mRNA_Ecto-sp13_S_contig61200.16804.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig61200.16804.1
Unique NamemRNA_Ecto-sp13_S_contig61200.16804.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig61200.16804.1 vs. uniprot
Match: D7G1R3_ECTSI (Putative nuclear LIM interactor-interacting protein, C terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R3_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 5.420e-30
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 QVIMVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVRDGIIR 168
            +VIMVDNSLDAIRYHLENGVHISSFYGDREDT+LLSTLDALKTLAPAADVRDGIIR
Sbjct:   14 KVIMVDNSLDAIRYHLENGVHISSFYGDREDTELLSTLDALKTLAPAADVRDGIIR 69
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BLAST of mRNA_Ecto-sp13_S_contig61200.16804.1 vs. uniprot
Match: A0A6H5JQQ2_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ2_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.440e-26
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 QVIMVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVRDGIIR 168
            +VIMVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVRD IIR
Sbjct:  366 KVIMVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVRDAIIR 421
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BLAST of mRNA_Ecto-sp13_S_contig61200.16804.1 vs. uniprot
Match: A0A1Y2C401_9FUNG (FCP1 homology domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2C401_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 7.690e-7
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 QVIMVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVR 153
            + I++DNS+ A  Y LENG+ I+S+Y DR D +LL  L+ L+TL  A DVR
Sbjct:  184 KTIIIDNSIYAFGYQLENGIPITSWYSDRNDRELLCVLEFLQTLIGAYDVR 234
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BLAST of mRNA_Ecto-sp13_S_contig61200.16804.1 vs. uniprot
Match: A0A1Y2CGJ0_9FUNG (FCP1 homology domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2CGJ0_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 1.460e-6
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 QVIMVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVR 153
            + I++DNS+ A  Y LENG+ I+S+Y D+ D +LL  L+ L+TL  A DVR
Sbjct:  189 KTIIIDNSIYAFGYQLENGIPITSWYSDKNDKELLCVLEFLQTLIEANDVR 239
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BLAST of mRNA_Ecto-sp13_S_contig61200.16804.1 vs. uniprot
Match: A0A1R2ALP1_9CILI (FCP1 homology domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ALP1_9CILI)

HSP 1 Score: 52.4 bits (124), Expect = 2.670e-6
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    4 VIMVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVRDGI 162
            +I+VDN+L +  + L+NG+ ISS+YGD+ D +L   ++ LK +  A DVRD +
Sbjct:  228 LILVDNTLLSFAFQLDNGIPISSWYGDKNDNELFKLINFLKIIKEAPDVRDQL 280
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BLAST of mRNA_Ecto-sp13_S_contig61200.16804.1 vs. uniprot
Match: A0A1Y1XNT3_9FUNG (FCP1 homology domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XNT3_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 2.930e-6
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 QVIMVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVR 153
            + I++DNS+ A  Y LENG+ I+S+Y D+ D +LL  L+ L+TL  A DVR
Sbjct:  342 KTIIIDNSIYAFGYQLENGIPITSWYSDKNDKELLCILEFLQTLIGAYDVR 392
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BLAST of mRNA_Ecto-sp13_S_contig61200.16804.1 vs. uniprot
Match: A0A1Y1VFC4_9FUNG (FCP1 homology domain-containing protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VFC4_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 3.410e-5
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 QVIMVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVR 153
            + I++DNS+ A  Y LENG+ I+S+Y D+ D +LL  L+ L+++    DVR
Sbjct:  182 KTIIIDNSIYAFGYQLENGIPITSWYSDKNDKELLCVLEFLESIVGVYDVR 232
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BLAST of mRNA_Ecto-sp13_S_contig61200.16804.1 vs. uniprot
Match: A0A4P9YP35_ROZAC (FCP1 homology domain-containing protein n=2 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A4P9YP35_ROZAC)

HSP 1 Score: 49.3 bits (116), Expect = 3.530e-5
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 QVIMVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVRDGI 162
            Q I+VDN+  +  + L NG+ I S+YG R+DT LLS L+ L  +    DVR  I
Sbjct:  281 QTIIVDNAPQSFGFQLSNGIPIESWYGARDDTQLLSVLEFLSDIVGVTDVRPTI 334
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BLAST of mRNA_Ecto-sp13_S_contig61200.16804.1 vs. uniprot
Match: L8GNS5_ACACA (NLI interacting factor (NIF) family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GNS5_ACACA)

