mRNA_Ecto-sp13_S_contig6125.16811.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6125.16811.1
Unique NamemRNA_Ecto-sp13_S_contig6125.16811.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6125.16811.1 vs. uniprot
Match: D8LDM1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDM1_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.280e-29
Identity = 166/274 (60.58%), Postives = 166/274 (60.58%), Query Frame = 1 
Query:   46 PPGPSEYNTPSIPADGSGGNYGGDAYGGGVGGGYDDYPAERADGXXXXXXXXXXXXXXXXXXXAQNRVASGGGGGGEYNDXXXXXXXXXXXXXXXXDHXXYAANXAGRDAAYGAEYDGVARGXKTXXXXXXXXXXXXXXGDGYRHSGGAYRGGRHSGXXXXXXXXXXDQYAGGADQGRSGGQAATGYGDSRTGDNGGYPAAGGNGYQAETEGSRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RTGXXXXXPSQAADSGYGTA 852
            PPGPSEYNTPSIPADGSGGNYGGDAYG     GYDDYPAERADGXXXXXXXXXXXXXXXXXXXAQNR ASG     EYND  X XXX         DH  YAAN AGRDAAYGAE       X  XXXXXXXXXXXXXX                  XXXXXXXXXX                 TGYGDSRTGDNGGYPAA GNGYQ ETEGSRGGXXXXXXX                               RTG     PSQAADSGYGTA
Sbjct:  604 PPGPSEYNTPSIPADGSGGNYGGDAYGXXXXXGYDDYPAERADGXXXXXXXXXXXXXXXXXXXAQNRAASGXXXXXEYNDGGXQXXXYGGAGSGA-DHGGYAANGAGRDAAYGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGYGDSRTGDNGGYPAAVGNGYQGETEGSRGGXXXXXXXYGQQGDGGSYRAEGAASSGYDQGYSGNPNNGRTGQQAGGPSQAADSGYGTA 876
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6125.16811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDM1_ECTSI2.280e-2960.58RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6125contigEcto-sp13_S_contig6125:6623..8152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1530
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1530
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463853.766468-CDS-Ecto-sp13_S_contig6125:6622..81521681463853.766468-CDS-Ecto-sp13_S_contig6125:6622..8152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6125 6623..8152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6125.16811.1prot_Ecto-sp13_S_contig6125.16811.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6125 6623..8152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6125.16811.1

>prot_Ecto-sp13_S_contig6125.16811.1 ID=prot_Ecto-sp13_S_contig6125.16811.1|Name=mRNA_Ecto-sp13_S_contig6125.16811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=510bp
MLFFLLVLCIGERRGPPGPSEYNTPSIPADGSGGNYGGDAYGGGVGGGYD
DYPAERADGAGGYRDSYNNGAADSRGGYAQNRVASGGGGGGEYNDGGGQG
GGYDRGAGSGADHGGYAANGAGRDAAYGAEYDGVARGGKTGGYDDGYGGA
AADGGDGYRHSGGAYRGGRHSGGGGGTSSGNNDQYAGGADQGRSGGQAAT
GYGDSRTGDNGGYPAAGGNGYQAETEGSRGGGGYGQQGDGGSYRAEGAAS
SGYDQGYSGNTNNGRTGQQGGGPSQAADSGYGTAGGASGSGYDAGPVDSR
YDNGRNGASGGDGYGATGGDTYQTGGTYAQDASSRTPQGSLYGSQQQQQQ
QRQGYDAHGKTGAGGRPQSGDAGTKGGGGYAENNGGGDYNSSAAAGGGGQ
YRGGYADQQSSGGAGQQSSGYGGGQADGAYDAPTAGGAAGGSSGYAAQGS
YAQGGAEGDAEFWARGGGAGGSGGGYTDGGPHAASTGQYAAPETPGRGGG
GGGQGSYAW*
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mRNA from alignment at Ecto-sp13_S_contig6125:6623..8152-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6125.16811.1 ID=mRNA_Ecto-sp13_S_contig6125.16811.1|Name=mRNA_Ecto-sp13_S_contig6125.16811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6125:6623..8152- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTATTTTTTTTACTTGTTTTGTGTATAGGCGAGCGGCGCGGGCCTCC
TGGCCCGTCCGAGTACAACACGCCTTCCATCCCGGCTGATGGTTCCGGTG
GTAACTATGGTGGTGATGCCTACGGTGGGGGCGTGGGCGGGGGGTACGAC
