mRNA_Ecto-sp13_S_contig6112.16795.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6112.16795.1
Unique NamemRNA_Ecto-sp13_S_contig6112.16795.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6112.16795.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 9.590e-89
Identity = 240/252 (95.24%), Postives = 242/252 (96.03%), Query Frame = 1
Query:    4 QAFRNNSDTDDGGGDGATDLWRGSGLILAGNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGGRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRYDSVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRGGHRRVAEWIVAN 759
            +AFRN      GGGDGATDLWRGSGLILA NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWG RPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGC WNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRYD+VTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRG HRRVAEWIVAN
Sbjct:   30 RAFRNXXXXXXGGGDGATDLWRGSGLILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRYDNVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRGSHRRVAEWIVAN 281          
BLAST of mRNA_Ecto-sp13_S_contig6112.16795.1 vs. uniprot
Match: D7FH77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 5.880e-23
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   94 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGGRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLT 369
            N D+L  ++ FVA++ FLFF PV R WR AWG RP  T   T D + +QL+  F+ GL R  PELCAAIARLG+++LL  AR +GC W   T
Sbjct:   12 NPDILGCLISFVADESFLFFGPVCRDWRAAWGNRPTTTRIATSDLTPTQLQRGFDCGLTRTNPELCAAIARLGDVDLLELARDNGCRWGAST 103          
BLAST of mRNA_Ecto-sp13_S_contig6112.16795.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.050e-22
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   94 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGGRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVW 357
            N+D++  + +FV +KQFLFFA VSR+WR+AWG R  VTSWVT  ++  QL+YSF  GL RD  + C   AR GNL+LLR A   GC W
Sbjct:   22 NMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWATEQGCPW 109          
BLAST of mRNA_Ecto-sp13_S_contig6112.16795.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.180e-21
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   97 VDLLRSIVRFVAEKQFLFFAPVSRAWREAWGGRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 360
            VD++ ++  FV + Q+LFFA VSR WR+ WG RP VT  +T D+SV QL  SFE GL R    +C  +A LG L+LLR AR  GC WN
Sbjct:    7 VDIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRT-AAVCETVAGLGRLDLLRRARAMGCQWN 93          
BLAST of mRNA_Ecto-sp13_S_contig6112.16795.1 vs. uniprot
Match: D7FH78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.210e-20
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1
Query:   94 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGGRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 360
            N ++L  + +FV + QFLFFAPV++ WR AW  RP +T+ VT D++ SQL++SFE GLP+++  LCAA+ARLG L LL  A G+GC  N
Sbjct:  112 NRNILLCLAQFVPDNQFLFFAPVAKGWRAAWQ-RPTITAHVTPDTTTSQLQHSFECGLPQNQTGLCAALARLGKLNLLACAVGAGCPMN 199          
BLAST of mRNA_Ecto-sp13_S_contig6112.16795.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 3.480e-20
Identity = 47/88 (53.41%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   97 VDLLRSIVRFVAEKQFLFFAPVSRAWREAWGGRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 360
            VD++ ++  FV + Q+LFFA VSR WR+ WG RP VT  +T D+SVSQL  SFE GL R    +C  +A LG L+LLR AR  GC WN
Sbjct:    9 VDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRT-AAVCETVAGLGRLDLLRRARAMGCPWN 95          
BLAST of mRNA_Ecto-sp13_S_contig6112.16795.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.180e-19
Identity = 47/93 (50.54%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   82 ILAGNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGGRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 360
            ++  NV LL  +  FV + Q LFFA VSR WR+ WG RP VT  +T D+SV QL  SFE GL R    +C  +A LG L+LL+ AR  GC WN
Sbjct:   20 LVTANVYLLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRT-AAVCETVAGLGRLDLLQRARAMGCPWN 111          
BLAST of mRNA_Ecto-sp13_S_contig6112.16795.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.110e-18
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  100 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGGRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLT 369
            D+   +V FV  +QFLFFA V RAW+EAWG RP  T  VTED++V+QL  +F+ GL     ++C ++A+LG L+LL+ AR  GC WN +T
Sbjct:   10 DVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLI-ADVCTSVAKLGRLDLLQCARRHGCAWNEVT 98          
BLAST of mRNA_Ecto-sp13_S_contig6112.16795.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 7.710e-15
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  118 VRFVAEKQFLFFAPVSRAWREAWGGRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGS-GCVWNGLTFSEAA 384
            + FV  +Q+LFFA VSR WR+AW GRP  T  VT D+ V QL  SFE GL R R  +C  IA LG L+LL SAR    C W+  T S A+
