mRNA_Ecto-sp13_S_contig6123.16809.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6123.16809.1
Unique NamemRNA_Ecto-sp13_S_contig6123.16809.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6123.16809.1 vs. uniprot
Match: D8LMI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMI1_ECTSI)

HSP 1 Score: 279 bits (713), Expect = 6.250e-88
Identity = 136/153 (88.89%), Postives = 142/153 (92.81%), Query Frame = 1 
Query:    1 MIEPVTMIVDTPLWKVMAGVTNPSGTREQEQRRLRGCWLQAAVRHANITAKITNGLMASLKSSDDNLRGLEQQGPPFLPLHVAASQGMTDAGRVVLERARNRQSSQLNDAVNMPDATLGCTPLHWAAMMNRVDFMLFLLDHGADVDSRDFAGR 459
            MIEPVTMIVDTP+W V AGV NP+GT EQEQ+RLRGCWLQAA RHANITAKITN L+  L+SSDDNLRGLEQQGPPFLPLHVAASQGMTDAGRVVLERARN QSSQLND VNMPDATLGCTPLHWAAM+NRVDFML LLDHGADVDSRDFAGR
Sbjct:    1 MIEPVTMIVDTPVWGVTAGVMNPTGTHEQEQQRLRGCWLQAAARHANITAKITNALVIRLESSDDNLRGLEQQGPPFLPLHVAASQGMTDAGRVVLERARNHQSSQLNDVVNMPDATLGCTPLHWAAMLNRVDFMLLLLDHGADVDSRDFAGR 153
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BLAST of mRNA_Ecto-sp13_S_contig6123.16809.1 vs. uniprot
Match: A0A6H5KCU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU4_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.180e-19
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 MIEPVTMIVDTPLWKVMAGVTNPSGTRE--QEQRRLRGCWLQAAVRHANITAKITNGLMA 174
            MIEPVTMIVDTP W V AGV NPSGT E  QEQ+R R CWLQAA RHAN+TAKITNGL+A
Sbjct:    1 MIEPVTMIVDTPAWGVTAGVMNPSGTHEHEQEQQRHRRCWLQAAARHANVTAKITNGLVA 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6123.16809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMI1_ECTSI6.250e-8888.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCU4_9PHAE3.180e-1978.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6123contigEcto-sp13_S_contig6123:48..2545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score281.6
Seed ortholog evalue3.8e-73
Seed eggNOG ortholog2880.D8LMI1
Model size1353
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-05_002830.1
Cds size771
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463853.6644132-UTR-Ecto-sp13_S_contig6123:47..6291681463853.6644132-UTR-Ecto-sp13_S_contig6123:47..629Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6123 48..629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463853.6749616-CDS-Ecto-sp13_S_contig6123:629..8471681463853.6749616-CDS-Ecto-sp13_S_contig6123:629..847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6123 630..847 -
