mRNA_Ecto-sp13_S_contig11973.1683.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11973.1683.1
Unique NamemRNA_Ecto-sp13_S_contig11973.1683.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11973.1683.1 vs. uniprot
Match: D7FTY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY4_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.830e-32
Identity = 75/116 (64.66%), Postives = 85/116 (73.28%), Query Frame = 1 
Query:    4 GGAEMSQEDRKQSRSSKKVESRRLCEENISSRDPCLNGAVDRQAEAAQELVSKLSSGLGNKYEKAKMMRDIQGAKNDTTATGVPLAARTAYLPVVDHTTRISGMQAGSTFLLWAVF 351
            GGAEMSQEDRKQSRSSKK E  R  E   +++   L+GAVDRQAEAAQ+LVSKL+ GLGNKYE AKMMRDI+GAKN TTATG PL AR         T ++   QAGSTFL  A+F
Sbjct:   22 GGAEMSQEDRKQSRSSKKAEEGRQAESQATAQS-MLDGAVDRQAEAAQKLVSKLNPGLGNKYETAKMMRDIEGAKNVTTATGTPLHARC--------TKQLLTTQAGSTFLYSALF 128
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BLAST of mRNA_Ecto-sp13_S_contig11973.1683.1 vs. uniprot
Match: D7FTX9_ECTSI (U3 small nucleolar ribonucleoprotein protein MPP10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX9_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.820e-18
Identity = 55/82 (67.07%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    4 GGAEMSQEDRKQSRSSKKVESRRLCEENISSRDPCLNGAVDRQAEAAQELVSKLSSGLGNKYEKAKMMRDIQGAKNDTTATG 249
            GGAEMSQEDRK+SRSSKK   R+                  RQAEAAQ+LVSKL+ GLGNKYEKAKMMRDIQGAKN TTATG
Sbjct:  498 GGAEMSQEDRKRSRSSKKAVRRK----------------ARRQAEAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATG 563
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11973.1683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTY4_ECTSI1.830e-3264.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTX9_ECTSI1.820e-1867.07U3 small nucleolar ribonucleoprotein protein MPP10... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11973contigEcto-sp13_S_contig11973:728..1763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score83.2
Seed ortholog evalue9.8e-14
Seed eggNOG ortholog2880.D7FTX9
Preferred nameMPHOSPH10
Model size415
KEGG koko:K14559
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010563,GO:0010921,GO:0010923,GO:0016070,GO:0016072,GO:0019220,GO:0019222,GO:0022613,GO:0030490,GO:0030532,GO:0030684,GO:0030686,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0035303,GO:0035305,GO:0042254,GO:0042274,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045936,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0120114,GO:1901360,GO:1990904
Exons3
EggNOG free text desc.extracellular matrix structural constituent
EggNOG OGsCOG5384@1,KOG2600@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_002840.1
Cds size384
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462634.861438-UTR-Ecto-sp13_S_contig11973:727..7431681462634.861438-UTR-Ecto-sp13_S_contig11973:727..743Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11973 728..743 -
1681462634.905181-UTR-Ecto-sp13_S_contig11973:1748..17631681462634.905181-UTR-Ecto-sp13_S_contig11973:1748..1763Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11973 1749..1763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462634.8802524-CDS-Ecto-sp13_S_contig11973:743..10541681462634.8802524-CDS-Ecto-sp13_S_contig11973:743..1054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11973 744..1054 -
