mRNA_Ecto-sp13_S_contig6138.16825.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6138.16825.1
Unique NamemRNA_Ecto-sp13_S_contig6138.16825.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6138.16825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6138contigEcto-sp13_S_contig6138:1004..7202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size288
Hectar predicted targeting categorymitochondrion
Exons3
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463855.22687-CDS-Ecto-sp13_S_contig6138:1003..10891681463855.22687-CDS-Ecto-sp13_S_contig6138:1003..1089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6138 1004..1089 -
1681463855.2382824-CDS-Ecto-sp13_S_contig6138:1706..18201681463855.2382824-CDS-Ecto-sp13_S_contig6138:1706..1820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6138 1707..1820 -
1681463855.2480104-CDS-Ecto-sp13_S_contig6138:7114..72021681463855.2480104-CDS-Ecto-sp13_S_contig6138:7114..7202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6138 7115..7202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6138.16825.1prot_Ecto-sp13_S_contig6138.16825.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6138 1004..7202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6138.16825.1

>prot_Ecto-sp13_S_contig6138.16825.1 ID=prot_Ecto-sp13_S_contig6138.16825.1|Name=mRNA_Ecto-sp13_S_contig6138.16825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
MLSRARNRIVLVSATAYPRTPRLPSTWTGPYGPYGLIRPIWTILPASLAS
QRTLDAPNETMRAAVDLGVLYVVLRLCPYSLVPAAIICRIEKLFR*
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mRNA from alignment at Ecto-sp13_S_contig6138:1004..7202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6138.16825.1 ID=mRNA_Ecto-sp13_S_contig6138.16825.1|Name=mRNA_Ecto-sp13_S_contig6138.16825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6199bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6138:1004..7202- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTCAAGGGCGAGGAATCGAATCGTCCTGGTCTCAGCAACTGCGTA
TCCTCGGACCCCGCGACTACCGAGCACATGGACCGGCCGTCGTCAGGTGT
TCATGAAGACCGCGCCTGGGTTTTCTGCATCCGGGGAGCCGCGTGCGGGT
GAAACAACGGAAAGCTGTAAAGGAGAGAGCTCGCGGGAGAAGAGCGGAGG
TGTCAGTGATGGACAGCGCGGCGGAGCCAAGCGAAGGTGGCACTTCGGTG
CTTTTGTTATCGGCGTGGATGTTTCTTGCCACCGCGAATAATCTATTCCA
TCTGCCCCAGCTACACTTGTGATTTCCTCAACATCATGCACGAAAAAGTC
GCAACTTCGTGGCCTAGTCTATCTTTGTTGTAGAAACAGCCTTCTTCTAG
ATCGTGTTCGGAGCTTTTCGGAGCGAGATCGACTGTTGGTTGCAGATGTG
TCGCATGTCCCCGTCGTCTAGAATAGGTTGTAGAAGAGAACATGGCCGTC
AGCGACAACTGGGATGATCTTCCTCTCAGACTAATCAGAAATGTGGCACG
ACAGGTGTGTGGCATCTACATACATACCGATTGTGTCGTGGCTCTCGTGG
CTCGTGTGATTTTGAAATGAAGTCTACTTGTAGTTTTGGCCGAGGCCGGG
TCTTACAAAGTAGTTCCTAGGATCATGCTACGAATGGCCGCTATGTACTA
CAAAGGTTTAGTGTAAGGGGTCTTCACTGAGCTCACAAACGGTGCTCAAC
CATGTAGCCTTTGAATTGTGTTAGGCTCATTTTCTTAAGTGCCAAGTTCT
TAAATGCGGGCGCTTCTTGCAGTCCGTTAGACGGCGCATGGATGGGTAGA
TGACAGCGTCTTACGGTAATTACGAAATACTCCTTGTGGAAAACAGGAGT
CATTGTTCTCGACAGACAGACGTTGGTTTCGGGAGATGTGGCCCACTTTA
AAGCGACCTCCACCCCCTTTTGAGAGCGTCTCTCTTGTCTGGTAGACAAG
AGGAAGGTTCACTATCTCTCAGGTTAATTAGAACAACCGGAGCGTCTGGC
GGCGAGTCGTACAATCTTTCTGCGCGTAGTTTGTCGGCGGTGGACCACGC
CCGCCACGTCATCAGCAGAGGTTCCACAAGTTGTTCGAAAACTATTTTTT
TGTCACCCGTTACTCTGTACATGATTGTAATTGAGAGGTGCATCGAACCC
GGCGAGTCTTCTACCACCGGACGCCAATGCGAAAAAAGAGGTAGTATCGT
CGTCGACAGACAGCGACACCGGTGGGAAGATGTGACCCGCATTATTAATG
GTCATCTCAATAGCAAGCAGTCCGCGCCCCCTGTCTACATGTAATACCAG
CGGGTGTACATCGAAGAAGACACGACGTTTTTGTGCATACCTCTCCTTGT
CGTTGTTTGAAGCGTGTGCCTGCCACCTTCGCCGACATTACTCATGAAAG
AGCCGTTTCGTTTCAACCGTTCAAAACACCGAAATTGTTCTGCCATAATG
ATTTTTTTGACAACAGGCGGTGGCCCTTGTTGATGGTCTTCATGGCGGGG
GTAGCCTCCTTGACACTCGATCCCGAGCCCGAAAATCCCGAAGATTTCAG
CGACCTCCTTCGCAGGTGAGGTTCGCCTGCACATCATTAATGATTGTGGC
TCGTGCGTACTTGGTCAATGTCACGACAGCATGGCGTAACCACAGACAGG
CAAGACTTAAATGTCACCCTCCACCCTCACCGGATACTCCGCACCGGATA
CTCCGCGACCGGCCACGAGGTCAGGGCACGTCCGGCACGGGTATAGACAT
AATACCCATAGCCATAGCGTCTGGTGCAGTTGCCGTGGGTTTACCCGCAC
CCGCACCCGTGTTGTGTACCCGTATCGGTTTTCTAGCATGATCGTACCCG
GTACCATCGACGCGTTTCGCCTAGGGCGTTACATTCTAAGCTTCCGGGAG
TGCCTGGTACGGGTATGATCTGCAATCTTGCGCGTGTATAGTAGGGGATG
TACTTTGCTTGTACCACAGAACCTTGACTCGGTCCCCTGTGCGACTCTGT
CCGGCGAATTGCGATCAGGTGCAAGTTCCAGATCCAAACTGCGACGGTTC
ACACTTTCGGAGCGGCTGCGGATACGCGTCCTCTTCAAGAACTCCATCAT
CTGGTAGAAACTTAATTGACATTGATCCGACGTTTGTGCGTTGTCATCTG
TCAGCGAGGTAGACTTCCGACATGAGCTGTGTTGGACCAGAGTCACCAGG
GTCTTAGGTTCAGGGTCCCGAAACTGCCGTTGCTGCCAGCGTTGGTGATG
ATGAGCGCTCTACAGCATATCAACGCGAGGACCTTTGGCACACCACAAGA
CGCCTCGCATTTTTCGAGTTTCTCGAAGAGCCGATTGCACCTTCTTTGCT
CTTTCGCTCGCATTCGTTTTCATTTGAGGTTCTGCTGATATGCACAACTT
