mRNA_Ecto-sp13_S_contig61203.16805.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61203.16805.1
Unique NamemRNA_Ecto-sp13_S_contig61203.16805.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig61203.16805.1 vs. uniprot
Match: D7FUW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUW4_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 5.800e-44
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1
Query:    1 KAALTSAAIGLTLAGPMVSLPGTASAGDKRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS 243
            KAALTSAAIGLTLAGPM+SLPGTASAGDKRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS
Sbjct:   83 KAALTSAAIGLTLAGPMLSLPGTASAGDKRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS 163          
BLAST of mRNA_Ecto-sp13_S_contig61203.16805.1 vs. uniprot
Match: A0A7S4I5U4_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I5U4_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 4.220e-21
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1
Query:   46 PMVSLPGTASAGDKRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS 243
            P+V+LP  A A DKRTVGEIS SGL+FKD L +EAF DPKV G+ LYLSDF RPV +KL  GD+FS
Sbjct:   31 PLVALPDAAFA-DKRTVGEISTSGLIFKDTLKIEAFDDPKVSGINLYLSDFERPVTEKLAKGDVFS 95          
BLAST of mRNA_Ecto-sp13_S_contig61203.16805.1 vs. uniprot
Match: A0A7S0E3R9_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E3R9_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 6.700e-20
Identity = 47/72 (65.28%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   31 LTLAGPMVSLPGTASAGD-KRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS 243
            L LA  +++ P  A+AGD KRTVGEI  SGLVFKD L VEAFSDPKV GV LYLSDF RP  +K   GD+FS
Sbjct:    8 LALAATLIATPFPANAGDDKRTVGEIQGSGLVFKDTLKVEAFSDPKVGGVQLYLSDFQRPATEKFAKGDLFS 79          
BLAST of mRNA_Ecto-sp13_S_contig61203.16805.1 vs. uniprot
Match: A0A7S1K3H2_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K3H2_9ALVE)

HSP 1 Score: 79.7 bits (195), Expect = 3.280e-17
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1
Query:   64 GTASAGDKRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS 243
            GTA A +KR VGEI+ SGL+FKD LNVEA+SDPKV+GVT+Y++DFARP+ ++    D FS
Sbjct:   26 GTAQAAEKRLVGEIAGSGLIFKDTLNVEAWSDPKVEGVTIYIADFARPITERFQK-DFFS 84          
BLAST of mRNA_Ecto-sp13_S_contig61203.16805.1 vs. uniprot
Match: A0A7S3H326_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H326_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.440e-17
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   82 DKRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS 243
            DKR VGEI ASG++FKD +NVE F DPKV+GV +YLSDF+R VAD++  GD FS
Sbjct:    2 DKRLVGEIPASGMIFKDTINVEEFDDPKVQGVNIYLSDFSRSVADRISKGDFFS 55          
BLAST of mRNA_Ecto-sp13_S_contig61203.16805.1 vs. uniprot
Match: A0A0G4FDW3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FDW3_VITBC)

HSP 1 Score: 80.5 bits (197), Expect = 4.010e-17
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:   64 GTASAGDKRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS 243
            GTA A +KR VGEI+ SGL+FKD LNVEA+SDPKV+GVT+Y++DFARP+ +++   D FS
Sbjct:   42 GTAQAAEKRLVGEIAGSGLIFKDTLNVEAWSDPKVEGVTIYIADFARPITERIQK-DFFS 100          
BLAST of mRNA_Ecto-sp13_S_contig61203.16805.1 vs. uniprot
Match: A0A1Q9F2P2_SYMMI (Uncharacterized protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9F2P2_SYMMI)

HSP 1 Score: 81.3 bits (199), Expect = 5.880e-17
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   19 AAIGLTLAGPMVSLPGTASAGDKRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS 243
            AA GL +   + ++   ASA  KR VGEI ASG +FKD +NVEAF DPKV GV+LY+SDF+R +AD++  GD FS
Sbjct:   73 AATGLAILLGLFAVLSPASAESKRVVGEIPASGFIFKDTINVEAFEDPKVSGVSLYISDFSRSMADRVSKGDFFS 147          
BLAST of mRNA_Ecto-sp13_S_contig61203.16805.1 vs. uniprot
Match: A0A0M0JVR6_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVR6_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 1.170e-16
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   46 PMVSLPGTASAGDKRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS 243
            P+ +LP  A   +KRTV EI+ SGLVFKD L +E F DPKV GV LYLSDF+RPV +KL +G++F+
Sbjct:   26 PLTALPAVAE--NKRTVAEITTSGLVFKDTLRIEEFDDPKVTGVQLYLSDFSRPVTEKLASGNLFA 89          
BLAST of mRNA_Ecto-sp13_S_contig61203.16805.1 vs. uniprot
Match: A0A812IZF1_9DINO (CreA protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812IZF1_9DINO)

HSP 1 Score: 81.3 bits (199), Expect = 1.530e-16
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   19 AAIGLTLAGPMVSLPGTASAGDKRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS 243
            AA GL +   + ++   ASA  KR VGEI ASG +FKD +NVEAF DPKV GV+LY+SDF+R +AD++  GD FS
Sbjct:  144 AATGLAILLGLFTVLAPASAESKRVVGEIPASGFIFKDTINVEAFEDPKVSGVSLYISDFSRSMADRVSKGDFFS 218          
BLAST of mRNA_Ecto-sp13_S_contig61203.16805.1 vs. uniprot
Match: A0A0G4FDA5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FDA5_VITBC)

