prot_Ecto-sp13_S_contig6121.16806.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6121.16806.1
Unique Nameprot_Ecto-sp13_S_contig6121.16806.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length184
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6121.16806.1 vs. uniprot
Match: D8LGN7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN7_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 5.250e-79
Identity = 161/183 (87.98%), Postives = 164/183 (89.62%), Query Frame = 0 
Query:    1 VRPSICYASIVFTSTAESSDLSQCSGFKKIPVGIFKDLPALEKLMVGGVDIRTLEVGVFDDVAGSLRELHVQFCPELTWLPADLFRGLSGLTYLKIQNVXXXXXXXXXXXQDTTEVTELDLSGNGLTALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQNMWLHGDGMFNMQCLPDR 183
            +RPSI  ASI FTS AESSDLSQCSGF  IP GIFKDLPALEKLMVGGV+IRTLEVGVFDDVAGSLR LHVQFCPELTWLPADLFRGLSGLTYLKIQN+           QDTTEVTELDLSGNGLTALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQNMWLHGDGMFNMQCLPDR
Sbjct:    1 MRPSISSASIAFTSIAESSDLSQCSGFTTIPAGIFKDLPALEKLMVGGVEIRTLEVGVFDDVAGSLRALHVQFCPELTWLPADLFRGLSGLTYLKIQNIPKLRSIPVGLFQDTTEVTELDLSGNGLTALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQNMWLHGDGMFNMQCLPDR 183
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6121.16806.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGN7_ECTSI5.250e-7987.98Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 88..112
e-value: 110.0
score: 4.8
coord: 113..136
e-value: 14.0
score: 12.1
coord: 38..61
e-value: 31.0
score: 9.3
coord: 137..160
e-value: 2.5
score: 17.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 9..181
e-value: 1.4E-32
score: 114.7
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 115..172
e-value: 2.7E-10
score: 39.8
NoneNo IPR availablePANTHERPTHR45842:SF12INSULIN LIKE GROWTH FACTOR BINDING PROTEIN ACID LABILE SUBUNITcoord: 27..124
NoneNo IPR availablePANTHERPTHR45842FAMILY NOT NAMEDcoord: 27..124
NoneNo IPR availablePANTHERPTHR45842:SF12INSULIN LIKE GROWTH FACTOR BINDING PROTEIN ACID LABILE SUBUNITcoord: 79..173
NoneNo IPR availablePANTHERPTHR45842FAMILY NOT NAMEDcoord: 79..173
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 20..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6121contigEcto-sp13_S_contig6121:3229..6039 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6121.16806.1mRNA_Ecto-sp13_S_contig6121.16806.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6121 3229..6039 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6121.16806.1 ID=prot_Ecto-sp13_S_contig6121.16806.1|Name=mRNA_Ecto-sp13_S_contig6121.16806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
VRPSICYASIVFTSTAESSDLSQCSGFKKIPVGIFKDLPALEKLMVGGVD
IRTLEVGVFDDVAGSLRELHVQFCPELTWLPADLFRGLSGLTYLKIQNVP
KLRSIPVGLFQDTTEVTELDLSGNGLTALQLGTFHGLTKVVTLPLQYNSL
TTLPASIFEPLTSLQNMWLHGDGMFNMQCLPDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt