mRNA_Ecto-sp13_S_contig61443.16832.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61443.16832.1
Unique NamemRNA_Ecto-sp13_S_contig61443.16832.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61443.16832.1 vs. uniprot
Match: A0A6H5JN39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN39_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 2.160e-85
Identity = 137/172 (79.65%), Postives = 146/172 (84.88%), Query Frame = 1 
Query:    1 DHAGVAGLEGARELNLQGDPVSN-TFYVSYVGNASRPVSTDTTCIFSGAYVPQRTMSSLLWPFSLLIGWYELTDDALDGWRSNDGFTSV*GQIYPRLGLGTDESCGEFTSVEGMQPGVYVSKHHTLDHIGV-GWTLDTLQFATGAEIFAEIVTILLAMDEKHAARLAEARRI 510
            +HAGVA LEGARELNLQGDPVSN TFYVSYVGNASRPVST+TT I S   VPQ +M  LLWPFSLL+G  ELTDDA +GWRSNDGF SV GQI PRLGLGTD+ CGEFT+VE MQPGVY+SKHHTLDHIGV GWTLD LQ ATGAE FAE V  LLAMDEK+AARL EARRI
Sbjct:  103 NHAGVASLEGARELNLQGDPVSNNTFYVSYVGNASRPVSTNTTSILSEVCVPQSSMLILLWPFSLLMGLNELTDDAFNGWRSNDGFISVQGQICPRLGLGTDKFCGEFTTVEYMQPGVYLSKHHTLDHIGVIGWTLDPLQLATGAETFAETVAGLLAMDEKYAARLDEARRI 274
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BLAST of mRNA_Ecto-sp13_S_contig61443.16832.1 vs. uniprot
Match: D7G7L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L0_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 7.440e-31
Identity = 82/171 (47.95%), Postives = 85/171 (49.71%), Query Frame = 1 
Query:    1 DHAGVAGLEGARELNLQGDPVSN-TFYVSYVGNASRPVSTDTTCIFSGAYVPQRTMSSLLWPFSLLIGWYELTDDALDGWRSNDGFTSV*GQIYPRLGLGTDESCGEFTSVEGMQPGVYVSKHHTLDHIGVGWTLDTLQFATGAEIFAEIVTILLAMDEKHAARLAEARRI 510
            DHAGV+GLEGA+ELNLQGDPVSN TFY S                          MS LLWPFSLLIGWYELTDDA DGWRSNDG  SV                                                     GAEIFAEIVTILLAMDEKHAARL +ARRI
Sbjct:  278 DHAGVSGLEGAQELNLQGDPVSNNTFYSS--------------------------MSILLWPFSLLIGWYELTDDAFDGWRSNDGLISV----------------------------------------------------QGAEIFAEIVTILLAMDEKHAARLDDARRI 370
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61443.16832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN39_9PHAE2.160e-8579.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7L0_ECTSI7.440e-3147.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61443contigEcto-sp13_S_contig61443:302..811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size510
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-22_001980.2
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.4388068-UTR-Ecto-sp13_S_contig61443:301..4261681463856.4388068-UTR-Ecto-sp13_S_contig61443:301..426Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig61443 302..426 -
1681463856.4718046-UTR-Ecto-sp13_S_contig61443:726..8111681463856.4718046-UTR-Ecto-sp13_S_contig61443:726..811Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig61443 727..811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463856.452926-CDS-Ecto-sp13_S_contig61443:426..7261681463856.452926-CDS-Ecto-sp13_S_contig61443:426..726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61443 427..726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61443.16832.1prot_Ecto-sp13_S_contig61443.16832.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61443 427..726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61443.16832.1

>prot_Ecto-sp13_S_contig61443.16832.1 ID=prot_Ecto-sp13_S_contig61443.16832.1|Name=mRNA_Ecto-sp13_S_contig61443.16832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MSGTLHAPSRPTRLAFSPGRMYHSAPCRACSGRSPSSSAGMSSPTMPSTG
GAPTMASHLCKVRYTRGLVWAQTNPAASSLQSRVCSPAYMYRSTTPSTT*
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mRNA from alignment at Ecto-sp13_S_contig61443:302..811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61443.16832.1 ID=mRNA_Ecto-sp13_S_contig61443.16832.1|Name=mRNA_Ecto-sp13_S_contig61443.16832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61443:302..811- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCACGCTGGAGTCGCCGGCCTGGAGGGCGCGCGGGAACTCAACCTGCA
AGGCGATCCGGTGTCGAACACGTTCTACGTGAGCTATGTCGGGAACGCTT
CACGCCCCGTCTCGACCGACACGACTTGCATTTTCTCCGGGGCGTATGTA
CCACAGCGCACCATGTCGAGCTTGCTCTGGCCGTTCTCCCTCCTCATCGG
CTGGTATGAGCTCACCGACGATGCCCTCGACGGGTGGCGCTCCAACGATG
GCTTCACATCTGTGTAAGGTCAGATATACCCGCGGCTTGGTTTGGGCACA
GACGAATCCTGCGGCGAGTTCACTTCAGTCGAGGGTATGCAGCCCGGCGT
ATATGTATCGAAGCACCACACCCTCGACCACATAGGCGTCGGCTGGACGC
TGGACACCCTGCAATTCGCGACAGGGGCCGAGATCTTCGCCGAAATCGTC
ACTATCCTCCTGGCCATGGATGAAAAGCACGCCGCGAGGCTCGCCGAAGC
TCGGCGCATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61443:302..811-

>mRNA_Ecto-sp13_S_contig61443.16832.1 ID=mRNA_Ecto-sp13_S_contig61443.16832.1|Name=mRNA_Ecto-sp13_S_contig61443.16832.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61443:302..811- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGAACGCTTCACGCCCCGTCTCGACCGACACGACTTGCATTTTC
TCCGGGGCGTATGTACCACAGCGCACCATGTCGAGCTTGCTCTGGCCGTT
CTCCCTCCTCATCGGCTGGTATGAGCTCACCGACGATGCCCTCGACGGGT
GGCGCTCCAACGATGGCTTCACATCTGTGTAAGGTCAGATATACCCGCGG
CTTGGTTTGGGCACAGACGAATCCTGCGGCGAGTTCACTTCAGTCGAGGG
TATGCAGCCCGGCGTATATGTATCGAAGCACCACACCCTCGACCACATAG
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