1681463853.6882122-CDS-Ecto-sp13_S_contig6123:1640..18841681463853.6882122-CDS-Ecto-sp13_S_contig6123:1640..1884Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6123 1641..1884 -
1681463853.6988168-CDS-Ecto-sp13_S_contig6123:2236..25451681463853.6988168-CDS-Ecto-sp13_S_contig6123:2236..2545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6123 2237..2545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6123.16809.1prot_Ecto-sp13_S_contig6123.16809.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6123 630..2545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6123.16809.1

>prot_Ecto-sp13_S_contig6123.16809.1 ID=prot_Ecto-sp13_S_contig6123.16809.1|Name=mRNA_Ecto-sp13_S_contig6123.16809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
MIEPVTMIVDTPLWKVMAGVTNPSGTREQEQRRLRGCWLQAAVRHANITA
KITNGLMASLKSSDDNLRGLEQQGPPFLPLHVAASQGMTDAGRVVLERAR
NRQSSQLNDAVNMPDATLGCTPLHWAAMMNRVDFMLFLLDHGADVDSRDF
AGRTPLFSCAAFGGVEAAALLLGRNADENAKDSRGLTPLHAAAAGGHLEV
ADELISAGADVRRQAFVGSMPRHVAEREGHASMVELLANAARSFERGGFF
ESVSET*
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mRNA from alignment at Ecto-sp13_S_contig6123:48..2545-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6123.16809.1 ID=mRNA_Ecto-sp13_S_contig6123.16809.1|Name=mRNA_Ecto-sp13_S_contig6123.16809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6123:48..2545- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGAACCCGTGACAATGATCGTGGACACGCCCTTGTGGAAAGTCAT
GGCTGGTGTAACGAACCCGTCAGGGACCCGCGAGCAGGAGCAGCGGCGGC
TTCGTGGGTGCTGGCTGCAAGCCGCCGTTAGGCACGCTAACATCACGGCC
AAGATCACGAACGGTCTAATGGCAAGTCTTAAATCGTCCGATGACAACCT
ACGAGGACTGGAGCAGCAGGGGCCTCCCTTCCTGCCTCTACACGTTGCTG
CCTCACAGGGCATGACTGACGCGGGAAGGGTTGTTCTGGAGAGAGCACGC
AACCGTCAGGTGAAAAGATAGCGATCTCACGAAGAGGTACAAGACATGGC
GTTTGTTTGTAGACTACGGAGACTATCTAGTAAGCACATGACGGTCATCA
TGATGATTTTTTCCCCCGCCGAGGCGTCTATTTAGCGCGCGTGTATGCAA
TTTATAGCGAATCATGTGCCCACAAACCCATGTAGGGACGTGCGAAATGT
GCCGCGTGTGCGTGTTCCATGATTTTACACAGCACGTCAAAAATTTTCCG
AGTACAGGTCGCCCTGGGCCTCCAGGTTCGCAACCCACAATATCAACAGC
GCTGGCAACCCCCCCCCCCCGCTTCTTCCCTCCCCGCCTCACATTCACGC
AACGCTTCCAGTCGAGCCAACTGAACGACGCGGTCAACATGCCCGACGCT
ACGCTCGGATGCACCCCGCTCCACTGGGCGGCGATGATGAACCGGGTCGA
TTTCATGCTCTTTCTGCTTGATCACGGGGCCGACGTCGATAGCCGGGACT
TCGCGGGCCGTACGCCATTGTTTTCTTGCGCTGCCTTCGGTGGGGTCGAA
GCCGCCGCCCTCTTGCTAGGAAGGAATGCTGACGAAAATGCGAAAGATTC
CAGAGGTAGGCACGAGCTGTGTTGGCCGGTCCTGCGTTTGGAAGCGAGAC
TTGACTTCAATACCTGACGTAACCACAAAACCTTGTATTTGCTGAGCCTG
TTACCCACCTGGGAAGTATCGTCGTATGCTATAACGAAAGCAGTAGAAAC
ACAGGTAGGTTATGTTCCACAATGACTTAGTTGCTACTGCTGCAGTTGTC
CTGGTCTCTGTGGCATTTCTGTGTTCGTTCGTATTTTTAATTTGTTTAAA
