mRNA_Ecto-sp13_S_contig6121.16806.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6121.16806.1
Unique NamemRNA_Ecto-sp13_S_contig6121.16806.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6121.16806.1 vs. uniprot
Match: D8LGN7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGN7_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 5.250e-79
Identity = 161/183 (87.98%), Postives = 164/183 (89.62%), Query Frame = 1 
Query:    1 VRPSICYASIVFTSTAESSDLSQCSGFKKIPVGIFKDLPALEKLMVGGVDIRTLEVGVFDDVAGSLRELHVQFCPELTWLPADLFRGLSGLTYLKIQNVXXXXXXXXXXXQDTTEVTELDLSGNGLTALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQNMWLHGDGMFNMQCLPDR 549
            +RPSI  ASI FTS AESSDLSQCSGF  IP GIFKDLPALEKLMVGGV+IRTLEVGVFDDVAGSLR LHVQFCPELTWLPADLFRGLSGLTYLKIQN+           QDTTEVTELDLSGNGLTALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQNMWLHGDGMFNMQCLPDR
Sbjct:    1 MRPSISSASIAFTSIAESSDLSQCSGFTTIPAGIFKDLPALEKLMVGGVEIRTLEVGVFDDVAGSLRALHVQFCPELTWLPADLFRGLSGLTYLKIQNIPKLRSIPVGLFQDTTEVTELDLSGNGLTALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLQNMWLHGDGMFNMQCLPDR 183
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6121.16806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGN7_ECTSI5.250e-7987.98Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6121contigEcto-sp13_S_contig6121:3229..6039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score249.6
Seed ortholog evalue1.1e-63
Seed eggNOG ortholog2880.D8LGN7
Model size552
KEGG koko:K16351
KEGG Pathwayko04360,ko04514,map04360,map04514
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size552
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6121.16806.1prot_Ecto-sp13_S_contig6121.16806.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6121 3229..6039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463853.4225583-CDS-Ecto-sp13_S_contig6121:3228..33591681463853.4225583-CDS-Ecto-sp13_S_contig6121:3228..3359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6121 3229..3359 +
1681463853.4387367-CDS-Ecto-sp13_S_contig6121:3717..37921681463853.4387367-CDS-Ecto-sp13_S_contig6121:3717..3792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6121 3718..3792 +
1681463853.448542-CDS-Ecto-sp13_S_contig6121:4157..42321681463853.448542-CDS-Ecto-sp13_S_contig6121:4157..4232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6121 4158..4232 +
1681463853.4574728-CDS-Ecto-sp13_S_contig6121:4416..44911681463853.4574728-CDS-Ecto-sp13_S_contig6121:4416..4491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6121 4417..4491 +
1681463853.4675696-CDS-Ecto-sp13_S_contig6121:4907..49791681463853.4675696-CDS-Ecto-sp13_S_contig6121:4907..4979Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6121 4908..4979 +
1681463853.4776182-CDS-Ecto-sp13_S_contig6121:5423..54951681463853.4776182-CDS-Ecto-sp13_S_contig6121:5423..5495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6121 5424..5495 +
1681463853.4880493-CDS-Ecto-sp13_S_contig6121:5987..60391681463853.4880493-CDS-Ecto-sp13_S_contig6121:5987..6039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6121 5988..6039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6121.16806.1

>prot_Ecto-sp13_S_contig6121.16806.1 ID=prot_Ecto-sp13_S_contig6121.16806.1|Name=mRNA_Ecto-sp13_S_contig6121.16806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
VRPSICYASIVFTSTAESSDLSQCSGFKKIPVGIFKDLPALEKLMVGGVD
IRTLEVGVFDDVAGSLRELHVQFCPELTWLPADLFRGLSGLTYLKIQNVP
KLRSIPVGLFQDTTEVTELDLSGNGLTALQLGTFHGLTKVVTLPLQYNSL
TTLPASIFEPLTSLQNMWLHGDGMFNMQCLPDR*
back to top

mRNA from alignment at Ecto-sp13_S_contig6121:3229..6039+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6121.16806.1 ID=mRNA_Ecto-sp13_S_contig6121.16806.1|Name=mRNA_Ecto-sp13_S_contig6121.16806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2811bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6121:3229..6039+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGTCCCTCGATTTGTTATGCGTCGATTGTGTTCACGTCGACCGCCGA
GAGCAGTGACTTGTCCCAGTGCTCAGGATTCAAGAAGATTCCAGTGGGAA
TCTTCAAAGATCTGCCGGCTTTGGAGAAACTGTAAGTGAAACGGGGCTTT
CTGTGTTCCCAATTGCAGATTATGTATAGCCACGCCTTCAGACAGCGGAG
GTCACCAATCCATTGCCGCCCATTCTTCGTGCAGTCTTGGTTATCCAGCT
CAACCAACACCTCTCACTCGGAAAACGTGTTCTCATCTCTGATTGACTGA
CCCCGCACATGTCCAGCTTGATCAATCATTGTCGAGGTTTGAGGCTCGCT
TCAGGTCGTTCGAAGTCTAGGCAGATTCGCCTTCATCGGCCTCCACACCA
ATATTTCACAAGGCCCTACGCTTATGACGAGCAATCGGAACCAATGATTT
TGCTTTTGGGCGAAATTCTGGGATGTGTTTATTCAACAGGATGGTAGGCG
GCGTCGACATTCGGACGCTTGAGGTCGGAGTCTTCGACGATGTCGCCGGC
TCGCTGCGTGAGCTGTGAGTTTCGTGCTTCAGGGGCGGTTCTCGTAGGAA
AAAAGACCGAAAATACCGCGTTCTCCCAACGCCCTTGCCTGCGGCGAATA
ACGGCTGTTGCTATATTCTCGCGATATCATGCGAAAAGAGTGATTTTTCT
CGACGTACTTTGGGAAGATATGTGACCCTCGAGAATGATCGCCTTCGAAA
TCAGTTTTGCTCGAACACGTTGTTGAAAACATCGACTACGAAAGTGCTTT
TCCTGCCGCCATTACTCATCTTACTCTGATTCATGTGCCTGTGAAAGTCA
ATGGGCATCTGCAGATGTCGTTGTTTGAAACATTTGGAACTCTCACTCTG
CAATTTTGGCCTTCTTTTTCTACCCTTAGGCACGTTCAGTTCTGCCCGGA
GCTGACTTGGCTGCCTGCGGACCTGTTCAGGGGTCTCTCTGGCCTAACCT
ATTTGTGAGTTCAGTGCTCCACCAGGCTTTGGAGGGCATAGCGCTAATAT
ACACATCTTCTTGTTCGCTGGGTTCTCACGCTACTGTTACACTTACTCAT
TGGCATCGGCAACACCGAGAAATGCATCCAAGGTATTGGGTGTTGATACC
TCCTCGCACATCACTATTCCCACGCCCACCATTGACAGGAAGATCCAGAA
CGTCCCGAAACTGCGTTCGATTCCCGTTGGACTGTTCCAGGACACCACGG
AAGTCACAGAGTTGTGAGTGGATGCTTATTCGAGTTTCAAGTGCGGCATG
TTTTACCTAACGGTTCATTCATTTTTCAGGTTCAAACTACAGAATCACAG
GACGTTGAGTGATTCTTTTCACACGGTTTTCACACGGACTTCTTCGGAAA
TCAACGAGGTATTGGAAATAGGCATACATGTACTGATGAAGATCTTCTAC
ACGGGAAACACAAAGCTGCGACACCTGCCATTTCGCCTCCACCCTCCTGG
ACTATCGCCTCGTTCTCTAGTGCGTACGCCTTACCACGCGTTGTTTGTTC
CCCGTCATGGGACTGATGATGAATAGTCGATGCGGAGACTATATGGAGGC
ACGAGATACAACACGCCGTGAATAAACAAGCTTTATTTGCATGCATTATG
TGCGCTCCTCGCTTGTTGTGTATTGGCAGAGATCTGAGTGGCAATGGCCT
GACCGCGCTGCAGCTTGGGACCTTCCATGGGCTTACCAAAGTCGTCACAT
TGTGAGTTCGCTCTTATTTTGTAGCCTTCACGAGGGAGTGACAAACGATG
ATTATGTCGCGCTTGAAGCTTCGACGTTCAGTCGATGTTGTCGCGTCGAG
GTGGCGCTTGGTAAGGTCGTACGGCGTTGTCGACAGTGGCTGGCGAATGG
ACGGGTATCCAGCAGTATGTGTTGCGGTACTTGGGGGTGCTGTCTTCGAG
TCGGTGAAACGGTTAAACGAGTCGTCGTCGATGCCATCAATGTATTTCCA
AACTCGTCAACTGCTTGTTGTGATCCTGGTATGCCACAACGTAGCCTTGT
GGCAGCTTCGATTACGGAAGGAGCATGGTCCACCTGTGTCCTCGACTTGA
TTTTACAACACAGTCGTGACCACCCATCCAATTGCTGCGTCTTTTGAATC
AACCGCCGCATTCGCCTCTTTTCGGCTTTCTCTTTTGTCGAATAGACCTC
TTCAGTACAACTCGCTCACGACCCTTCCTGCCAGCATCTTCGAGCCGCTG
ACATCGCTCCAGAACATGTAAGACCACCCCATCGTCGAAGCAAGTAAGTG
CTGCCTGCTTGATTGGTCGGTTTATCAGATGATCGACCTCTTCCTCTTGG
AAGAGAAGTTTTTGGTTAGAGAGAGCAACAGGAGACAGACAGTGAGAGAG
ATACAGAGGTTTGCTTCTTAGTGATGGAATAGAGGGCGGCGTCTTCGTGC
ATATTATTCCTTCCTGATGGTGCTCAATGACAAGATTTTTCGCGGTAGCC
GGTAGCGTCGTTTAAGCTACATAGTGCTGCCCCGCTGTTTCCTAGAACGT
CGACTTCATGACTCCACTTCTAACCCGTGAAAGCGCTACACCTGAGTTGC
CAATTGATATCGCTTGCAGTAGAGAGATTGTCTACCAAGTTTCCTGTTTA
CTGGCACCCTAGACCTCCCGGCGAGTATTGGCATCGCAAACATCCCGTCA
CGTCTCACCCAACCACTTCTTGTCCGTGCTTTTCGATTGGCATGGGGATT
TGGCGGCAGGTGGTTGCATGGTGACGGCATGTTCAACATGCAGTGCCTTC
CTGATAGGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6121:3229..6039+

>mRNA_Ecto-sp13_S_contig6121.16806.1 ID=mRNA_Ecto-sp13_S_contig6121.16806.1|Name=mRNA_Ecto-sp13_S_contig6121.16806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6121:3229..6039+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCGTCCCTCGATTTGTTATGCGTCGATTGTGTTCACGTCGACCGCCGA
GAGCAGTGACTTGTCCCAGTGCTCAGGATTCAAGAAGATTCCAGTGGGAA
TCTTCAAAGATCTGCCGGCTTTGGAGAAACTGATGGTAGGCGGCGTCGAC
ATTCGGACGCTTGAGGTCGGAGTCTTCGACGATGTCGCCGGCTCGCTGCG
TGAGCTGCACGTTCAGTTCTGCCCGGAGCTGACTTGGCTGCCTGCGGACC
TGTTCAGGGGTCTCTCTGGCCTAACCTATTTGAAGATCCAGAACGTCCCG
AAACTGCGTTCGATTCCCGTTGGACTGTTCCAGGACACCACGGAAGTCAC
AGAGTTAGATCTGAGTGGCAATGGCCTGACCGCGCTGCAGCTTGGGACCT
TCCATGGGCTTACCAAAGTCGTCACATTACCTCTTCAGTACAACTCGCTC
ACGACCCTTCCTGCCAGCATCTTCGAGCCGCTGACATCGCTCCAGAACAT
GTGGTTGCATGGTGACGGCATGTTCAACATGCAGTGCCTTCCTGATAGGT
AA
back to top