prot_Ecto-sp13_S_contig61305.16817.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig61305.16817.1
Unique Nameprot_Ecto-sp13_S_contig61305.16817.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length46
Homology
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: D7FJ40_ECTSI (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ40_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.090e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0
Query:    1 MEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 42
            MEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAA K
Sbjct:  248 MEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAAK 289          
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: H3G957_PHYRM (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=26 Tax=Peronosporaceae TaxID=4777 RepID=H3G957_PHYRM)

HSP 1 Score: 79.0 bits (193), Expect = 2.840e-16
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 0
Query:    1 MEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 42
            M HGDP KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGK
Sbjct:  247 MAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGK 288          
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: A0A7S0Q9W7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q9W7_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 3.630e-16
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    2 EHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 42
            EHGDP KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAA K
Sbjct:  120 EHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAAK 160          
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: K3WLB6_GLOUD (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WLB6_GLOUD)

HSP 1 Score: 78.2 bits (191), Expect = 5.390e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0
Query:    1 MEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 42
            MEHGDP KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GK
Sbjct:  245 MEHGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGK 286          
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: A0A418B6N8_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B6N8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.050e-15
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0
Query:    1 MEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 42
            MEHGDP KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GK
Sbjct:  565 MEHGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGK 606          
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: A0A7S1CAF8_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAF8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.330e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0
Query:    1 MEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 42
            MEHGDPAKPVV FIAG TAPPGRRMGHAGAI+SGGKGTA  K
Sbjct:  263 MEHGDPAKPVVGFIAGLTAPPGRRMGHAGAIVSGGKGTAEAK 304          
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: W7U0D4_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0D4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.360e-15
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    3 HGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 42
            HGD +KPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK
Sbjct:  269 HGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 308          
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: A0A2D4BH57_PYTIN (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BH57_PYTIN)

HSP 1 Score: 73.9 bits (180), Expect = 2.060e-14
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0
Query:    3 HGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 42
            HGDP KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GK
Sbjct:  250 HGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGK 289          
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: A0A3R6WX05_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6WX05_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.460e-14
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0
Query:    2 EHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 42
            E+GDP KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GK
Sbjct:  230 EYGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGK 270          
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: F0YDA5_AURAN (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDA5_AURAN)

HSP 1 Score: 73.2 bits (178), Expect = 3.640e-14
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0
Query:    3 HGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 42
            HGDP KPVV FIAG+TAPPGRRMGHAGAI+SGGKGTAA K
Sbjct:  234 HGDPDKPVVGFIAGTTAPPGRRMGHAGAIVSGGKGTAAAK 273          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ40_ECTSI1.090e-1797.62Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
H3G957_PHYRM2.840e-1690.48Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S0Q9W7_9EUKA3.630e-1690.24Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
K3WLB6_GLOUD5.390e-1690.48Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A418B6N8_9STRA1.050e-1590.48Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S1CAF8_9STRA2.330e-1588.10Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
W7U0D4_9STRA2.360e-1595.00Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A2D4BH57_PYTIN2.060e-1490.00Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A3R6WX05_9STRA2.460e-1487.80Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
F0YDA5_AURAN3.640e-1487.50Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016102Succinyl-CoA synthetase-likeGENE3D3.40.50.261coord: 2..44
e-value: 2.4E-13
score: 52.0
IPR016102Succinyl-CoA synthetase-likeSUPERFAMILY52210Succinyl-CoA synthetase domainscoord: 6..43
NoneNo IPR availablePANTHERPTHR11117SUCCINYL-COA LIGASE SUBUNIT ALPHAcoord: 3..42
NoneNo IPR availablePANTHERPTHR11117:SF3SUCCINATE--COA LIGASE [ADP/GDP-FORMING] SUBUNIT ALPHA, MITOCHONDRIALcoord: 3..42
IPR017440ATP-citrate lyase/succinyl-CoA ligase, active sitePROSITEPS00399SUCCINYL_COA_LIG_2coord: 16..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61305contigEcto-sp13_S_contig61305:432..569 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61305.16817.1mRNA_Ecto-sp13_S_contig61305.16817.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig61305 432..596 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig61305.16817.1 ID=prot_Ecto-sp13_S_contig61305.16817.1|Name=mRNA_Ecto-sp13_S_contig61305.16817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
MEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKRGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016102Succinyl-CoA_synth-like
IPR017440Cit_synth/succinyl-CoA_lig_AS