CCGCACGGCACTGACCCCTGTATGCTCCGCAAGGTTTCGAAATCACTGAG
CACGACGGTAACGAAGCTTCTGGATGCCGATGATGTGGTCGGCATCATGC
TCAAAGGCATCCAATCCCCGTGTACGGAGGTAAGAACCAGCTTCTTTCTG
TCGATAGGTCAAGGGTATGTGTGTGGTTTGGAACGGTCAAGCAGGCCTGC
ATCTTTCCACGTTTTCACCACTGACTTAGCTCGGTGAAAATGTTGAACGT
GAGAACGCGAAAACACGAAACACGGAGTAGTGAAAACGTGAAAGAATGAC
AACGCGAAAACGTGAAAATGCGACGGTGAACGGGGCGTTTTCCTCCAGTC
TCGTCGGCGTAGTATCCTCAGCTCGCCTACCGCGGCACACCCAAAGCAAA
TAACCCACAGTGAATTGGCATCTTGACCGGAAGCCTGAGGGAGTGTTCCA
CCGTAGAGAGTTTTCATCTTGTCGGTGGGTCGATCTTGGTTTATCTTGCC
CGCGGGGGAAGTTGTTGCTCTTTCACTCACCTTCGTTTCCTTCATTTCCT
TCGTGCAACGCCGATGGAATTCTGCGAGAGTGCCAGTGCTCCGAGGTTGA
TTCGTAGAAACTTCCTTGGGGGGTTCATCCGAAGGAAGTACTACGCATCA
TTTGGCTGAGTGTAGCTCTACCCTCACCCTTTCCGCTACATCATCTCTTC
CCGTCATTTTCTCTCGCGACCTGCACATACGCCTCGCTCGGTAGGTCTCC
GCGCTTTGCAACCGTATCTTGTGTATCCTGTCCACCGATCTCCACATTGC
GGCGATAATGGCGAACGACCCATCAGTCCGAGTCGCCCTCGTCGGGGGCA
TCACGCGGCAGTTCTCCGGCAGGAAAGATGCGCGCGAAGCACACCTAGCG
CAAGTGCGGGAGATGTCTAATTGGAACGCCTCACCCGCACGTTATGGAGC
AGATAACGAGGTCGATGAGGCTCCAAATTCGCTGGCGGGCGACCCTGCGG
AGGTCAAGGCAGAGCGAGCGGCTGCTGATGCCATGTACTGTACTCTCATG
ATGCTTCGTAACGCCATGCGTGCATCTCGATGCTGTACTGGGACTCCAAG
CATATCTCCTACTGAGACAGGGTTATCCTTCGCATATGAACAATTGAAGC
AACAAGAGCTCCCGAAGGTTCTTCATCTTCTGGGCGGCACACATCACGAC
GAGGAGATTGGGGACGATCGGGGTGCCCCGGCGGTGTCAGACTGGAACCT
GCACCAAGAGTTGGTGGCAGACCTCGAAGAGCTTGTATTGGACACAACTG
CACCAGTTGGCGGGAGGGTGAGTGTTGTTGCGGTGACGCTACAGTACATG
TCTGCATTAGGTTTTTCATCTCGTTCCTGGTGCAATGATTTCTTTCCTCT
ATGGGCCAGTCAAATTTTCAAGCTCTCAAGGTCTGCGAGCAAGTTAGGCT
GAGACGGGTCTTCACGTCATCTTGGACAACTTCCGCTTAGTTGAGAGTGC
AGCAACTCGCCTACGAACTGCTGACAGCCGCGTTGCGCATACTACCGAAG
ATGCTCCTTTTGTTTCGTGCATGCTGCGGATACCATGCCAGAGAACGAGA
AATAAGGATACGGCCAAGGCTGAGAGCAAAACCGTTTTGGTTGTCTATTC
GGCAGGTTCGTCGTGGACTTAATGTTGTCGCTCTAATACCTTTCGGTCCA
TCGCCCAACCTGATCAATAACAAAACCATCGTGAAACCAGCAGAAAGAAG
GACGGGTGGCGACCGATGCACAGTCTCCGAGGCTAGATACGGCAGCCACT
TCTCTGCTAGCGGAGATCAGCGCTCATCCGCAGTGGGTGGGGCTTCTCAT
GCAAAGGTGAAGCAGAACTACTGTAGCGCGGTATGGTGGGCTGAACACCG
AGTCTTCGAGGGTACCGCCTGAACGACTCACTTGCTCACATACTTCGATC
CAACTAGTGTCAGGCGTTCGTTCACGCAATTTGCAGGAGAACCCTCCTCG
GTCTCGCGGCTTCGTGTCGACGGCCTTTCACCGGAAGTTCGGCCGAGATA
GCTACGCAGAATCTGTGCGCGGAGTATCGGAGGTACGTTTGTACGTTTGT
GACGCCGGCGATCTACTTCAGCACGGCGGTCGTTGTTTATCACACGCGCC
TCGGCTGACGAACGACACACGCTTTCTATCGCCGAGAACACAAAGAGGGC