GATTACCCCGCCGAAAGGGCGGATGGGGCCGGAGGTTACCGCGACAGTTA
TAACAACGGTGCTGCCGATAGCCGAGGGGGATACGCTCAGAACCGCGTCG
CGAGCGGTGGCGGAGGGGGAGGAGAGTACAATGATGGGGGGGGTCAAGGT
GGTGGGTACGACCGTGGAGCAGGGTCCGGGGCCGACCATGGCGGGTACGC
GGCTAACGGTGCCGGTAGGGACGCCGCGTACGGAGCTGAATATGACGGTG
TCGCCCGGGGTGGTAAGACCGGGGGTTACGATGACGGTTACGGCGGAGCC
GCCGCTGACGGCGGGGACGGCTACCGCCACTCGGGAGGGGCTTACAGGGG
TGGCAGACACAGCGGCGGCGGCGGCGGTACTTCCTCAGGGAACAATGATC
AGTACGCAGGGGGGGCAGACCAGGGCAGATCGGGTGGCCAGGCCGCAACC
GGCTACGGTGACAGCAGAACCGGCGACAATGGAGGATACCCCGCTGCCGG
GGGAAACGGCTACCAGGCGGAGACGGAGGGCAGCAGGGGCGGGGGCGGCT
ACGGACAGCAGGGAGACGGGGGAAGCTACAGAGCGGAGGGTGCCGCATCT
TCCGGGTATGACCAGGGCTACAGCGGCAACACCAACAATGGCCGCACAGG
ACAACAGGGAGGAGGTCCGAGCCAGGCTGCCGACAGTGGCTACGGCACCG
CCGGCGGCGCATCGGGCAGCGGGTACGATGCAGGACCGGTGGACAGTCGC
TACGACAACGGCCGCAACGGCGCAAGTGGTGGCGATGGTTACGGCGCCAC
CGGCGGCGACACCTACCAGACCGGCGGCACGTACGCGCAGGACGCGTCGT
CGAGGACTCCCCAAGGCTCTCTCTACGGCTCACAGCAGCAGCAGCAGCAG
CAGCGGCAGGGCTACGACGCGCACGGCAAGACCGGCGCCGGCGGCAGGCC
TCAGAGCGGCGACGCCGGGACAAAGGGTGGCGGCGGGTACGCTGAAAACA
ACGGCGGCGGGGACTACAACAGCTCCGCGGCCGCCGGCGGAGGGGGTCAG
TACCGCGGCGGCTACGCGGACCAGCAGTCTTCTGGCGGCGCCGGCCAGCA
GTCGTCGGGGTACGGCGGCGGCCAGGCTGACGGCGCTTACGACGCTCCCA
CCGCCGGCGGTGCCGCGGGAGGCTCTAGCGGCTACGCTGCCCAAGGCAGC
TACGCCCAAGGCGGCGCCGAGGGTGACGCCGAGTTCTGGGCGCGCGGCGG
CGGGGCGGGAGGATCAGGCGGCGGTTACACCGACGGTGGTCCTCATGCCG
CCTCTACCGGGCAGTACGCCGCTCCCGAAACACCGGGAAGGGGAGGGGGC
GGAGGCGGGCAAGGATCGTACGCTTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6125:6623..8152-

>mRNA_Ecto-sp13_S_contig6125.16811.1 ID=mRNA_Ecto-sp13_S_contig6125.16811.1|Name=mRNA_Ecto-sp13_S_contig6125.16811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6125:6623..8152- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTATTTTTTTTACTTGTTTTGTGTATAGGCGAGCGGCGCGGGCCTCC
TGGCCCGTCCGAGTACAACACGCCTTCCATCCCGGCTGATGGTTCCGGTG
GTAACTATGGTGGTGATGCCTACGGTGGGGGCGTGGGCGGGGGGTACGAC
GATTACCCCGCCGAAAGGGCGGATGGGGCCGGAGGTTACCGCGACAGTTA
TAACAACGGTGCTGCCGATAGCCGAGGGGGATACGCTCAGAACCGCGTCG
CGAGCGGTGGCGGAGGGGGAGGAGAGTACAATGATGGGGGGGGTCAAGGT
GGTGGGTACGACCGTGGAGCAGGGTCCGGGGCCGACCATGGCGGGTACGC
GGCTAACGGTGCCGGTAGGGACGCCGCGTACGGAGCTGAATATGACGGTG
TCGCCCGGGGTGGTAAGACCGGGGGTTACGATGACGGTTACGGCGGAGCC
GCCGCTGACGGCGGGGACGGCTACCGCCACTCGGGAGGGGCTTACAGGGG
TGGCAGACACAGCGGCGGCGGCGGCGGTACTTCCTCAGGGAACAATGATC
AGTACGCAGGGGGGGCAGACCAGGGCAGATCGGGTGGCCAGGCCGCAACC
GGCTACGGTGACAGCAGAACCGGCGACAATGGAGGATACCCCGCTGCCGG
GGGAAACGGCTACCAGGCGGAGACGGAGGGCAGCAGGGGCGGGGGCGGCT
ACGGACAGCAGGGAGACGGGGGAAGCTACAGAGCGGAGGGTGCCGCATCT
TCCGGGTATGACCAGGGCTACAGCGGCAACACCAACAATGGCCGCACAGG
ACAACAGGGAGGAGGTCCGAGCCAGGCTGCCGACAGTGGCTACGGCACCG
CCGGCGGCGCATCGGGCAGCGGGTACGATGCAGGACCGGTGGACAGTCGC
TACGACAACGGCCGCAACGGCGCAAGTGGTGGCGATGGTTACGGCGCCAC
CGGCGGCGACACCTACCAGACCGGCGGCACGTACGCGCAGGACGCGTCGT
CGAGGACTCCCCAAGGCTCTCTCTACGGCTCACAGCAGCAGCAGCAGCAG
CAGCGGCAGGGCTACGACGCGCACGGCAAGACCGGCGCCGGCGGCAGGCC
TCAGAGCGGCGACGCCGGGACAAAGGGTGGCGGCGGGTACGCTGAAAACA
ACGGCGGCGGGGACTACAACAGCTCCGCGGCCGCCGGCGGAGGGGGTCAG
TACCGCGGCGGCTACGCGGACCAGCAGTCTTCTGGCGGCGCCGGCCAGCA
GTCGTCGGGGTACGGCGGCGGCCAGGCTGACGGCGCTTACGACGCTCCCA
CCGCCGGCGGTGCCGCGGGAGGCTCTAGCGGCTACGCTGCCCAAGGCAGC
TACGCCCAAGGCGGCGCCGAGGGTGACGCCGAGTTCTGGGCGCGCGGCGG
CGGGGCGGGAGGATCAGGCGGCGGTTACACCGACGGTGGTCCTCATGCCG
CCTCTACCGGGCAGTACGCCGCTCCCGAAACACCGGGAAGGGGAGGGGGC
GGAGGCGGGCAAGGATCGTACGCTTGGTGA
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