prot_Ecto-sp13_S_contig6121.16807.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6121.16807.1
Unique Nameprot_Ecto-sp13_S_contig6121.16807.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length106
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6121.16807.1 vs. uniprot
Match: D8LGN7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN7_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 6.550e-48
Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 0 
Query:   15 TASSSTGDAIDRLLTTECTPAKAVFCPKQTTCRPGTRGYTCEARTAPGPTPHGKPKAGGETCGAFTDIEGIVGRTAKGAACCPAPLLRASSK 106
            TASSSTGDA DRLLTTECTPAKAVFCPKQT+C PGTRGYTCEARTAPGPTPH K K GGETCG FTDIEG VG+TAKG ACCPAPLLRASSK
Sbjct:  184 TASSSTGDANDRLLTTECTPAKAVFCPKQTSCCPGTRGYTCEARTAPGPTPHRKSKPGGETCGVFTDIEGFVGKTAKGTACCPAPLLRASSK 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6121.16807.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGN7_ECTSI6.550e-4889.13Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..106
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6121contigEcto-sp13_S_contig6121:6481..7841 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6121.16807.1mRNA_Ecto-sp13_S_contig6121.16807.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6121 6481..7841 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6121.16807.1 ID=prot_Ecto-sp13_S_contig6121.16807.1|Name=mRNA_Ecto-sp13_S_contig6121.16807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
SSLRCVAGAFAAFTTASSSTGDAIDRLLTTECTPAKAVFCPKQTTCRPGT
RGYTCEARTAPGPTPHGKPKAGGETCGAFTDIEGIVGRTAKGAACCPAPL
LRASSK
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