1681462634.888792-CDS-Ecto-sp13_S_contig11973:1598..16261681462634.888792-CDS-Ecto-sp13_S_contig11973:1598..1626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11973 1599..1626 -
1681462634.8971121-CDS-Ecto-sp13_S_contig11973:1703..17481681462634.8971121-CDS-Ecto-sp13_S_contig11973:1703..1748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11973 1704..1748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11973.1683.1prot_Ecto-sp13_S_contig11973.1683.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11973 744..1748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11973.1683.1

>prot_Ecto-sp13_S_contig11973.1683.1 ID=prot_Ecto-sp13_S_contig11973.1683.1|Name=mRNA_Ecto-sp13_S_contig11973.1683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
MSQEDRKQSRSSKKVESRRLCEENISSRDPCLNGAVDRQAEAAQELVSKL
SSGLGNKYEKAKMMRDIQGAKNDTTATGVPLAARTAYLPVVDHTTRISGM
QAGSTFLLWAVFLGPYRVEMLYTTHPP*
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mRNA from alignment at Ecto-sp13_S_contig11973:728..1763-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11973.1683.1 ID=mRNA_Ecto-sp13_S_contig11973.1683.1|Name=mRNA_Ecto-sp13_S_contig11973.1683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1036bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11973:728..1763- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGTGGGGCAGAAATGAGCCAGGAGGATCGAAAACAGTCGCGCTCGTC
GAAGAAGGTCGTCACGCGGAAAGCCAGGCGACAGGTGCGCATGCACACCA
CGTTATGGCGGGTGCCAGGCACAGAGTTAGCTGACAGGAGTCCCGAAGAT
TGTGTGAAGAGAATAGTTCACAAGAGTAAGGTGGCCTACGTGTGCTGCCT
TTTTTTGTTCAAACTGAGAGTGGCATGCGTGTCTCTGTTGGAGAGGTTGC
TCTTAGCGTTTCGGATCTGCCCGAAGACCGTCCAGAGCTATCTATGTACT
TCCCGCATGGCCTCTCTCTTCGAAGCATGAGGGTGTTGCTCGACTCAAAA
GCCGCTGTGAGGTCCTAGATATGGTGTACCGGTTGTCTAGATGGTGCAAA
CCAAGTTACCCGGTAACGGCGTTGGCCCCACCGAAGTGTCACCACCGGAG
ACGCAAATACAGCCTGCCTCCACGCCATCATGCATGTACCATGGCACCTC
GCAGTGGAAGACCGTAAATTTGAATATTGTACATCTACCGCAAGCCTCCT
TAAGTAAACGATTGAACGGGCGTTTTGGGTAGATTCTCTCAAGCGAGTTT
TGTTCTTGTCGGTGACGCCAAGATACACCGCCATTCTGTTTCGCCGCATG
CCGCACGCTGTTGATCAAATCAAGTGTTGCATTACTGCAAACAATTCTGG
CATTCCGAGTTTCTTCGCGCGATCCATGCTTGAATGGTGCCGTCGATCGT
CAGGCGGAAGCGGCCCAAGAGCTGGTGTCCAAGCTCAGTTCGGGTCTCGG
GAACAAGTACGAGAAGGCCAAGATGATGAGGGACATCCAGGGTGCCAAGA
ACGACACCACCGCCACAGGTGTTCCACTTGCTGCACGCACAGCGTACTTA
CCAGTTGTTGATCACACAACCAGGATCTCTGGTATGCAAGCAGGGAGCAC
CTTCCTTTTGTGGGCTGTTTTTCTCGGGCCGTATCGAGTCGAAATGCTCT
ACACCACGCATCCGCCGTAGCGGCACTTGTTTCGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11973:728..1763-

>mRNA_Ecto-sp13_S_contig11973.1683.1 ID=mRNA_Ecto-sp13_S_contig11973.1683.1|Name=mRNA_Ecto-sp13_S_contig11973.1683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11973:728..1763- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCAGGAGGATCGAAAACAGTCGCGCTCGTCGAAGAAGGTCGAGTC
CCGAAGATTGTGTGAAGAGAATATTTCTTCGCGCGATCCATGCTTGAATG
GTGCCGTCGATCGTCAGGCGGAAGCGGCCCAAGAGCTGGTGTCCAAGCTC
AGTTCGGGTCTCGGGAACAAGTACGAGAAGGCCAAGATGATGAGGGACAT
CCAGGGTGCCAAGAACGACACCACCGCCACAGGTGTTCCACTTGCTGCAC
GCACAGCGTACTTACCAGTTGTTGATCACACAACCAGGATCTCTGGTATG
CAAGCAGGGAGCACCTTCCTTTTGTGGGCTGTTTTTCTCGGGCCGTATCG
AGTCGAAATGCTCTACACCACGCATCCGCCGTAG
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