GGGGCTGAAGCCGCGAACGCTGCGCGCTCGGTACGTTTGCACTCCCCGCC
GGCCCTTGCCAATCTCACGGCCCGTCCTGTTTTCGCGACGCAGGAGACAC
AGCTTATCGAACTTCAGCATGCCCAGGTTGACCTGGCAAGACCCCGTTTC
TGTTTCGATGGCTTGGTGCAATGACAAGCTTGAAACGGCGGGAGTCGGTG
TTGCCCTTGGCCCTGGGGAAGGAGACCAGGAGCTTGTTCGACACGTGAGC
CAATCTTGCCCCATTTCCGTGATCGGCTGCGGCGGTGCTTCAATTTCACG
TGTATTCCATTGGCAGCGCCCATATTTATATCCACCTCTATTTTTTCAAA
ACCGGTCGAATCTTGCGATCGTATGCTCGCTTCTCCTGGCGGATAACAGA
CGCCGCTTCTCTTGAACCCCGTTTCGGCTAACGGCCGCTCTTGCTGCCGT
CACTGTCCGGGTACATCCCCTTCTTTCAGGCCGAACGAGTCCGGGCAGTG
ATCTCCGGGGCGGAGCCTGTCGGTGTCCTTTCCCCTCTGCACCCGTTCCT
GAATAGCGGCTATGTCGCCGAACTAGGTGCCCTAGCGTTCTCGTGGGGCG
TAATTCGCCGCGTGATCGCCTGGGGCAAAGCTGGAGAGCTGGCTGTTGCC
GCATCGCCCTGCGCTCTCCCGTGGGCAATGTTGTTGCTGGCGGGGCTGAG
GACGTTGTCGGGAACGGTGATCCTGATAGAAGCTTACGGACCGTACGGAC
TTATTCGTCCGATTTGGACGATTCTGCCGGCCTCGCTCGCTTCTCAACGG
ACGTTGGACGCCCCGAACGAGACGATGCGGGCAGCGGTTGATTTAGGTGC
GTTTTCGAGTGTACGTCTTCATTTCCACGCGAGCTATAGCTCAAACTTAG
GAGGGATTGGAGGATTGCCGCGGAAACTATGCATGCCTTCGTTCTTCCAC
GTATGTCGGCAGCTGTCCTAAGCATTTCGGAATCGACGAAAGACGAAGCA
ATGATTTGAATTGTGCGATAGCTCGAACCCTACCTCGCCACGTTGCGGCG
TCGCTTGTATTCCTCCTTGTGTCAGCCCAGCTTATACAATTCTTACTCGC
TACAACGGTCTCCTTCGTAGGGTCCTCTGCTGAGAACTGTAATGGAGCAA
CTAGTGTATGAACGTCGTATGATCATGACATCATGACATGGATATTTTGT
ATTTTCGTTGGTTACTGTGACTGAGATTCCAACCCCCGTCGTCACTCTCG
ACTTGTGAGCGCGGAACGCGGGCTAGGTATGAAGAGGATAAAACATGAAA
TGCAACAACAACTGTGAGTGAGCCAGCGAGGAGCAGCGGACCTGCTCCCT
TCCCTTTTATTTCCTTGTTCATCCATAACATTGTGGCGTCGTCGGCAGGA
CAATCTGGGATAAAATCAGATCGCTTCGGTTGTTGCTACTCCTCGTCCTC
GCTTGTGTTTCAGGTGTCTTGTACGTCGTGCTCCGTCTTTGCCCATACTC
TTTGGTGCCCGCGGCGATCATCTGTCGGATTGAAAAGTTATTCCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6138:1004..7202-

>mRNA_Ecto-sp13_S_contig6138.16825.1 ID=mRNA_Ecto-sp13_S_contig6138.16825.1|Name=mRNA_Ecto-sp13_S_contig6138.16825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6138:1004..7202- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTCAAGGGCGAGGAATCGAATCGTCCTGGTCTCAGCAACTGCGTA
TCCTCGGACCCCGCGACTACCGAGCACATGGACCGGCCCTTACGGACCGT
ACGGACTTATTCGTCCGATTTGGACGATTCTGCCGGCCTCGCTCGCTTCT
CAACGGACGTTGGACGCCCCGAACGAGACGATGCGGGCAGCGGTTGATTT
AGGTGTCTTGTACGTCGTGCTCCGTCTTTGCCCATACTCTTTGGTGCCCG
CGGCGATCATCTGTCGGATTGAAAAGTTATTCCGCTGA
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