mRNA_Ecto-sp13_S_contig61317.16818.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61317.16818.1
Unique NamemRNA_Ecto-sp13_S_contig61317.16818.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61317.16818.1 vs. uniprot
Match: A0A6H5K059_9PHAE (G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K059_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.790e-41
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:    4 EVARVGAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFMLRVVRSRRS 234
            EVARVGAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFMLRVVRSRRS
Sbjct:  243 EVARVGAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFMLRVVRSRRS 319
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BLAST of mRNA_Ecto-sp13_S_contig61317.16818.1 vs. uniprot
Match: A0A7S1G8W2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G8W2_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.890e-18
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:   10 ARVGAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFML 210
            A+ G  PGVTR +SA +++S PP+YL+DTPG+M+PRV++   GL LALT A+P++ VP  VLV F+L
Sbjct:   49 AKTGGEPGVTRHISAIQVSSRPPVYLLDTPGIMLPRVDNPHVGLKLALTGALPENTVPTRVLVDFLL 115
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BLAST of mRNA_Ecto-sp13_S_contig61317.16818.1 vs. uniprot
Match: A0A482RDB0_9ARCH (G domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RDB0_9ARCH)

HSP 1 Score: 82.0 bits (201), Expect = 4.910e-17
Identity = 35/67 (52.24%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:   10 ARVGAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFML 210
            A+ GA PG+TR VSAF++ + PPLY+ D+PG+M+PR+ES  AG+ LA+T A+PD+ +P  VL  ++L
Sbjct:   81 AKTGASPGITRSVSAFKLNTKPPLYVFDSPGIMLPRIESVEAGMKLAVTNALPDTIIPKPVLAEYLL 147
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BLAST of mRNA_Ecto-sp13_S_contig61317.16818.1 vs. uniprot
Match: A0A833QU74_9POAL (Mitochondrial ribosome-associated GTPase 1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QU74_9POAL)

HSP 1 Score: 78.2 bits (191), Expect = 2.960e-15
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   10 ARVGAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFMLRVVRSRRS 234
            A VG +PGVT+ +S F+IA+ P +Y++DTPGV+VP++     GL LALT AV DS V  + L  +ML V+ +RR+
Sbjct:  170 ATVGPLPGVTQDISGFKIANRPSIYVLDTPGVLVPKISDMETGLKLALTGAVKDSVVGEERLAKYMLSVLNTRRT 244
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BLAST of mRNA_Ecto-sp13_S_contig61317.16818.1 vs. uniprot
Match: A0A388K8C0_CHABU (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K8C0_CHABU)

HSP 1 Score: 78.6 bits (192), Expect = 3.070e-15
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 LEVARVGAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFMLRVV 219
            L+ A++G +PGVTR+V+ F++   P  Y++DTPGVMVP V+  T GL LALT AV DS V  + L  ++LRV+
Sbjct: 1176 LKTAKIGPLPGVTREVACFKVGEAPSTYIMDTPGVMVPNVKEATVGLKLALTGAVKDSVVGEERLARYLLRVL 1248
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BLAST of mRNA_Ecto-sp13_S_contig61317.16818.1 vs. uniprot
Match: A0A7J7QK11_9CHLO (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QK11_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 3.410e-14
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:   10 ARVGAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFMLRVVRS 225
            A VG  PG+TRQVS F++A+ PP+Y++DTPGVM+P V S   G  LAL  A+ DS V  + +V F++  V S
Sbjct:  154 AAVGPTPGLTRQVSGFQVAAEPPIYVLDTPGVMMPAVPSDEVGFKLALAGAIKDSVVGEEAIVRFLISQVSS 225
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BLAST of mRNA_Ecto-sp13_S_contig61317.16818.1 vs. uniprot
Match: A0A383VII8_TETOB (CP-type G domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VII8_TETOB)

HSP 1 Score: 75.1 bits (183), Expect = 3.940e-14
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:   10 ARVGAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFMLRVVRS 225
            A VG  PG+TRQVS F++A+ PP+Y++DTPGVM+P + S   G  LAL  A+ DS V  + +V F+L  + S
Sbjct:  154 AAVGPTPGLTRQVSGFQVAAQPPIYVLDTPGVMMPAIPSDEVGFRLALAGAIKDSVVGEEAIVRFLLSQISS 225
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BLAST of mRNA_Ecto-sp13_S_contig61317.16818.1 vs. uniprot
Match: A0A7I4B974_PHYPA (G domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4B974_PHYPA)

HSP 1 Score: 74.3 bits (181), Expect = 5.860e-14
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:    1 LEVARVGAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFMLRVVRSRRS 234
            L+ A+VG +PGVT+ +S F+I   P +Y++DTPGV+VP +++   GL LALT AV DS V  + +  ++L V+ +R S
Sbjct:  154 LKKAKVGPLPGVTQHISGFKIGEKPSVYVLDTPGVLVPNIDNIDTGLKLALTGAVKDSVVGEERVARYLLSVLNARSS 231
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BLAST of mRNA_Ecto-sp13_S_contig61317.16818.1 vs. uniprot
Match: A0A453JHM5_AEGTS (G domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453JHM5_AEGTS)

