mRNA_Ecto-sp13_S_contig6121.16807.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6121.16807.1
Unique NamemRNA_Ecto-sp13_S_contig6121.16807.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6121.16807.1 vs. uniprot
Match: D8LGN7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN7_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 6.550e-48
Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 1 
Query:   43 TASSSTGDAIDRLLTTECTPAKAVFCPKQTTCRPGTRGYTCEARTAPGPTPHGKPKAGGETCGAFTDIEGIVGRTAKGAACCPAPLLRASSK 318
            TASSSTGDA DRLLTTECTPAKAVFCPKQT+C PGTRGYTCEARTAPGPTPH K K GGETCG FTDIEG VG+TAKG ACCPAPLLRASSK
Sbjct:  184 TASSSTGDANDRLLTTECTPAKAVFCPKQTSCCPGTRGYTCEARTAPGPTPHRKSKPGGETCGVFTDIEGFVGKTAKGTACCPAPLLRASSK 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6121.16807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGN7_ECTSI6.550e-4889.13Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6121contigEcto-sp13_S_contig6121:6481..7841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score165.2
Seed ortholog evalue1.6e-38
Seed eggNOG ortholog2880.D8LGN7
Model size318
KEGG koko:K16351
KEGG Pathwayko04360,ko04514,map04360,map04514
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-10_002930.1
Cds size318
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463853.5171747-CDS-Ecto-sp13_S_contig6121:6480..66461681463853.5171747-CDS-Ecto-sp13_S_contig6121:6480..6646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6121 6481..6646 +
1681463853.5281203-CDS-Ecto-sp13_S_contig6121:7048..70961681463853.5281203-CDS-Ecto-sp13_S_contig6121:7048..7096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6121 7049..7096 +
1681463853.5371797-CDS-Ecto-sp13_S_contig6121:7436..75131681463853.5371797-CDS-Ecto-sp13_S_contig6121:7436..7513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6121 7437..7513 +
1681463853.546168-CDS-Ecto-sp13_S_contig6121:7814..78411681463853.546168-CDS-Ecto-sp13_S_contig6121:7814..7841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6121 7815..7841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6121.16807.1prot_Ecto-sp13_S_contig6121.16807.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6121 6481..7841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6121.16807.1

>prot_Ecto-sp13_S_contig6121.16807.1 ID=prot_Ecto-sp13_S_contig6121.16807.1|Name=mRNA_Ecto-sp13_S_contig6121.16807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
SSLRCVAGAFAAFTTASSSTGDAIDRLLTTECTPAKAVFCPKQTTCRPGT
RGYTCEARTAPGPTPHGKPKAGGETCGAFTDIEGIVGRTAKGAACCPAPL
LRASSK
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mRNA from alignment at Ecto-sp13_S_contig6121:6481..7841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6121.16807.1 ID=mRNA_Ecto-sp13_S_contig6121.16807.1|Name=mRNA_Ecto-sp13_S_contig6121.16807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1361bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6121:6481..7841+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCATTGCGTTGCGTTGCTGGCGCGTTTGCGGCATTCACAACGGCTTC
CTCCTCCACTGGTGATGCGATCGACCGCTTGCTGACGACAGAGTGCACCC
CTGCCAAGGCCGTCTTCTGCCCTAAGCAAACCACTTGCCGCCCTGGGACT
CGAGGTTACACTTGCGGTAAGCTCGTTTTCCGTCGCTCGTAGTCCCGATA
GATAGCGATAGCCCACTTGCTTTCTGAGTTAGCTTGCCGTCGAACTTGCA
ACAAACTTTCAACGGCCGTGGAAGGAGGCATTGATCCCGTGTTTACATCG
AGCGTGCATGACGCAAAACAAGACGAGAAGTACGGTGCGCATCAAGGCTT
CCTCTTCGGAAGCCGGCCAACGTTGGCTGTACTCTGTCTCTCTCGCGCAA
CCCCGTGTGTTGCACTTACGCCTCGCGCGTACTCGAAAGCGCTAGTCCAA
TCCACCCCCGACTGTATCGCACATCTTGCGTTGTTGTTTGGTTCGATGCG
CACCCCGGTGGGATTCCTCTCACGATCAACAAACCTCATGTTCGTCAATC
TGGGTATTCTATTTCCAGAAGCGAGGACAGCGCCTGGACCCACGCCCCAC
GGGAAGCCTAAAGCAGGTGGCCACGAATCAATATTGGCAAACGTTGCGGG
AAAATTTGCAATATTCCGTAGATGCTCTCGTTCGGCTCTTGTCTTCACAG
GCAATAACGGACGAAAAGTATGCATGTTCGTCGTGCGCCCGAAGCTGGCA
TGTCGACAGAGGAACTGCATCTCTCACCGGATGTCCGCACAGTGTTCCGT
AATTTGCACAACGACGCCGCGGAGCCCATTCGGCTGTACGTGCTTTGGAG
TGATGAACGATGGCCGCACTCACTCACGGTCTCGCAGTCGCGTGTGAGTA
CAACTCTACCTTCGACATGCGAGTATGAAACCCGACCGAATCGACACCTG
ACACAGGTGGAGAGACTTGCGGCGCTTTCACGGACATCGAAGGAATTGTC
GGCAGGACCGCCAAGGGCGCCGCCTGCTGCCCGGTAAGAGTTCACAATAT
GATAAGAGCTGTCGGATGACGTCCTCGATCAGACGACGAGTGCCCGGCAA
TTCTTCACCATCGTTTGTCATCAAAGTCGTTCCCGAGCCGTGAGATTGAT
TTCGTTTTTCACACCATCATTCGCACTTCGGTGACCCTCTTCGCGCGTGC
CCCTCCCTTTGTACAGCTCGCGTGCGGGAAGTGTGGTGGCAGAAGGTGTC
GCAGAAGGAGGCGGAACGGATTGACCAGGAATGAGTGCTGCGCTAGCGAC
GTCCTCAAACACAAGGGATCTTGCTCCGAACCAGGCGCCACTGCTCCGTG
CGTCATCGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6121:6481..7841+

>mRNA_Ecto-sp13_S_contig6121.16807.1 ID=mRNA_Ecto-sp13_S_contig6121.16807.1|Name=mRNA_Ecto-sp13_S_contig6121.16807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6121:6481..7841+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCATTGCGTTGCGTTGCTGGCGCGTTTGCGGCATTCACAACGGCTTC
CTCCTCCACTGGTGATGCGATCGACCGCTTGCTGACGACAGAGTGCACCC
CTGCCAAGGCCGTCTTCTGCCCTAAGCAAACCACTTGCCGCCCTGGGACT
CGAGGTTACACTTGCGAAGCGAGGACAGCGCCTGGACCCACGCCCCACGG
GAAGCCTAAAGCAGGTGGAGAGACTTGCGGCGCTTTCACGGACATCGAAG
GAATTGTCGGCAGGACCGCCAAGGGCGCCGCCTGCTGCCCGGCGCCACTG
CTCCGTGCGTCATCGAAG
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