HSP 1 Score: 82.0 bits (201), Expect = 1.720e-16
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1
Query:   46 PMVSLPGTASAGDKRTVGEISASGLVFKDKLNVEAFSDPKVKGVTLYLSDFARPVADKLMNGDIFS 243
            P V+  GTA A +KR VGEI+ SGL+FKD LNVEA+SDPKV+GVT+Y++DFARP+ ++    D FS
Sbjct:  252 PQVAQIGTAQAAEKRLVGEIAGSGLIFKDTLNVEAWSDPKVEGVTIYIADFARPITERFQK-DFFS 316          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61203.16805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUW4_ECTSI5.800e-4498.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4I5U4_9EUKA4.220e-2168.18Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S0E3R9_9EUKA6.700e-2065.28Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
A0A7S1K3H2_9ALVE3.280e-1763.33Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A7S3H326_9STRA3.440e-1766.67Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0G4FDW3_VITBC4.010e-1763.33Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A1Q9F2P2_SYMMI5.880e-1756.00Uncharacterized protein n=3 Tax=Symbiodinium TaxID... [more]
A0A0M0JVR6_9EUKA1.170e-1659.09Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A812IZF1_9DINO1.530e-1656.00CreA protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A0G4FDA5_VITBC1.720e-1660.61Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61203contigEcto-sp13_S_contig61203:73..814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score152.9
Seed ortholog evalue6.4e-35
Seed eggNOG ortholog2880.D7FUW4
Model size243
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.CreA protein
EggNOG OGs2S2V0@2759,COG3045@1
Cds size243
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463853.3767753-CDS-Ecto-sp13_S_contig61203:72..1861681463853.3767753-CDS-Ecto-sp13_S_contig61203:72..186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61203 73..186 -
1681463853.391246-CDS-Ecto-sp13_S_contig61203:685..8141681463853.391246-CDS-Ecto-sp13_S_contig61203:685..814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61203 686..814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61203.16805.1prot_Ecto-sp13_S_contig61203.16805.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61203 73..814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61203.16805.1

>prot_Ecto-sp13_S_contig61203.16805.1 ID=prot_Ecto-sp13_S_contig61203.16805.1|Name=mRNA_Ecto-sp13_S_contig61203.16805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
KAALTSAAIGLTLAGPMVSLPGTASAGDKRTVGEISASGLVFKDKLNVEA
FSDPKVKGVTLYLSDFARPVADKLMNGDIFS
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mRNA from alignment at Ecto-sp13_S_contig61203:73..814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61203.16805.1 ID=mRNA_Ecto-sp13_S_contig61203.16805.1|Name=mRNA_Ecto-sp13_S_contig61203.16805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=742bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61203:73..814- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCGGCATTAACGTCTGCAGCGATCGGGTTGACCCTTGCGGGGCCGAT GGTATCCCTTCCAGGCACGGCGAGCGCAGGGGACAAGAGGACGGTCGGGG AAATCTCTGCAAGCGGGTTGGTGTTTAAGGTGAGCAGACTGGCCGGCCGA GTTGACACACCAGCCATCGCGGTTATGTAGCTCTGACACGATCGGTATCG TAAGGCTCACGATTTTGATCGTACGGAACGTGCCGAGTGGGGCGATTTTT TTTAAAATTTACCATCCCGCGACTCCCTACGTGGCTTTTGAGCGTTGCTT CTACCCCCTACCCCACGTCGCCCCCTTCCGCGACTGGAAAACATCCCGGT CACTTTCGACCTGTTCACACCATAAGTACAACAGCGAAGGCGTGTTTCAG CTCCTATGGTCATCAAGGGCATACCCTTTCTCCTTCAGGGACTGCACCTG CCACGCAGGGATGCTGTACGCACTTGCTAAGAGGACCTTAGTTCCCACAT TTGTTTTGATTCCCGTACCTTAGTCACCATGAGCACGAGGAAAGGTTGAT AAAAGATATCTCATGCGTGTTTTGTCGGTTGACGTGTGAAACCGTTCGTG TGCCGCGGTGCGAACCCGTTGTCGACAGGACAAGCTTAACGTGGAGGCGT TTTCTGATCCCAAGGTGAAGGGAGTAACGCTCTATCTGTCGGATTTTGCC CGCCCGGTGGCAGATAAGCTCATGAACGGGGACATTTTTTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61203:73..814-

>mRNA_Ecto-sp13_S_contig61203.16805.1 ID=mRNA_Ecto-sp13_S_contig61203.16805.1|Name=mRNA_Ecto-sp13_S_contig61203.16805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61203:73..814- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCGGCATTAACGTCTGCAGCGATCGGGTTGACCCTTGCGGGGCCGAT
GGTATCCCTTCCAGGCACGGCGAGCGCAGGGGACAAGAGGACGGTCGGGG
AAATCTCTGCAAGCGGGTTGGTGTTTAAGGACAAGCTTAACGTGGAGGCG
TTTTCTGATCCCAAGGTGAAGGGAGTAACGCTCTATCTGTCGGATTTTGC
CCGCCCGGTGGCAGATAAGCTCATGAACGGGGACATTTTTTCA
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