GAACATTATTGACGATTGTAGTAAGAGGAAATGCTGACATTCAAGCTTTA
CAGAACGGTATCTAATGGCATCTTGTGTAGCGTCTGTCTTGCCCCTCCAA
GTATTTCACTGGGCCCTCTTTTCAACTGTAATCATCTTAAATCTTACACG
CGGCGTGTCCATTTCTTTGTTTAACAGCCGAATACGCATGTGTACAGCAA
CACACAAGAAGCAACTCAACAATCACACGCCTTCCTCCTTGAAAATCGAC
TCTTGTCGTACATGTAAGCAGCTCAGTCGACGCGTCAGAGCATAGAGATG
AAATGTACGACGCGTATCTCCTTGATCCCGATCGGGTGCGTGGAAGTATC
GGCTCGGTCGCAATCTGCTTGGTCTCAGCTGTATGACCCCCCCATCCTGC
GACAGGTAAAAACGGCCATCAGTAGCAAAACTGGAAAAAGAAGTTACTGG
ATGAAAAACAACATAGATACCCCGCGCTCCAGAAACCTCGCCATATGACA
CTCGCTAACTATTCTCACGTTCCCGCCCCTCCCACCCCCCTCCTCCAGGC
CTAACCCCGCTCCACGCCGCTGCTGCCGGGGGACACCTAGAAGTGGCCGA
CGAGCTCATCTCTGCCGGGGCAGATGTCCGAAGGCAAGCATTCGTTGGAT
CCATGCCGAGGCACGTGGCCGAAAGGGAGGGTCATGCGTCCATGGTGGAA
CTCCTTGCCAACGCTGCTCGGTCTTTCGAACGAGGTGGGTTCTTCGAAAG
TGTGTCGGAAACATGAGGGAAGGATGGTTGGTATTTTGGTGGTGCGGGAT
ACACCATCGTGGTGTGATGGGTAGTGCGGAGAGGCATTGATCCTTTGTAG
TGCACATCAGATTGTCCAGCACCGAACACCTCAAAAGCAAACGCAATGCA
GATCATGTTGTAGCACTGTTGTGAGCTTGTAGTCTAGTGGTGACGTCCCT
CCTCCCAATGTCGGCTATCTTACTCGGCGCTCTATACGTGGATTATTCTG
ATATGGCTGCCAGTGGATTCAAAACAGAGCGTTGCCGTAGTCCGCTCCCT
CACCCTTGGCTTGGCTGGCTCTCGAGCGCCGTGAATCCACTAGAATCGTG
GCAACCGTGCGCCACGATATGGTAAAACCTCTTTCAGACCACTCCCCAAC
GCACTTCATGTTGCGTTTGCCCTCTGCACGACCACATCACAAGTATTGCT
ATGGATTATTTGTTTGAGCGTAGGCTATGCGAAAATTTGTGGTCCTGGTC
TACTTGACCCCTTTGCTAACCTGTGAGACTTGAGAACGTTCATGGTGTCC
GCGAATACGATCGGTATTGGATGGAAGAGGACTACGCTGATCATGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6123:48..2545-

>mRNA_Ecto-sp13_S_contig6123.16809.1 ID=mRNA_Ecto-sp13_S_contig6123.16809.1|Name=mRNA_Ecto-sp13_S_contig6123.16809.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6123:48..2545- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGAACCCGTGACAATGATCGTGGACACGCCCTTGTGGAAAGTCAT
GGCTGGTGTAACGAACCCGTCAGGGACCCGCGAGCAGGAGCAGCGGCGGC
TTCGTGGGTGCTGGCTGCAAGCCGCCGTTAGGCACGCTAACATCACGGCC
AAGATCACGAACGGTCTAATGGCAAGTCTTAAATCGTCCGATGACAACCT
ACGAGGACTGGAGCAGCAGGGGCCTCCCTTCCTGCCTCTACACGTTGCTG
CCTCACAGGGCATGACTGACGCGGGAAGGGTTGTTCTGGAGAGAGCACGC
AACCGTCAGTCGAGCCAACTGAACGACGCGGTCAACATGCCCGACGCTAC
GCTCGGATGCACCCCGCTCCACTGGGCGGCGATGATGAACCGGGTCGATT
TCATGCTCTTTCTGCTTGATCACGGGGCCGACGTCGATAGCCGGGACTTC
GCGGGCCGTACGCCATTGTTTTCTTGCGCTGCCTTCGGTGGGGTCGAAGC
CGCCGCCCTCTTGCTAGGAAGGAATGCTGACGAAAATGCGAAAGATTCCA
GAGGCCTAACCCCGCTCCACGCCGCTGCTGCCGGGGGACACCTAGAAGTG
GCCGACGAGCTCATCTCTGCCGGGGCAGATGTCCGAAGGCAAGCATTCGT
TGGATCCATGCCGAGGCACGTGGCCGAAAGGGAGGGTCATGCGTCCATGG
TGGAACTCCTTGCCAACGCTGCTCGGTCTTTCGAACGAGGTGGGTTCTTC
GAAAGTGTGTCGGAAACATGA
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