mRNA_Ecto-sp13_S_contig6123.16810.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6123.16810.1
Unique NamemRNA_Ecto-sp13_S_contig6123.16810.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6123.16810.1 vs. uniprot
Match: A0A6H5KAJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ7_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 1.520e-102
Identity = 173/196 (88.27%), Postives = 181/196 (92.35%), Query Frame = 1 
Query:   22 MPMTRTKLRHGAASLLALWCTINQFREGHSNSAVSCPSETLLCLAEDDCSSCLTALQETSDTINPVFADCNVLFDSVCTFAANNGCNVANPLLEDYAACVADEEFGCPGFVSCADANSAAGTASPTPAVAXXXXXXXXXXXXXXXTEDVSVTSPPSGSDAAGEAGSASSGVAHTAVAGSVQTTLAVVCGLAFLLSA 609
            M MTRTKLRHGAASLLA+WC INQFREGHSNSAVSCPSET+LCLA+DDCSSCLTAL ETSDTINPVF DCNVLFDSVCTFA +NGC+V NPLLEDYAACVADE+FGCPGFVSCA ANS AGTA PTPAVA  XXXXXXXXXXXXXTEDVSVTSPP+GSDAAGEAG+ASSGV HT VA SVQTTLAVVCGLA LLSA
Sbjct:    1 MHMTRTKLRHGAASLLAMWCAINQFREGHSNSAVSCPSETVLCLADDDCSSCLTALMETSDTINPVFTDCNVLFDSVCTFAVDNGCDVTNPLLEDYAACVADEDFGCPGFVSCAGANSTAGTAPPTPAVAMSXXXXXXXXXXXXXTEDVSVTSPPAGSDAAGEAGTASSGVGHT-VAESVQTTLAVVCGLAILLSA 195
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BLAST of mRNA_Ecto-sp13_S_contig6123.16810.1 vs. uniprot
Match: D8LMI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMI0_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 3.290e-92
Identity = 163/205 (79.51%), Postives = 171/205 (83.41%), Query Frame = 1 
Query:   19 MMPMTRTKLRHGAASLLALWCTINQFREGHSNSAVSCPSETLLCLAEDDCSSCLTALQETSDTINPVFADCNVLFDSVCTFAANNGCNVANPLLEDYAACVADEEFGCPGFVSCADANSAAGTASPTPAVAXXXXXXXXXXXXXXX--------TEDVSVTSPPSGSDAAGEAGSASSGVAHTAVAGSVQTTLAVVCGLAFLLSA 609
            MM MTR  LRHGAASLLALWCT NQFR GHSNSAVSCPSETL CLA+DDCSSCLTAL ETSDTINPVFADCNVLF SVCTFAANNGC++ NPLLED+AACVADEEF CPGFVSCADANSAAGTASP PAVA     XXXXXXXXXX        TEDV VTS PSGSDA  EA + S GV+HT VA S++TTLAVVCGLA LLSA
Sbjct:    1 MMQMTRMNLRHGAASLLALWCTTNQFRVGHSNSAVSCPSETLSCLADDDCSSCLTALDETSDTINPVFADCNVLFASVCTFAANNGCDLTNPLLEDFAACVADEEFSCPGFVSCADANSAAGTASPAPAVATTAPTXXXXXXXXXXXXXXXTGSTEDVGVTSSPSGSDAGAEAETVSGGVSHT-VAESMKTTLAVVCGLAILLSA 204
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BLAST of mRNA_Ecto-sp13_S_contig6123.16810.1 vs. uniprot
Match: A0A6H5K763_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K763_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.660e-13
Identity = 50/120 (41.67%), Postives = 63/120 (52.50%), Query Frame = 1 
Query:   46 RHGAASLLALWCTINQFREGHS-NSAVSCPSETLLCLAEDDCSSCLTALQETS-DTINPVFADCNVLFDSVCTFAANNGCNVANPLLEDYAACVADEEFGCPGFVSCADANSAAGTASPT 399
            R  A +LLAL      F  G   +S + CP +   CL +D+CSSCL ALQE     I   F  C+ L+ SVC  A   GCN  N  L ++  CVAD+ FGC  F +CAD  +   T  PT
Sbjct:   14 RQLATALLALVVLNACFDLGTGFSSGIPCPVDLFSCLGDDECSSCLDALQENDLPLIGGDFELCDDLYASVCAAAEAIGCNTDNEELVEFLTCVADDSFGCGDFTTCADFPAEVETPPPT 133
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BLAST of mRNA_Ecto-sp13_S_contig6123.16810.1 vs. uniprot
Match: D8LCK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK8_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 9.780e-12
Identity = 44/109 (40.37%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:   46 RHGAASLLALWCTINQFREGHS-NSAVSCPSETLLCLAEDDCSSCLTALQETS-DTINPVFADCNVLFDSVCTFAANNGCNVANPLLEDYAACVADEEFGCPGFVSCAD 366
            R  A +LLAL      F  G   +S + CP +   CL +D+CSSCL ALQE     +   F  C  L+  VC  A   GCN  N  L ++  CVAD+ +GC  F +CAD
Sbjct:   16 RQLATALLALVALNACFDVGAGFSSGIPCPVDLFSCLGDDECSSCLDALQENDLPILGGDFELCGDLYAGVCAAAEAVGCNTDNEDLVEFLTCVADDSYGCGDFTTCAD 124
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6123.16810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KAJ7_9PHAE1.520e-10288.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMI0_ECTSI3.290e-9279.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K763_9PHAE1.660e-1341.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK8_ECTSI9.780e-1240.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6123contigEcto-sp13_S_contig6123:5343..5954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size612
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_002820.1
Cds size594
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463853.7279441-CDS-Ecto-sp13_S_contig6123:5342..59361681463853.7279441-CDS-Ecto-sp13_S_contig6123:5342..5936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6123 5343..5936 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463853.737984-UTR-Ecto-sp13_S_contig6123:5936..59541681463853.737984-UTR-Ecto-sp13_S_contig6123:5936..5954Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6123 5937..5954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6123.16810.1prot_Ecto-sp13_S_contig6123.16810.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6123 5343..5936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6123.16810.1

>prot_Ecto-sp13_S_contig6123.16810.1 ID=prot_Ecto-sp13_S_contig6123.16810.1|Name=mRNA_Ecto-sp13_S_contig6123.16810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
MMPMTRTKLRHGAASLLALWCTINQFREGHSNSAVSCPSETLLCLAEDDC
SSCLTALQETSDTINPVFADCNVLFDSVCTFAANNGCNVANPLLEDYAAC
VADEEFGCPGFVSCADANSAAGTASPTPAVATSAPTAVTPAPTAGTTEDV
SVTSPPSGSDAAGEAGSASSGVAHTAVAGSVQTTLAVVCGLAFLLSA*
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mRNA from alignment at Ecto-sp13_S_contig6123:5343..5954-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6123.16810.1 ID=mRNA_Ecto-sp13_S_contig6123.16810.1|Name=mRNA_Ecto-sp13_S_contig6123.16810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6123:5343..5954- (Ectocarpus species13 EcNAP12_S_4_19m)
GATCCCGGCAAGTGTAGTATGATGCCGATGACGCGCACGAAGCTTCGCCA
TGGCGCGGCGTCTCTGCTAGCATTGTGGTGCACCATCAACCAGTTCCGCG
AAGGGCACTCTAACAGTGCCGTCAGTTGTCCGTCGGAGACGCTCTTGTGT
CTTGCGGAGGACGACTGCAGCTCCTGCCTGACCGCCCTGCAGGAGACGAG
CGACACCATTAACCCAGTTTTCGCAGACTGCAACGTTCTGTTCGATTCCG
TTTGCACATTTGCTGCGAACAACGGCTGCAACGTGGCCAACCCCCTCCTC
GAGGATTACGCGGCGTGCGTTGCGGACGAAGAGTTTGGTTGCCCAGGCTT
TGTTTCGTGCGCCGATGCCAACAGTGCCGCGGGCACAGCTTCCCCCACCC
CTGCTGTTGCAACGTCCGCACCCACTGCTGTAACCCCCGCGCCGACTGCT
GGTACCACCGAAGACGTCAGTGTGACATCCCCGCCGTCTGGGTCGGACGC
TGCTGGCGAAGCGGGATCTGCCTCTAGCGGGGTTGCTCACACTGCTGTTG
CTGGATCAGTGCAAACCACCCTAGCCGTGGTGTGTGGACTTGCATTCCTC
TTGTCTGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6123:5343..5954-

>mRNA_Ecto-sp13_S_contig6123.16810.1 ID=mRNA_Ecto-sp13_S_contig6123.16810.1|Name=mRNA_Ecto-sp13_S_contig6123.16810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6123:5343..5954- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCCGATGACGCGCACGAAGCTTCGCCATGGCGCGGCGTCTCTGCT
AGCATTGTGGTGCACCATCAACCAGTTCCGCGAAGGGCACTCTAACAGTG
CCGTCAGTTGTCCGTCGGAGACGCTCTTGTGTCTTGCGGAGGACGACTGC
AGCTCCTGCCTGACCGCCCTGCAGGAGACGAGCGACACCATTAACCCAGT
TTTCGCAGACTGCAACGTTCTGTTCGATTCCGTTTGCACATTTGCTGCGA
ACAACGGCTGCAACGTGGCCAACCCCCTCCTCGAGGATTACGCGGCGTGC
GTTGCGGACGAAGAGTTTGGTTGCCCAGGCTTTGTTTCGTGCGCCGATGC
CAACAGTGCCGCGGGCACAGCTTCCCCCACCCCTGCTGTTGCAACGTCCG
CACCCACTGCTGTAACCCCCGCGCCGACTGCTGGTACCACCGAAGACGTC
AGTGTGACATCCCCGCCGTCTGGGTCGGACGCTGCTGGCGAAGCGGGATC
TGCCTCTAGCGGGGTTGCTCACACTGCTGTTGCTGGATCAGTGCAAACCA
CCCTAGCCGTGGTGTGTGGACTTGCATTCCTCTTGTCTGCGTAA
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