mRNA_Ecto-sp13_S_contig61305.16817.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61305.16817.1
Unique NamemRNA_Ecto-sp13_S_contig61305.16817.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: D7FJ40_ECTSI (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ40_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.790e-24
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 153
            AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAA K
Sbjct:  239 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAAK 289
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BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: H3G957_PHYRM (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=26 Tax=Peronosporaceae TaxID=4777 RepID=H3G957_PHYRM)

HSP 1 Score: 95.9 bits (237), Expect = 1.860e-22
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 153
            AEE+AAEWLM HGDP KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGK
Sbjct:  238 AEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGK 288
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BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: A0A7S0Q9W7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q9W7_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 1.950e-22
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 153
            AEEDAA+W+ EHGDP KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAA K
Sbjct:  110 AEEDAADWIKEHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAAK 160
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BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: K3WLB6_GLOUD (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WLB6_GLOUD)

HSP 1 Score: 95.1 bits (235), Expect = 3.540e-22
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 153
            AEE+AAEWLMEHGDP KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GK
Sbjct:  236 AEEEAAEWLMEHGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGK 286
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BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: A0A7S1CAF8_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAF8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.620e-22
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 153
            AEEDAAEWLMEHGDPAKPVV FIAG TAPPGRRMGHAGAI+SGGKGTA  K
Sbjct:  254 AEEDAAEWLMEHGDPAKPVVGFIAGLTAPPGRRMGHAGAIVSGGKGTAEAK 304
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BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: A0A418B6N8_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B6N8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.740e-21
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 153
            AEE+AAEWLMEHGDP KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GK
Sbjct:  556 AEEEAAEWLMEHGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGK 606
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BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: W7U0D4_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0D4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.480e-21
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 153
            AEE+AAEWL  HGD +KPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK
Sbjct:  258 AEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 308
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BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: A0A2D4BH57_PYTIN (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BH57_PYTIN)

HSP 1 Score: 90.5 bits (223), Expect = 2.090e-20
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 153
            AEE+AAEWL  HGDP KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GK
Sbjct:  239 AEEEAAEWLKAHGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGK 289
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BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: A0A3R6WX05_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6WX05_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.290e-20
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 153
            AEE+AAEWL E+GDP KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GK
Sbjct:  220 AEEEAAEWLPEYGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGK 270
[Close]
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Match: A0A7S0AIP9_9STRA (Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A7S0AIP9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.550e-20
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 AEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGK 153
            AEEDAAEWL EHGDP KPVVSFIAG TAPPGRRMGHAGAII+GGKG AA K
Sbjct:  256 AEEDAAEWLKEHGDPNKPVVSFIAGMTAPPGRRMGHAGAIIAGGKGGAADK 306
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61305.16817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ40_ECTSI1.790e-2498.04Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
H3G957_PHYRM1.860e-2290.20Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S0Q9W7_9EUKA1.950e-2286.27Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
K3WLB6_GLOUD3.540e-2290.20Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S1CAF8_9STRA4.620e-2290.20Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A418B6N8_9STRA1.740e-2190.20Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
W7U0D4_9STRA3.480e-2190.20Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A2D4BH57_PYTIN2.090e-2086.27Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A3R6WX05_9STRA2.290e-2086.27Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]
A0A7S0AIP9_9STRA2.550e-2088.24Succinate--CoA ligase [ADP-forming] subunit alpha,... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61305contigEcto-sp13_S_contig61305:432..596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score84.7
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D7FJ40
Preferred nameSCS-alpha
Model size165
KEGG rclassRC00004,RC00014
KEGG koko:K01899
KEGG ReactionR00432,R00727
KEGG Pathwayko00020,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0004776,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006104,GO:0006105,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Exons1
EggNOG free text desc.succinate-CoA ligase (GDP-forming) activity
EggNOG OGsCOG0074@1,KOG1255@2759
EC6.2.1.4,6.2.1.5
Cds size138
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463854.5490804-CDS-Ecto-sp13_S_contig61305:431..5691681463854.5490804-CDS-Ecto-sp13_S_contig61305:431..569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61305 432..569 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463854.5633936-UTR-Ecto-sp13_S_contig61305:569..5961681463854.5633936-UTR-Ecto-sp13_S_contig61305:569..596Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig61305 570..596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61305.16817.1prot_Ecto-sp13_S_contig61305.16817.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61305 432..569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61305.16817.1

>prot_Ecto-sp13_S_contig61305.16817.1 ID=prot_Ecto-sp13_S_contig61305.16817.1|Name=mRNA_Ecto-sp13_S_contig61305.16817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
MEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKRGF*
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mRNA from alignment at Ecto-sp13_S_contig61305:432..596-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61305.16817.1 ID=mRNA_Ecto-sp13_S_contig61305.16817.1|Name=mRNA_Ecto-sp13_S_contig61305.16817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61305:432..596- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGGAGGATGCGGCCGAGTGGCTGATGGAGCACGGGGATCCTGCTAA
GCCTGTAGTGAGCTTTATTGCTGGCTCCACGGCTCCCCCGGGAAGGCGCA
TGGGGCATGCGGGTGCTATTATCTCAGGCGGCAAGGGCACGGCTGCCGGT
AAGCGGGGATTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61305:432..596-

>mRNA_Ecto-sp13_S_contig61305.16817.1 ID=mRNA_Ecto-sp13_S_contig61305.16817.1|Name=mRNA_Ecto-sp13_S_contig61305.16817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61305:432..596- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCACGGGGATCCTGCTAAGCCTGTAGTGAGCTTTATTGCTGGCTC
CACGGCTCCCCCGGGAAGGCGCATGGGGCATGCGGGTGCTATTATCTCAG
GCGGCAAGGGCACGGCTGCCGGTAAGCGGGGATTCTGA
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