HSP 1 Score: 72.4 bits (176), Expect = 8.840e-14
Identity = 33/75 (44.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   10 ARVGAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFMLRVVRSRRS 234
            ARVG +PGVT+ ++ ++IAS P +Y++DTPGV+VP +     GL LALT AV DS V  + +  ++L ++  R++
Sbjct:   16 ARVGPLPGVTQDIAGYKIASQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLNIRKT 90
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BLAST of mRNA_Ecto-sp13_S_contig61317.16818.1 vs. uniprot
Match: A0A7S0WH74_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WH74_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 1.410e-13
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   19 GAMPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDSAVPPDVLVGFML 210
            G +PGVTR +SAF+I  NP +Y++DTPGVMVPR+     GL LALT +V DS V  + L  ++L
Sbjct:    6 GPLPGVTRHLSAFKIGGNPSMYVMDTPGVMVPRIADLEVGLKLALTGSVKDSVVGEERLAQYLL 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61317.16818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K059_9PHAE2.790e-41100.00G domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A7S1G8W2_9STRA2.890e-1855.22Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A482RDB0_9ARCH4.910e-1752.24G domain-containing protein (Fragment) n=1 Tax=arc... [more]
A0A833QU74_9POAL2.960e-1549.33Mitochondrial ribosome-associated GTPase 1 n=1 Tax... [more]
A0A388K8C0_CHABU3.070e-1550.68Radical S-adenosyl methionine domain-containing pr... [more]
A0A7J7QK11_9CHLO3.410e-1450.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A383VII8_TETOB3.940e-1448.61CP-type G domain-containing protein n=1 Tax=Tetrad... [more]
A0A7I4B974_PHYPA5.860e-1444.87G domain-containing protein n=1 Tax=Physcomitrium ... [more]
A0A453JHM5_AEGTS8.840e-1444.00G domain-containing protein n=1 Tax=Aegilops tausc... [more]
A0A7S0WH74_9CHLO1.410e-1353.13Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61317contigEcto-sp13_S_contig61317:570..803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score137.1
Seed ortholog evalue3.1e-30
Seed eggNOG ortholog2880.D8LR15
Preferred nameMTG1
Model size234
KEGG koko:K19828
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019222,GO:0019538,GO:0019866,GO:0022613,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043576,GO:0043603,GO:0043604,GO:0044057,GO:0044065,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051246,GO:0060255,GO:0065007,GO:0070013,GO:0070129,GO:0071704,GO:0071840,GO:0080090,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
Exons1
EggNOG free text desc.GTP binding
EggNOG OGsCOG1161@1,KOG2485@2759
Cds size210
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463854.598139-CDS-Ecto-sp13_S_contig61317:569..7791681463854.598139-CDS-Ecto-sp13_S_contig61317:569..779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61317 570..779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463854.6114595-UTR-Ecto-sp13_S_contig61317:779..8031681463854.6114595-UTR-Ecto-sp13_S_contig61317:779..803Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig61317 780..803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61317.16818.1prot_Ecto-sp13_S_contig61317.16818.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61317 570..779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61317.16818.1

>prot_Ecto-sp13_S_contig61317.16818.1 ID=prot_Ecto-sp13_S_contig61317.16818.1|Name=mRNA_Ecto-sp13_S_contig61317.16818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MPGVTRQVSAFRIASNPPLYLVDTPGVMVPRVESKTAGLFLALTRAVPDS
AVPPDVLVGFMLRVVRSRRS
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mRNA from alignment at Ecto-sp13_S_contig61317:570..803-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61317.16818.1 ID=mRNA_Ecto-sp13_S_contig61317.16818.1|Name=mRNA_Ecto-sp13_S_contig61317.16818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61317:570..803- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGAGGTGGCCCGCGTGGGTGCGATGCCCGGCGTCACCCGCCAAGTGTC
GGCCTTCCGTATCGCGTCCAACCCGCCGCTCTACCTGGTGGACACGCCAG
GAGTCATGGTGCCGCGGGTGGAGAGCAAGACGGCGGGACTGTTCCTCGCG
CTCACCCGGGCGGTCCCTGATTCTGCGGTGCCCCCCGATGTGCTGGTGGG
GTTCATGCTGCGGGTCGTGAGGTCCCGGAGGTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61317:570..803-

>mRNA_Ecto-sp13_S_contig61317.16818.1 ID=mRNA_Ecto-sp13_S_contig61317.16818.1|Name=mRNA_Ecto-sp13_S_contig61317.16818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61317:570..803- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGGCGTCACCCGCCAAGTGTCGGCCTTCCGTATCGCGTCCAACCC
GCCGCTCTACCTGGTGGACACGCCAGGAGTCATGGTGCCGCGGGTGGAGA
GCAAGACGGCGGGACTGTTCCTCGCGCTCACCCGGGCGGTCCCTGATTCT
GCGGTGCCCCCCGATGTGCTGGTGGGGTTCATGCTGCGGGTCGTGAGGTC
CCGGAGGTCT
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