HSP 1 Score: 48.9 bits (115), Expect = 3.950e-5
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   10 MVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVR 153
            +VDNS  A  YHL+NG+ I S++G+R D  LL+ +  L+ LA A DVR
Sbjct:  167 IVDNSPLAFAYHLDNGIPIESWFGERSDNHLLALMPFLRELARADDVR 214
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig61200.16804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G1R3_ECTSI5.420e-3096.43Putative nuclear LIM interactor-interacting protei... [more]
A0A6H5JQQ2_9PHAE1.440e-2696.43FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A1Y2C401_9FUNG7.690e-750.98FCP1 homology domain-containing protein n=1 Tax=Ne... [more]
A0A1Y2CGJ0_9FUNG1.460e-649.02FCP1 homology domain-containing protein n=1 Tax=Ne... [more]
A0A1R2ALP1_9CILI2.670e-643.40FCP1 homology domain-containing protein n=1 Tax=St... [more]
A0A1Y1XNT3_9FUNG2.930e-649.02FCP1 homology domain-containing protein n=1 Tax=An... [more]
A0A1Y1VFC4_9FUNG3.410e-543.14FCP1 homology domain-containing protein n=1 Tax=Pi... [more]
A0A4P9YP35_ROZAC3.530e-544.44FCP1 homology domain-containing protein n=2 Tax=Ro... [more]
L8GNS5_ACACA3.950e-550.00NLI interacting factor (NIF) family protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig61200contigEcto-sp13_S_contig61200:20..214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score107.1
Seed ortholog evalue3.1e-21
Seed eggNOG ortholog2880.D7G1R3
Preferred nameCTDSPL2
Model size195
KEGG koko:K17616
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030510,GO:0030514,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033157,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051171,GO:0051222,GO:0051223,GO:0051252,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090316,GO:0140096,GO:1901564,GO:1903506,GO:1903827,GO:1903829,GO:1904951,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
Ec32 ortholog descriptionputative nuclear LIM interactor-interacting protein, C terminal part
Ec32 orthologEc-17_000290.1
Cds size186
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463853.3318727-UTR-Ecto-sp13_S_contig61200:19..281681463853.3318727-UTR-Ecto-sp13_S_contig61200:19..28Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig61200 20..28 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463853.345718-CDS-Ecto-sp13_S_contig61200:28..2141681463853.345718-CDS-Ecto-sp13_S_contig61200:28..214Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig61200 29..214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig61200.16804.1prot_Ecto-sp13_S_contig61200.16804.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig61200 29..214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig61200.16804.1

>prot_Ecto-sp13_S_contig61200.16804.1 ID=prot_Ecto-sp13_S_contig61200.16804.1|Name=mRNA_Ecto-sp13_S_contig61200.16804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MVDNSLDAIRYHLENGVHISSFYGDREDTDLLSTLDALKTLAPAADVRDG
IIRYVCPPRVR*
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mRNA from alignment at Ecto-sp13_S_contig61200:20..214+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig61200.16804.1 ID=mRNA_Ecto-sp13_S_contig61200.16804.1|Name=mRNA_Ecto-sp13_S_contig61200.16804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61200:20..214+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCATTATGGTGGACAATTCTCTGGACGCAATTCGATACCATCTGGA
GAACGGCGTGCACATCTCCAGCTTCTACGGAGATCGCGAGGACACGGACC
TTCTGTCCACGCTCGATGCGCTCAAGACGCTGGCGCCCGCGGCGGACGTC
AGAGATGGTATTATCAGGTATGTTTGTCCTCCACGAGTTCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig61200:20..214+

>mRNA_Ecto-sp13_S_contig61200.16804.1 ID=mRNA_Ecto-sp13_S_contig61200.16804.1|Name=mRNA_Ecto-sp13_S_contig61200.16804.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig61200:20..214+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACAATTCTCTGGACGCAATTCGATACCATCTGGAGAACGGCGT
GCACATCTCCAGCTTCTACGGAGATCGCGAGGACACGGACCTTCTGTCCA
CGCTCGATGCGCTCAAGACGCTGGCGCCCGCGGCGGACGTCAGAGATGGT
ATTATCAGGTATGTTTGTCCTCCACGAGTTCGTTGA
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