35%), Postives = 168/407 (41.28%), Query Frame = 3
Query: 246 QEARRLLENPRELHGLRNEALDDPRVYRGTRSAEDLDRHQLRNLVGAALLPENGLSKILGFFRGDLRALEIACKEAELQGPVRLSKFLGERGVDVPVNLNHPAFAGDPAAWTRPILLKQGMCLQYQKRAFYHESPTTTTGKASAAASKVSSFQGGPAGHGNRLGASCVKVEADRAGSSASAIPHCAALSQLRPELRKVAGVVERSFARSFLRHFTATPGVGVFRGGDITQAGCGRDTVRELASVGGRKAFVYWGRHQSRTIGDPDALESVARGDLELYKACTNGEAVTDAHVGEMMLDILMEAIEIHAGANGGPTDNDIRRSDELEEARDQGLPR----------------------------------------------IHEDAGRVGKELRGKHVRTREDCRAG 1328
QEARRLLENPRELHGLRN+ALD PRV RGTRSAEDLDR QLRNL AA LP+NGL KIL F GDL A ++ S +GG AG G VE R P C RP S R GVG G ++S G HQS + D ALES ARGDLEL++AC NG VTD VGEMMLD L EAIEIHA ANGGPT N +RR DELEEARDQG P+ I E AGRVG+E+RG+HVRTR+DC AG
Sbjct: 2 QEARRLLENPRELHGLRNKALDHPRVCRGTRSAEDLDRQQLRNL--AATLPDNGLVKILRFSLGDL------------------------------------------------------------------------------AGARESVCRGGAAGAGG--------VEQIRRR------PGCRCAGSSRPPGXXXXXXXLDSSDPLGSRGCAFRAGVGWEAEG--------------VSSTGAA--------HQSTALRDAKALESTARGDLELHRACPNGGTVTDTRVGEMMLDFLCEAIEIHAAANGGPTVNGMRRCDELEEARDQGFPKSARWRGAWGGRFGAKTSGPETTAPLEVXXXXXXXXXXXXXXXXLLEIREVAGRVGREVRGQHVRTRDDCAAG 292 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6145.16834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6145.16834.1 >prot_Ecto-sp13_S_contig6145.16834.1 ID=prot_Ecto-sp13_S_contig6145.16834.1|Name=mRNA_Ecto-sp13_S_contig6145.16834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=403bp MKSLEHNAAWFLRVEDREVTPAEKQEARRLLENPRELHGLRNEALDDPRVback to top mRNA from alignment at Ecto-sp13_S_contig6145:6156..8455+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6145.16834.1 ID=mRNA_Ecto-sp13_S_contig6145.16834.1|Name=mRNA_Ecto-sp13_S_contig6145.16834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6145:6156..8455+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6145:6156..8455+ >mRNA_Ecto-sp13_S_contig6145.16834.1 ID=mRNA_Ecto-sp13_S_contig6145.16834.1|Name=mRNA_Ecto-sp13_S_contig6145.16834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6145:6156..8455+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |