mRNA_Ecto-sp13_S_contig6115.16797.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6115.16797.1
Unique NamemRNA_Ecto-sp13_S_contig6115.16797.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6115.16797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6115contigEcto-sp13_S_contig6115:2423..6047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1421
Hectar predicted targeting categoryother localisation
Exons4
Cds size1038
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6115.16797.1prot_Ecto-sp13_S_contig6115.16797.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6115 2668..5091 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463852.5757594-UTR-Ecto-sp13_S_contig6115:2422..26671681463852.5757594-UTR-Ecto-sp13_S_contig6115:2422..2667Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6115 2423..2667 -
1681463852.6195428-UTR-Ecto-sp13_S_contig6115:5091..51541681463852.6195428-UTR-Ecto-sp13_S_contig6115:5091..5154Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6115 5092..5154 -
1681463852.6299658-UTR-Ecto-sp13_S_contig6115:5972..60471681463852.6299658-UTR-Ecto-sp13_S_contig6115:5972..6047Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6115 5973..6047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463852.586608-CDS-Ecto-sp13_S_contig6115:2667..33261681463852.586608-CDS-Ecto-sp13_S_contig6115:2667..3326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6115 2668..3326 -
1681463852.5979-CDS-Ecto-sp13_S_contig6115:4365..46041681463852.5979-CDS-Ecto-sp13_S_contig6115:4365..4604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6115 4366..4604 -
1681463852.609066-CDS-Ecto-sp13_S_contig6115:4951..50911681463852.609066-CDS-Ecto-sp13_S_contig6115:4951..5091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6115 4952..5091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6115.16797.1

>prot_Ecto-sp13_S_contig6115.16797.1 ID=prot_Ecto-sp13_S_contig6115.16797.1|Name=mRNA_Ecto-sp13_S_contig6115.16797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp
MLFSNLFVKLRDFNAAVDRMTPEQRKCCAETFSRIAMGEPVGVPRSCWAD
GTNCPLMKGLGQPGNLHQTTQLDPAISKKQSWPNGHSCYAPRGILVFAST
SIFSLWMIRKVSRFMIRLLLARVPEPRALQSSLCRLVQMGMRTARHAAKV
VDWVFIVSVVCSLHCPTGVTPLDWSTLALGISGTSVVFLALGDVEKHLDS
PVLLRFLSSSYCGSTLAAEVARLPGFDWENFETLVLGFGGGGVWIVGLNN
IHLFCALSDIVTNPLVRLAAATAAAASTAIAAVVLFYMDKPGDSKSMEST
IMFYACASTSPLLLLFIRQVLPARLMERLRNSSVLTDVARLVCWR*
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mRNA from alignment at Ecto-sp13_S_contig6115:2423..6047-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6115.16797.1 ID=mRNA_Ecto-sp13_S_contig6115.16797.1|Name=mRNA_Ecto-sp13_S_contig6115.16797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3625bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6115:2423..6047- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGTGCTCTGTGGCTGCATCCACGTGACTGTTTTTCAACGGGCTTGTC
CGAATAAGCTACTAGGTTGGGTGAGGTAGGTGTCTGATGACAGGGAACTG
TTTGTGATGGGAGGGTGGCGATGAAAGGCAGCCGTTTGTGATGCAGAACT
CTCGATTGACTCCTGGAAGTATGCGGCGAGATTGCTCAATTTACGGTCGT
CCAAAGATCGCGCTCGCACGTGAGAACTTTTAGTTTCGGCCGAGGCTGAG
GTTCCTGTAATAGTCCCTCTCGTGGATAACAACTGCTCGCTTCATAGGTC
TTAGTGCAAGGGAGTCTCAACCGTACTCATAGCTTGTGCTCAATTTCTTT
GTTTTAACTATATCCTGGTGAGCTCGGTTTACCTGACGCGCTCCACATGT
AACAGCCCAACAGCTGTAGTCTCGACCATTTGTACTTTGAAAACATTCTC
TTTGAAACGCTACAGGATATTACTAGCTCAAATGAGGCTGTTGTCGTCAT
ATTGATGATCTTTAGCATGCGTCCCCTCAACAACTAAGCTGTATCTGAAG
TAGCGGATATCGAAAATCGGCTTCTTCGCTGAAAAATATCCACACTAAAA
TACTATTTGAAGATCCACAAGCATTCATCGCCCCACCCTCGTTGAGACGA
TTATAGAACTGCTGTGGATGCATGACGAACAAAGGACATCTCTACACCAT
CCCACGTGACATCAGGTGTAAGCCCATGTTGCTGCTGCAGGGGAAATACA
AGTATGCAGTTTACGTATTAAGTCTAGAAATCTGTGACGTAGTCTACACT
GTACATCCCGAGTTTGTTTGTTCTTGCGCACATTTTCGTTTTTTCGTCGA
ACGCTCCGGCTGCGTGCTCCTCGCCCGATCGTCTCGTTCCTAGGTGGTAC
GACAGAGGCGGCCATACCCAATCGGAGTTCACGTGCTACACAACAAATGC
ATCGAAATGCTGTTTAGCAATCTGTTTGTGAAACTCCGCGACTTCAATGC
GGCCGTCGATAGGATGACCCCAGAGCAACGAAAGTGTTGCGCGGAAACTT
TTTCCCGCATCGCGATGGGCGAACCCGTCGGCGTCCCCCGCAGTTGGTGA
GATGTGGCAACACTGCTTCTCCCGTTGCGAAAGAAAAATCATCCGGGTTG
CCCCGCTCGGTCTAGCATATGCAGGCGCGTACGCTTCACACGCAATATAT
CCGGGAATTCGCAAGGTTGCGGTTCCCAACTGGCCTTGACGTTACGGGCC
AGCTATGCCTTCGCCGTGAAGTCTTCCGGGGTAGTCTATGTGCTTATTGA
TCTTTGTGACGCGGCAGAGAATGTTACACAACGTTCCTCATCCTGAAACG
TCCCCCATCAATAAGTGCATTGCCTGTACGTCCCCGCCTTTCTCCCTGGC
TCTCTGCGTGCGTTCCTCCTTATTCACCCGAAATCCGCCGAAGCTGGGCG
GACGGAACTAATTGTCCTTTGATGAAAGGGCTAGGACAGCCCGGCAATCT
CCACCAAACAACACAGCTGGATCCGGCAATCTCCAAAAAGCAGAGCTGGC
CAAATGGCCACTCCTGCTACGCACCGCGAGGCATATTGGTATTTGCTTCA
ACATCAATCTTTTCCCTGTGGATGATACGGAAGGTTTCGCGTTTCATGAT
TAGGCTCCTTCTGGCTCGAGTCCCCGAACCACGTGAGTGAGCCACTGGCC
GCAAATATCATTTTTCTTTCCCGTGGGCAACTGACTTTGGTACCACAGGC
GTGTGACTCATGGCGTGCCCTTCAGTGACAAAAATGATGCATGTCTTCGA
CGAAATGAGTTTCGGCATAACACCACGTAATATGCCCAGCAAGAGTAGTG
ACGCCAGGCAGAAGGGTGTCGTCATTAGGTGTGTGTTTCTTCGCCCACCC
CCCCACCCTCCTAACTCAGAATTCTCTTCAGCTTGATAGGGTTAGTCTAG
GCAGCGCGTGTGTTCACATAAAGTGACTGCTACCAGAGAAAAAGCTCACC
TACTAGGGCAGGAGAGAAAATGGTGATGTTGTCAGGGTTTGCACGGTCAG
CTGTGCTCACCGAGTCATCCCACGATAGGGTGGGGGGGAAATGGAGCCGA
AATAACGGTGGAGACAGGCTACGCGGTTCGCGTAGCCTCTTGTATCTCTT
GGAATCGCTCATGTGTTCCGAATCTGATTTCGGGACAGGGACACCCATGC
CATTGGCTTCCGTTATGCAAAAATGTTTTTTGTCGTTGATCGTTTTTCGG
AGCTACGCGTCCGCTTAGCCCATGTTATCGGGGTGTACACCCTATCGTGG
GACGAGTCCACCGCCTTATCGGGCGAAGAATTACTTACAATAGGCCGACG
ATGGGACGAGAGGTAGCTGAAAGGGGCGGGGAATGCGTCATTTTGGAAAA
TGCGCTGTCCAAGCCATGTTGAGACTGTTGCCAGTCTCAAGAAACTGGCG
GAAGGGATTGCAGTCCGAGGTGCGGACAATAATGAAAGTCCCGGAGTGAT
GCAGTGTTACACGTTAACACAAAAGAACCCCAGCACAACCAAGAACGTGA
TGACGTTGAAGAGAACTACGTAAACGGATCCCAGGAAACCTCAGTTATTT
CAACATCATATGCCAAATCATTAGCAATTCATTTCTCCTTGAGCCTTCTG
TGCTAGTAACAAGAGCCCCCACCACTGATTGTCCAGGCCGGTTCTTGCTT
GTTTGCAATGAAAAAATCCAGGTGCCCTACAATCGTCGCTCTGCAGGCTT
GTTCAGATGGGCATGCGCACAGCCAGACATGCCGCCAAAGTCGTCGATTG
GGTGTTTATCGTATCGGTGGTGTGCAGCCTGCATTGCCCGACCGGCGTGA
CCCCATTGGACTGGTCGACACTCGCTCTCGGAATATCTGGCACTTCCGTC
GTCTTCCTCGCGCTCGGTGACGTCGAAAAACACTTGGACAGCCCGGTCCT
GCTTCGTTTTCTTTCCTCCAGCTACTGTGGATCCACCTTGGCGGCTGAAG
TCGCGCGACTCCCCGGCTTTGATTGGGAAAACTTCGAGACGCTGGTCCTT
GGTTTCGGTGGCGGAGGCGTCTGGATTGTCGGCCTCAACAACATACATCT
ATTCTGTGCACTCTCTGACATCGTGACAAATCCTTTGGTCCGACTGGCGG
CTGCAACGGCGGCGGCTGCTTCGACAGCGATTGCTGCGGTGGTGCTCTTC
TACATGGATAAGCCGGGAGACAGTAAATCGATGGAGTCGACAATCATGTT
TTACGCGTGTGCATCGACGTCGCCGCTTCTCTTGCTTTTCATCAGGCAGG
TACTTCCAGCCCGCCTTATGGAGCGCTTAAGGAACTCGTCAGTTTTGACG
GACGTTGCGCGCTTGGTTTGCTGGCGCTAGGGCTATCTTTGGGGTACACC
GTTTACACCGACAATTGACACCGATATCGTTCTCGTTGTTCCGTACTGAT
CCGGCATGCCTGTTGGCGAGAGTCGCTCTGGGTTAGAAGCTTTGTTTGAG
TGTGTGTATAAAGGTGGTACCTGCATGTTACGAGTTTACTATTGTGAGTG
TGCGTTTTTTTCCTTTTCCATCTGTTCAGGGCGGCAGTCGGCACGTTTCG
GAATACGATTGACGCAAGAGCCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6115:2423..6047-

>mRNA_Ecto-sp13_S_contig6115.16797.1 ID=mRNA_Ecto-sp13_S_contig6115.16797.1|Name=mRNA_Ecto-sp13_S_contig6115.16797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6115:2423..6047- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTTTAGCAATCTGTTTGTGAAACTCCGCGACTTCAATGCGGCCGT
CGATAGGATGACCCCAGAGCAACGAAAGTGTTGCGCGGAAACTTTTTCCC
GCATCGCGATGGGCGAACCCGTCGGCGTCCCCCGCAGTTGCTGGGCGGAC
GGAACTAATTGTCCTTTGATGAAAGGGCTAGGACAGCCCGGCAATCTCCA
CCAAACAACACAGCTGGATCCGGCAATCTCCAAAAAGCAGAGCTGGCCAA
ATGGCCACTCCTGCTACGCACCGCGAGGCATATTGGTATTTGCTTCAACA
TCAATCTTTTCCCTGTGGATGATACGGAAGGTTTCGCGTTTCATGATTAG
GCTCCTTCTGGCTCGAGTCCCCGAACCACGTGCCCTACAATCGTCGCTCT
GCAGGCTTGTTCAGATGGGCATGCGCACAGCCAGACATGCCGCCAAAGTC
GTCGATTGGGTGTTTATCGTATCGGTGGTGTGCAGCCTGCATTGCCCGAC
CGGCGTGACCCCATTGGACTGGTCGACACTCGCTCTCGGAATATCTGGCA
CTTCCGTCGTCTTCCTCGCGCTCGGTGACGTCGAAAAACACTTGGACAGC
CCGGTCCTGCTTCGTTTTCTTTCCTCCAGCTACTGTGGATCCACCTTGGC
GGCTGAAGTCGCGCGACTCCCCGGCTTTGATTGGGAAAACTTCGAGACGC
TGGTCCTTGGTTTCGGTGGCGGAGGCGTCTGGATTGTCGGCCTCAACAAC
ATACATCTATTCTGTGCACTCTCTGACATCGTGACAAATCCTTTGGTCCG
ACTGGCGGCTGCAACGGCGGCGGCTGCTTCGACAGCGATTGCTGCGGTGG
TGCTCTTCTACATGGATAAGCCGGGAGACAGTAAATCGATGGAGTCGACA
ATCATGTTTTACGCGTGTGCATCGACGTCGCCGCTTCTCTTGCTTTTCAT
CAGGCAGGTACTTCCAGCCCGCCTTATGGAGCGCTTAAGGAACTCGTCAG
TTTTGACGGACGTTGCGCGCTTGGTTTGCTGGCGCTAG
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