Sbjct:    1 MEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAR-RSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYAS 89          
BLAST of mRNA_Ecto-sp13_S_contig6112.16795.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.730e-13
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  100 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGGRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSG-CVWNGLTFSEAA 384
            D++  ++ FV  +Q++FFA VSR WR+AW GRP  T   T D+ V QL  SF+ GL   R  +C  IA LG L+LL SAR    C W+  T S A+
Sbjct:    9 DIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLA-PRSTVCRDIAALGRLDLLVSAREQHECPWDEETCSCAS 103          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6112.16795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KPZ6_9PHAE9.590e-8995.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FH77_ECTSI5.880e-2352.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FH49_ECTSI1.050e-2254.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE8.180e-2152.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH78_ECTSI1.210e-2052.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMS7_ECTSI3.480e-2053.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0K8_9PHAE3.180e-1950.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8V2_ECTSI2.110e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8W5_ECTSI7.710e-1552.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM75_9PHAE1.730e-1345.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6112contigEcto-sp13_S_contig6112:7390..8151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score78.6
Seed ortholog evalue4.8e-12
Seed eggNOG ortholog2880.D7FJY0
Model size762
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2AMK4@1,2RZCC@2759
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-13_004050.1
Cds size762
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463852.4428496-CDS-Ecto-sp13_S_contig6112:7389..81511681463852.4428496-CDS-Ecto-sp13_S_contig6112:7389..8151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6112 7390..8151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6112.16795.1prot_Ecto-sp13_S_contig6112.16795.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6112 7390..8151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6112.16795.1

>prot_Ecto-sp13_S_contig6112.16795.1 ID=prot_Ecto-sp13_S_contig6112.16795.1|Name=mRNA_Ecto-sp13_S_contig6112.16795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MQAFRNNSDTDDGGGDGATDLWRGSGLILAGNVDLLRSIVRFVAEKQFLF
FAPVSRAWREAWGGRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAI
ARLGNLELLRSARGSGCVWNGLTFSEAARRGDLAFLQWLKSSGCRWDKFS
AIAAAGGGHLHVLKWLRKSGVGWDDDEWTCHMAAAGGHVHVLRWAIQNGC
RYDSVTCWSAAHQGHLEALKYLRKIGCGWDRQRCFDAAVRGGHRRVAEWI
VAN*
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mRNA from alignment at Ecto-sp13_S_contig6112:7390..8151-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6112.16795.1 ID=mRNA_Ecto-sp13_S_contig6112.16795.1|Name=mRNA_Ecto-sp13_S_contig6112.16795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6112:7390..8151- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGCGTTCAGGAACAACAGCGACACTGATGACGGCGGCGGCGACGG GGCTACGGACCTCTGGCGGGGGAGCGGTCTCATCCTGGCCGGCAACGTGG ACCTCCTGCGGAGCATCGTCCGCTTCGTTGCCGAGAAGCAGTTCCTCTTC TTCGCGCCGGTCTCCAGGGCCTGGAGGGAGGCCTGGGGCGGCCGCCCGGC GGTGACGAGCTGGGTCACCGAAGACTCGTCCGTGTCTCAGCTGAGGTACA GCTTCGAGCGGGGGCTCCCGCGGGACCGGCCGGAGCTGTGCGCCGCTATC GCGCGGCTCGGCAACCTCGAGCTCCTTCGCTCGGCCAGGGGCAGCGGGTG CGTCTGGAACGGGCTGACGTTCTCGGAAGCGGCGCGGCGGGGGGACCTGG CGTTCCTCCAGTGGCTCAAGTCCAGCGGGTGCAGGTGGGACAAGTTCTCG GCCATCGCCGCGGCGGGGGGGGGGCACCTCCACGTGCTAAAGTGGCTGAG GAAGAGCGGCGTCGGGTGGGACGACGACGAGTGGACCTGCCACATGGCGG CGGCGGGGGGCCACGTGCATGTCCTGCGGTGGGCCATACAGAACGGGTGC CGGTACGACAGCGTCACCTGCTGGTCGGCCGCGCACCAGGGGCACCTCGA GGCTCTCAAGTACCTGAGAAAGATCGGCTGCGGCTGGGACAGGCAGCGGT GCTTCGACGCCGCGGTCCGCGGGGGCCACCGGCGCGTGGCGGAGTGGATC GTGGCGAACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6112:7390..8151-

>mRNA_Ecto-sp13_S_contig6112.16795.1 ID=mRNA_Ecto-sp13_S_contig6112.16795.1|Name=mRNA_Ecto-sp13_S_contig6112.16795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6112:7390..8151- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGCGTTCAGGAACAACAGCGACACTGATGACGGCGGCGGCGACGG
GGCTACGGACCTCTGGCGGGGGAGCGGTCTCATCCTGGCCGGCAACGTGG
ACCTCCTGCGGAGCATCGTCCGCTTCGTTGCCGAGAAGCAGTTCCTCTTC
TTCGCGCCGGTCTCCAGGGCCTGGAGGGAGGCCTGGGGCGGCCGCCCGGC
GGTGACGAGCTGGGTCACCGAAGACTCGTCCGTGTCTCAGCTGAGGTACA
GCTTCGAGCGGGGGCTCCCGCGGGACCGGCCGGAGCTGTGCGCCGCTATC
GCGCGGCTCGGCAACCTCGAGCTCCTTCGCTCGGCCAGGGGCAGCGGGTG
CGTCTGGAACGGGCTGACGTTCTCGGAAGCGGCGCGGCGGGGGGACCTGG
CGTTCCTCCAGTGGCTCAAGTCCAGCGGGTGCAGGTGGGACAAGTTCTCG
GCCATCGCCGCGGCGGGGGGGGGGCACCTCCACGTGCTAAAGTGGCTGAG
GAAGAGCGGCGTCGGGTGGGACGACGACGAGTGGACCTGCCACATGGCGG
CGGCGGGGGGCCACGTGCATGTCCTGCGGTGGGCCATACAGAACGGGTGC
CGGTACGACAGCGTCACCTGCTGGTCGGCCGCGCACCAGGGGCACCTCGA
GGCTCTCAAGTACCTGAGAAAGATCGGCTGCGGCTGGGACAGGCAGCGGT
GCTTCGACGCCGCGGTCCGCGGGGGCCACCGGCGCGTGGCGGAGTGGATC
GTGGCGAACTGA
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